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Functional Annotation of a Full-Length Arabidopsis cDNA Collection
Abstract
Full-length complementary DNAs (cDNAs) are essential for the correct annotation of genomic sequences and for the functional analysis of genes and their products. We isolated 155,144 RIKEN Arabidopsis full-length (RAFL) cDNA clones. The 3′-end expressed sequence tags (ESTs) of 155,144 RAFL cDNAs were clustered into 14,668 nonredundant cDNA groups, about 60% of predicted genes. We also obtained 5′ ESTs from 14,034 nonredundant cDNA groups and constructed a promoter database. The sequence database of the RAFL cDNAs is useful for promoter analysis and correct annotation of predicted transcription units and gene products. Furthermore, the full-length cDNAs are useful resources for analyses of the expression profiles, functions, and structures of plant proteins.
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Cites
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Initiative, T. A. G. (2000) · Nature · doi:10.1038/35048692 · Cited by 9,301
Cited by
Seki, M., Narusaka, M., Ishida, J., Nanjo, T., Fujita, M., Oono, Y., Kamiya, A., Nakajima, M., Enju, A., Sakurai, T., et al. (2002) · The Plant Journal · doi:10.1046/j.1365-313x.2002.01359.x · Cited by 1,924
Self-citationThe Arabidopsis cytochrome P450 CYP707A encodes ABA 8′‐hydroxylases: key enzymes in ABA catabolism
Kushiro, T., Okamoto, M., Nakabayashi, K., Yamagishi, K., Kitamura, S., Asami, T., Hirai, N., Koshiba, T., Kamiya, Y., & Nambara, E. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600121 · Cited by 1,019
Kim, J.-M., To, T. K., Ishida, J., Morosawa, T., Kawashima, M., Matsui, A., Toyoda, T., Kimura, H., Shinozaki, K., & Seki, M. (2008) · Plant and Cell Physiology · doi:10.1093/pcp/pcn133 · Cited by 346
Self-citationUmezawa, T., Okamoto, M., Kushiro, T., Nambara, E., Oono, Y., Seki, M., Kobayashi, M., Koshiba, T., Kamiya, Y., & Shinozaki, K. (2006) · The Plant Journal · doi:10.1111/j.1365-313x.2006.02683.x · Cited by 334
Self-citationHiraguri, A., Itoh, R., Kondo, N., Nomura, Y., Aizawa, D., Murai, Y., Koiwa, H., Seki, M., Shinozaki, K., & Fukuhara, T. (2005) · Plant Molecular Biology · doi:10.1007/s11103-004-6853-5 · Cited by 295
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Metadata
- Authors
- Seki, M., Narusaka, M., Kamiya, A., Ishida, J., Satou, M., Sakurai, T., Nakajima, M., Enju, A., Akiyama, K., Oono, Y., Muramatsu, M., Hayashizaki, Y., Kawai, J., Carninci, P., Itoh, M., Ishii, Y., Arakawa, T., Shibata, K., Shinagawa, A., & Shinozaki, K.
- Venue
- Science
- Published
- 2002-04-05
- Volume
- 296
- Issue
- 5565
- Pages
- 141-145
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- OpenAlex
- W2144905501
- Cited by
- 626
- References
- 1
- FWCI
- 18.14
- Type
- journal article
- Language
- en
- Open access
- closed
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- Seki, M., Narusaka, M., Kamiya, A., Ishida, J., Satou, M., Sakurai, T., Nakajima, M., Enju, A., Akiyama, K., Oono, Y., Muramatsu, M., Hayashizaki, Y., Kawai, J., Carninci, P., Itoh, M., Ishii, Y., Arakawa, T., Shibata, K., Shinagawa, A., & Shinozaki, K. (2002). Functional Annotation of a Full-Length Arabidopsis cDNA Collection. Science. https://doi.org/10.1126/science.1071006
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