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Pine has two glutamine synthetase paralogs, GS1b.1 and GS1b.2, exhibiting distinct biochemical properties
Open accessPublished version of a preprint
Abstract
SUMMARY: The enzyme glutamine synthetase (EC 6.3.1.2) is mainly responsible for the incorporation of inorganic nitrogen into organic molecules in plants. In the present work, a pine ( Pinus pinaster ) GS1 ( PpGS1b.2 ) gene was identified, showing a high sequence identity with the GS1b.1 gene previously characterized in conifers. Phylogenetic analysis revealed that the presence of PpGS1b.2 is restricted to the genera Pinus and Picea and is not found in other conifers. Gene expression data suggest a putative role of PpGS1b.2 in plant development, similar to other GS1b genes from angiosperms, suggesting evolutionary convergence. The characterization of GS1b.1 and GS1b.2 at the structural, physicochemical, and kinetic levels has shown differences even though they have high sequence homology. GS1b.2 had a lower optimum pH (6 vs. 6.5) and was less thermally stable than GS1b.1. GS1b.2 exhibited positive cooperativity for glutamate and substrate inhibition for ammonium. However, GS1b.1 exhibited substrate inhibition behavior for glutamate and ATP. Alterations in the kinetic characteristics produced by site‐directed mutagenesis carried out in this work strongly suggest an implication of amino acids at positions 264 and 267 in the active center of pine GS1b.1 and GS1b.2 being involved in affinity toward ammonium. Therefore, the amino acid differences between GS1b.1 and GS1b.2 would support the functioning of both enzymes to meet distinct plant needs.
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Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Research works printed but not linked: 81
- 10.1093/nar/gky379 · DOI · Paper page
- 10.1093/bioinformatics/btab348 · DOI
- 10.1016/S0022‐2836(05)80360‐2 · DOI · Paper page
- 10.3389/fpls.2022.877960 · DOI
- 10.1046/j.1365‐313x.2001.00938.x · DOI
- 10.1371/journal.pone.0095581 · DOI
- 10.1111/j.1469‐8137.2009.02823.x · DOI
- 10.1093/jxb/38.11.1799 · DOI
- 10.1093/bioinformatics/btu170 · DOI · Paper page
- 10.1006/abio.1976.9999 · DOI · Paper page
- 10.3389/fpls.2012.00100 · DOI
- 10.1093/treephys/tpt113 · DOI
- 10.1093/jxb/erv118 · DOI
- 10.1111/tpj.13617 · DOI
- 10.1007/BF00201059 · DOI
- 10.1016/0014‐5793(96)00886‐1 · DOI
- 10.1023/a:1006219205062 · DOI
- 10.1186/s12870‐014‐0365‐5 · DOI
- 10.1093/pcp/pcf094 · DOI
- 10.1016/j.pbi.2012.01.003 · DOI
- 10.1186/1472‐6750‐9‐61 · DOI
- 10.1093/nar/gkh340 · DOI · Paper page
- 10.1093/jxb/ert335 · DOI
- 10.1093/jxb/erm121 · DOI
- 10.3389/fpls.2022.835835 · DOI
- 10.1093/pcp/pct046 · DOI
- 10.1111/pbi.13046 · DOI
- 10.1016/j.ab.2003.12.024 · DOI
- 10.1111/j.1399‐3054.2004.00353.x · DOI
- 10.1007/s00425‐003‐1185‐2 · DOI
- 10.1093/pcp/pct006 · DOI
- 10.1038/nbt.1883 · DOI
- 10.1007/s11295‐016‐1018‐7 · DOI
- 10.1093/jxb/eru411 · DOI
- 10.1111/j.1744‐7348.2001.tb00087.x · DOI
- 10.1038/s41467‐021‐25238‐7 · DOI
- Heldt H., 2011, Plant Biochemestry
- 10.1016/B978-0-12-809633-8.21265-X · DOI
- 10.1093/pcp/pch190 · DOI
- 10.1074/jbc.M313710200 · DOI
- 10.1093/pcp/pci238 · DOI
- 10.1007/978-3-319-90650-8_14 · DOI
- 10.1093/pcp/pcy235 · DOI
- 10.1093/bioinformatics/8.3.275 · DOI
- 10.1104/pp.114.251298 · DOI
- Lea P.J., 1999, Plant Amino Acids, 1
- 10.1093/nar/gkz239 · DOI
- 10.1016/b978‐0‐12‐152810‐2.50008‐5 · DOI
- 10.1016/j.jsb.2006.06.003 · DOI
- López‐Bucio J.S., 2019, Neurotransmitters in plants: perspectives and applications, 231
- 10.1093/jxb/erq299 · DOI
- 10.1105/tpc.106.042689 · DOI
