Virulence factors enhance Citrobacter rodentium expansion through aerobic respiration

NIH Image to ImageJ: 25 years of image analysis

Schneider, C. A., Rasband, W. S., & Eliceiri, K. W. (2012) · Nature Methods · doi:10.1038/nmeth.2089 · Cited by 64,638

QIIME allows analysis of high-throughput community sequencing data

Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887

A Broad Host Range Mobilization System for In Vivo Genetic Engineering: Transposon Mutagenesis in Gram Negative Bacteria

Simon, R., Priefer, U. B., & Pühler, A. (1983) · Nature Biotechnology · doi:10.1038/nbt1183-784 · Cited by 7,171

Diarrheagenic Escherichia coli

Nataro, J. P., & Kaper, J. B. (1998) · Clinical Microbiology Reviews · doi:10.1128/cmr.11.1.142 · Cited by 5,109

A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR

Miller, V. L., & Mekalanos, J. J. (1988) · Journal of Bacteriology · doi:10.1128/jb.170.6.2575-2583.1988 · Cited by 2,126

Crosstalk between microbiota-derived short-chain fatty acids and intestinal epithelial HIF augments tissue barrier function

Kelly, C. J., Zheng, L., Campbell, E. L., Saeedi, B., Scholz, C. C., Bayless, A. J., Wilson, K. E., Glover, L. E., Kominsky, D. J., Magnuson, A., et al. (2015) · Cell Host & Microbe · doi:10.1016/j.chom.2015.03.005 · Cited by 1,716

Integrative analysis of environmental sequences using MEGAN4Preprint

Huson, D. H., Mitra, S., Ruscheweyh, H., Weber, N., & Schuster, S. C. (2011) · Genome Research · doi:10.1101/gr.120618.111 · Cited by 1,559

Host-Mediated Inflammation Disrupts the Intestinal Microbiota and Promotes the Overgrowth of Enterobacteriaceae

Lupp, C., Robertson, M. L., Wickham, M. E., Sekirov, I., Champion, O. L., Gaynor, E. C., & Finlay, B. B. (2007) · Cell Host & Microbe · doi:10.1016/j.chom.2007.06.010 · Cited by 1,310

Gut inflammation provides a respiratory electron acceptor for Salmonella

Winter, S., Thiennimitr, P., Winter, M. G., Butler, B. P., Huseby, D. L., Crawford, R. W., Russell, J. M., Bevins, C. L., Adams, L. G., Tsolis, R. M., et al. (2010) · Nature · doi:10.1038/nature09415 · Cited by 1,271

Enteropathogenic E. coli (EPEC) transfers its receptor for intimate adherence into mammalian cells.

Kenny, B., Devinney, R., Stein, M., Reinscheid, D., Frey, E., & Finlay, B. (1997) · Cell · doi:10.1016/s0092-8674(00)80437-7 · Cited by 1,258

Pea polyphenolics and hydrolysis processing alter microbial community structure and early pathogen colonization in mice

Forgie, A. J., Gao, Y., Ju, T., Pepin, D. M., Yang, K., Gänzle, M. G., Ozga, J. A., Chan, C. B., & Willing, B. P. (2019) · The Journal of Nutritional Biochemistry · doi:10.1016/j.jnutbio.2019.01.012 · Cited by 24

Using Enteric Pathogens to Probe the Gut Microbiota

Spiga, L., & Winter, S. (2018) · Trends in Microbiology · doi:10.1016/j.tim.2018.11.007 · Cited by 23

Reshaping of bacterial molecular hydrogen metabolism contributes to the outgrowth of commensal E. coli during gut inflammation

Hughes, E. R., Winter, M. G., da Silva, L. A., Muramatsu, M. K., Jimenez, A. G., Gillis, C. C., Spiga, L., Chanin, R. B., Santos, R. L., Zhu, W., et al. (2021) · eLife · doi:10.7554/elife.58609 · Cited by 21

The microbiota conditions a gut milieu that selects for wild-type Salmonella Typhimurium virulence

Gül, E., Bakkeren, E., Salazar, G., Steiger, Y., Younes, A. A., Clerc, M., Christen, P., Fattinger, S. A., Nguyen, B. D., Kiefer, P., et al. (2023) · PLoS Biology · doi:10.1371/journal.pbio.3002253 · Cited by 25

Increased Intestinal Permeability: An Avenue for the Development of Autoimmune Disease?

