Terraces in Phylogenetic Tree Space

Sanderson, Michael J., McMahon, Michelle M., Steel, Mike·2011·Science
DOI 10.1126/science.1206357

Cited by (143)

Items 101–143 of 143

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  6. Phylogenetic Flexibility via Hall-Type Inequalities and Submodularity
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  7. Seeing the Trees in Your Terrace
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  8. Algorithms and Computer Architectures for Evolutionary Bioinformatics
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  9. Phylogenetic trees; selected combinatorial problems
    Peter Regner · 2012 · reposiTUm (TU Wien)
  10. Phylogenetic decisiveness and no-rainbow hypergraph coloring
    Ghazaleh Parvini · 2021
  11. Terrace Aware Phylogenomic Inference from Supermatrices
    Olga Chernomor, Arndt von Haeseler, Bùi Quang Minh · 2014 · arXiv (Cornell University)
  12. Managing and analyzing phylogenetic databases
    Akshay Deepak · 2013 · Iowa State University Digital Repository (Iowa State University)
  13. Enumerating All Maximal Frequent Subtrees
    Akshay Deepak, David Fernández‐Baca · 2012 · Iowa State University Digital Repository (Iowa State University)
  14. Neighborhoods of Trees in Circular Orderings
    Sarah Baskowski, Vincent Moulton, Andreas Spillner, Taoyang Wu · 2014 · Bulletin of Mathematical Biology
  15. Sampling Discrete Combinatorial Spaces in Phylogenetics
    Alexander Safatli · 2015 · DalSpace (Dalhousie University)
  16. Searching Tree Space, Methods for
    Alexandros Stamatakis · 2016 · Elsevier eBooks
  17. Impacts of terraces on phylogenetic inference
    Michael J. Sanderson, Michelle M. McMahon, Alexandros Stamatakis, Derrick J. Zwickl, Mike Steel · 2014 · arXiv (Cornell University)
  18. Checking Phylogenetic Decisiveness in Theory and in Practice
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  19. Ultraconserved elements help resolve the phylogeny of an ancient radiation of venomous flies (Diptera: Asilidae)
    Chris M. Cohen, Katherine Noble, T. Jeffrey Cole, Michael S. Brewer · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  20. Quantifying Structure and Variation in Complex Phylogenetic Data
    Genevieve G. Mount · 2020
  21. Molecular Systematics and the Evolution of Arthropods
    Marjorie A. Hoy · 2019 · Elsevier eBooks
  22. Supermatrix Approach
    Aidan Budd, Alexandros Stamatakis · 2004 · Dictionary of Bioinformatics and Computational Biology
  23. Gentrius: identifying equally scoring trees in phylogenomics with incomplete data
    Olga Chernomor, Christiane Elgert, Arndt von Haeseler · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  24. Parallel Inference of Phylogenetic Stands with Gentrius
    Anastasis Togkousidis, Olga Chernomor, Alexandros Stamatakis · 2023 · IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum
  25. Gentrius: Generating Trees Compatible With a Set of Unrooted Subtrees and its Application to Phylogenetic Terraces
    Olga Chernomor, Christiane Elgert, Arndt von Haeseler · 2024 · Molecular Biology and Evolution
  26. Extraction of Orthologs from Genome-Sequencing Data for Phylogenetic Analysis
    Guan Pang, Feng M. Cai · 2024 · BIO-PROTOCOL
  27. Maximum Likelihood Phylogenetic Inference
    Alessandra Pavan Lamarca, Carlos Guerra Schrago, Beatriz Mello · 2024 · Elsevier eBooks
  28. Searching Tree Space, Methods for
    Carlos Guerra Schrago · 2025 · Elsevier eBooks
  29. Additional file 5 of A phylogenomic study of Steganinae fruit flies (Diptera: Drosophilidae): strong gene tree heterogeneity and evidence for monophyly
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  30. Additional file 7 of A phylogenomic study of Steganinae fruit flies (Diptera: Drosophilidae): strong gene tree heterogeneity and evidence for monophyly
    Dias, Guilherme Rezende, Eduardo Guimarães Dupim, Thyago Vanderlinde, Beatriz Mello, Antonio Bernardo Carvalho · 2020 · Figshare
  31. Additional file 6 of A phylogenomic study of Steganinae fruit flies (Diptera: Drosophilidae): strong gene tree heterogeneity and evidence for monophyly
    Dias, Guilherme Rezende, Eduardo Guimarães Dupim, Thyago Vanderlinde, Beatriz Mello, Antonio Bernardo Carvalho · 2020 · Figshare
  32. Additional file 3 of A phylogenomic study of Steganinae fruit flies (Diptera: Drosophilidae): strong gene tree heterogeneity and evidence for monophyly
    Dias, Guilherme Rezende, Eduardo Guimarães Dupim, Thyago Vanderlinde, Beatriz Mello, Antonio Bernardo Carvalho · 2020 · Figshare
  33. Additional file 9 of A phylogenomic study of Steganinae fruit flies (Diptera: Drosophilidae): strong gene tree heterogeneity and evidence for monophyly
    Dias, Guilherme Rezende, Eduardo Guimarães Dupim, Thyago Vanderlinde, Beatriz Mello, Antonio Bernardo Carvalho · 2020 · Figshare
  34. Additional file 8 of A phylogenomic study of Steganinae fruit flies (Diptera: Drosophilidae): strong gene tree heterogeneity and evidence for monophyly
    Dias, Guilherme Rezende, Eduardo Guimarães Dupim, Thyago Vanderlinde, Beatriz Mello, Antonio Bernardo Carvalho · 2020 · Figshare
  35. Additional file 2 of A phylogenomic study of Steganinae fruit flies (Diptera: Drosophilidae): strong gene tree heterogeneity and evidence for monophyly
    Dias, Guilherme Rezende, Eduardo Guimarães Dupim, Thyago Vanderlinde, Beatriz Mello, Antonio Bernardo Carvalho · 2020 · Figshare
  36. Additional file 4 of A phylogenomic study of Steganinae fruit flies (Diptera: Drosophilidae): strong gene tree heterogeneity and evidence for monophyly
    Dias, Guilherme Rezende, Eduardo Guimarães Dupim, Thyago Vanderlinde, Beatriz Mello, Antonio Bernardo Carvalho · 2020 · Figshare
  37. Additional file 1 of Transcriptome Ortholog Alignment Sequence Tools (TOAST) for phylogenomic dataset assembly
    Dustin J. Wcisel, Howard, J. Thomas, Jeffrey A. Yoder, Alex Dornburg · 2020 · Figshare
  38. Additional file 1 of A phylogenomic study of Steganinae fruit flies (Diptera: Drosophilidae): strong gene tree heterogeneity and evidence for monophyly
    Dias, Guilherme Rezende, Eduardo Guimarães Dupim, Thyago Vanderlinde, Beatriz Mello, Antonio Bernardo Carvalho · 2020 · Figshare
  39. Unifying Phylogenetic Traversal and Deep Learning to Guide Tree Exploration
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  40. Over‐reliance on Completeness exposes ultraconserved elements datasets to non‐randomly distributed missing data
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