- 10.1126/science.1201101 · DOI
- 10.1038/s41592‐022‐01488‐1 · DOI · Paper page
- 10.1111/plb.13408 · DOI
- 10.1111/pce.14214 · DOI
- 10.1111/j.1469‐8137.2005.01551.x · DOI
- 10.3389/fpls.2019.01743 · DOI
- 10.1093/bioinformatics/btn227 · DOI
- 10.1074/jbc.271.47.29561 · DOI
- 10.1111/j.1399‐3054.1994.tb00384.x · DOI
- Shin W.H., 2014, Prediction of protein structure and interaction by GALAXY protein modeling programs, BioDesign, 2, 1
- 10.1007/978-3-030-93390-6_5 · DOI
- 10.1093/jexbot/53.370.891 · DOI
- 10.1111/j.1365‐313X.2005.02406.x · DOI
- 10.1093/molbev/msab120 · DOI
- 10.1111/nph.14876 · DOI
- 10.1016/j.tplants.2014.06.002 · DOI
- 10.1093/nar/gkz1020 · DOI
- 10.1007/s11248‐014‐9852‐6 · DOI
- 10.1111/tpj.15712 · DOI
- 10.1093/nar/gkab1061 · DOI · Paper page
- Villalobos D.P., 2008, Aproximación genómica al estudio de la formación de la madera en los pinos
- 10.1104/pp.83.1.155 · DOI
- 10.1016/S0021‐9258(17)32883‐1 · DOI
- 10.3389/fpls.2021.580405 · DOI
- 10.1126/science.aar6464 · DOI
- 10.1007/s10930‐009‐9210‐3 · DOI
- 10.1093/jxb/eru103 · DOI
- 10.1007/s11033‐014‐3649‐9 · DOI
- 10.3390/ijms222312998 · DOI
Metadata
- Authors
- Valderrama‐Martín, J. M., Ortigosa, F., Aledo, J. C., Ávila, C., Cánovas, F. M., & Cañas, R. A.
- Affiliations
- Universidad de Málaga (ES)
- Corresponding author
- Cañas, Rafael A.
- ORCID
- Venue
- The Plant Journal
- Publisher
- Wiley
- Published
- 2023-02-04
- Volume
- 113
- Issue
- 6
- Pages
- 1330-1347
- ISSN
- 0960-7412 (ISSN-L)
- 1365-313X
- OpenAlex
- W4317568126
- Cited by
- 4
- References
- 1
- Citations by year
- 2026: 1 · 2025: 1 · 2024: 1 · 2023: 1
- FWCI
- 0.63
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- The Plant Journal (publishedVersion, cc-by-nc)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Repositorio Institucional de la Universidad de Málaga (University of Málaga) (submittedVersion, cc-by-nc)
- Repositorio Institucional de la Universidad de Málaga (University of Málaga) (submittedVersion, other-oa)
- Funders
- Agencia de Innovación y Desarrollo de Andalucía (BIO‐114, P20_00036 PAIDI 2020/FEDER, UE)
- Secretaría de Estado de Investigación, Desarrollo e Innovación (BIO2015‐73512‐JIN MINECO/AEI/FEDER, UE, BIO2015‐69285‐R, RTI2018‐094041‐B‐I00)
- Universidad de Málaga (B4‐2021‐01, UMAJI11)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant nutrient uptake and metabolism
- Life Sciences › Agricultural and Biological Sciences › Agronomy and Crop Science › Nitrogen and Sulfur Effects on Brassica
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Amino Acid Enzymes and Metabolism
- Keywords
- glutamine synthetase, Pinus pinaster, paralogs, conifers, nitrogen assimilation, enzyme kinetics, substrate inhibition, cooperativity, thermal stability, pH optimum, active site residues, site-directed mutagenesis, phylogenetic analysis, gene expression, plant development, convergent evolution
- MeSH terms
- Glutamate-Ammonia Ligase, Phylogeny, Glutamic Acid, Pinus, Ammonium Compounds
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Cite CoChat for the checks on this page, and the paper for its own findings.
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- CoChat. (2026). Citation check: Pine has two glutamine synthetase paralogs, GS1b.1 and GS1b.2, exhibiting distinct biochemical properties. https://app.cochat.ai/papers/10.1111/tpj.16113
- The paper
- Valderrama‐Martín, J. M., Ortigosa, F., Aledo, J. C., Ávila, C., Cánovas, F. M., & Cañas, R. A. (2023). Pine has two glutamine synthetase paralogs, GS1b.1 and GS1b.2, exhibiting distinct biochemical properties. The Plant Journal. https://doi.org/10.1111/tpj.16113