English, J., Connolly, L., & Stewart, L. D. (2023) · Exposure and Health · doi:10.1007/s12403-023-00578-5 · Cited by 27

Microbiota signatures in type-2 diabetic patients with chronic kidney disease - A Pilot Study

Pîrcălăbioru, G. G., Stoica, R. A., Petcu, L. M., Picu, A. A., Suceveanu, A. P., Salmen, T., Stefan, D., Serafinceanu, C., Chifiriuc, M. C., & Stoian, A. P. (2019) · Journal of Mind and Medical Sciences · doi:10.22543/7674.61.p130136 · Cited by 22

Wogonin regulates colonocyte metabolism via PPARγ to inhibit Enterobacteriaceae against dextran sulfate sodium‐induced colitis in mice

Su, Y., Liang, J., Zhang, M., Zhao, M., Xie, X., Wang, X., Pan, Z., Huang, S., Yan, R., Wang, Q., et al. (2022) · Phytotherapy Research · doi:10.1002/ptr.7677 · Cited by 21

A pathogen-specific sRNA influences enterohemorrhagic Escherichia coli fitness and virulence in part by direct interaction with the transcript encoding the ethanolamine utilization regulatory factor EutR

Sauder, A. B., & Kendall, M. M. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkab863 · Cited by 22

Inducible transposon mutagenesis identifies bacterial fitness determinants during infection in mice

Basta, D. W., Campbell, I. W., Sullivan, E. J., Hotinger, J. A., Hullahalli, K., Garg, M., & Waldor, M. K. (2025) · Nature Microbiology · doi:10.1038/s41564-025-01975-z · Cited by 19

Good girl goes bad: Understanding how gut commensals cause disease

Dey, P. (2024) · Microbial Pathogenesis · doi:10.1016/j.micpath.2024.106617 · Cited by 19

Quorum Sensing and the Gut Microbiome

Jimenez, A. G., & Sperandio, V. (2019) · Elsevier eBooks · doi:10.1016/b978-0-12-814905-8.00006-x · Cited by 19

Aerobic Metabolism in Vibrio cholerae Is Required for Population Expansion during Infection

Alst, A. J. V., & DiRita, V. J. (2020) · mBio · doi:10.1128/mbio.01989-20 · Cited by 19

Multi-omics provide mechanistic insight into the Pb-induced changes in tadpole fitness-related traits and environmental water quality

Lv, Y. Y., Zhang, Q.-D., Chang, L., Yang, D.-L., Riaz, L., Li, C., Chen, X.-H., Jiang, J., & Zhu, W. (2022) · Ecotoxicology and Environmental Safety · doi:10.1016/j.ecoenv.2022.114207 · Cited by 19

Single-cell analysis and spatial resolution of the gut microbiome

Madhu, B., Miller, B. M., & Levy, M. (2023) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2023.1271092 · Cited by 18

Liberation of host heme by Clostridioides difficile- mediated damage enhances Enterococcus faecalis fitness during infection

Smith, A. B., Specker, J. T., Hewlett, K. K., Scoggins, T. R., Knight, M., Lustig, A. M., Li, Y., Evans, K. M., Guo, Y., She, Q., et al. (2023) · mBio · doi:10.1128/mbio.01656-23 · Cited by 17

Resource Competition and Host Feedbacks Underlie Regime Shifts in Gut Microbiota

Guittar, J. L., Koffel, T., Shade, A. L., Klausmeier, C. A., & Litchman, E. (2021) · The American Naturalist · doi:10.1086/714527 · Cited by 17

Pharmacological modulation of mitochondrial function as novel strategies for treating intestinal inflammatory diseases and colorectal cancer

Wang, B., Guo, X., Qin, L., He, L., Li, J., Jin, X., Chen, D., & Ge, G. (2024) · Journal of Pharmaceutical Analysis · doi:10.1016/j.jpha.2024.101074 · Cited by 18

Enhancing resistance to Salmonella typhimurium in yellow-feathered broilers: a study of a strain of Lactiplantibacillus plantarum as probiotic feed additives

Yin, Y., Peng, H., Bai, H., Pei, Z., Chen, Z., Ma, C., Zhu, M., Li, J., Li, C., Gong, Y., et al. (2024) · Frontiers in Microbiology · doi:10.3389/fmicb.2024.1450690 · Cited by 18

Disequilibrium in chicken gut microflora with avian colibacillosis is related to microenvironment damaged by antibiotics

Xing, Z., Li, H., Li, M., Gao, R., Guo, C., & Mi, S. (2020) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2020.143058 · Cited by 18

Formate oxidation in the intestinal mucus layer enhances fitness of Salmonella enterica serovar Typhimurium

Winter, M. G., Hughes, E. R., Muramatsu, M. K., Jimenez, A. G., Chanin, R. B., Spiga, L., Gillis, C. C., McClelland, M., Andrews‐Polymenis, H. L., & Winter, S. (2023) · mBio · doi:10.1128/mbio.00921-23 · Cited by 15

Loss of disease tolerance during Citrobacter rodentium infection is associated with impaired epithelial differentiation and hyperactivation of T cell responses

Kang, E., Zhou, G., Yousefi, M., Cayrol, R., Xia, J., & Gruenheid, S. (2018) · Scientific Reports · doi:10.1038/s41598-017-17386-y · Cited by 17

Pathogens’ adaptation to the human host

Sperandio, V. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1813379115 · Cited by 15

The Ethanolamine-Sensing Transcription Factor EutR Promotes Virulence and Transmission during Citrobacter rodentium Intestinal Infection

Rowley, C. A., Sauder, A. B., & Kendall, M. M. (2020) · Infection and Immunity · doi:10.1128/iai.00137-20 · Cited by 16

What’s for dinner? How Citrobacter rodentium’s metabolism helps it thrive in the competitive gut

Liang, Q., & Vallance, B. A. (2021) · Current Opinion in Microbiology · doi:10.1016/j.mib.2021.06.004 · Cited by 17

Overview of the Effect of Citrobacter rodentium Infection on Host Metabolism and the Microbiota

Hopkins, E. G. D., & Frankel, G. M. (2021) · Methods in molecular biology · doi:10.1007/978-1-0716-1339-9_20 · Cited by 16

Helicobacter Spp. Communities are Prevalent in Wild Mice and Protect from Lethal Citrobacter rodentium Infection in Absence of Adaptive Immunity

Zhao, B., Osbelt, L., Lesker, T. R., Wende, M., Gálvez, E. J. C., Hönicke, L., Bublitz, A., Greweling‐Pils, M. C., Graßl, G. A., Neumann‐Schaal, M., et al. (2022) · Cell Reports · doi:10.1016/j.celrep.2023.112549 · Cited by 18

Taming the Beast: Interplay between Gut Small Molecules and Enteric Pathogens

Kumar, A., Ellermann, M., & Sperandio, V. (2019) · Infection and Immunity · doi:10.1128/iai.00131-19 · Cited by 16

Vitamin D/vitamin D receptor protects intestinal barrier against colitis by positively regulating Notch pathway

Li, Y., Guo, Y., Geng, C., Song, S., Yang, W., Li, X. F., & Wang, C. (2024) · Frontiers in Pharmacology · doi:10.3389/fphar.2024.1421577 · Cited by 14

IUPHAR review: From gut to brain: The role of gut dysbiosis, bacterial amyloids, and metabolic disease in Alzheimer’s disease

Inan, S., Wilson, R. P., & Tükel, Ç. (2025) · Pharmacological Research · doi:10.1016/j.phrs.2025.107693 · Cited by 15

Community metabolic modeling approaches to understanding the gut microbiome: Bridging biochemistry and ecology

Mendes‐Soares, H., & Chia, N. (2016) · Free Radical Biology and Medicine · doi:10.1016/j.freeradbiomed.2016.12.017 · Cited by 18

Malaria parasite infection compromises colonization resistance to an enteric pathogen by reducing gastric acidity

Walker, G. T., Yang, G., Tsai, J. Y., Rodriguez, J. L., English, B. C., Faber, F., Souvannaseng, L., Butler, B. P., & Tsolis, R. M. (2021) · Science Advances · doi:10.1126/sciadv.abd6232 · Cited by 12

Substance P receptor signaling contributes to host maladaptive responses during enteric bacterial infection

Cremin, M., Ramírez, V. T., Sanchez, K., Tay, E. X. Y., Murray, K. M., Brust‐Mascher, I., & Reardon, C. (2025) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2415287122 · Cited by 12

Transcriptional and metabolic regulation of EHEC and Citrobacter rodentium pathogenesis

Wale, K. R., Cottam, C., Connolly, J. P. R., & Roe, A. J. (2021) · Current Opinion in Microbiology · doi:10.1016/j.mib.2021.06.002 · Cited by 11

Interplay of niche and respiratory network in shaping bacterial colonization

Srivastav, S., Biswas, A., & Anand, A. (2024) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2024.108052 · Cited by 10

Gut Microbiota Resilience Mechanisms Against Pathogen Infection and its Role in Inflammatory Bowel Disease

Cipelli, M., da Silva, E. M., & Câmara, N. O. S. (2023) · Current Clinical Microbiology Reports · doi:10.1007/s40588-023-00207-4 · Cited by 11

A master regulator of central carbon metabolism directly activates virulence gene expression in attaching and effacing pathogens

Wale, K. R., O’Boyle, N., McHugh, R. E., Serrano, E., Mark, D. R., Douce, G. R., Connolly, J. P. R., & Roe, A. J. (2024) · PLoS Pathogens · doi:10.1371/journal.ppat.1012451 · Cited by 10

Microbial Respiration in the Colon: Using H2O2 to Catch Your Breath

Crowley, S. M., & Vallance, B. A. (2020) · Cell Host & Microbe · doi:10.1016/j.chom.2020.11.006 · Cited by 10

Bacterial membrane vesicles restore gut anaerobiosis

Pitt, N., Morrissette, M., Gates, M. F., Bargabos, R., Krumpoch, M. T., Hawkins, B. A., & Lewis, K. (2025) · npj Biofilms and Microbiomes · doi:10.1038/s41522-025-00676-z · Cited by 9

From vacant to vivid: The nutritional landscape drives infant gut microbiota establishment

Melki, R., & Litvak, Y. (2024) · Molecular Microbiology · doi:10.1111/mmi.15296 · Cited by 8

An anaerobic pathogen rewires host metabolism to fuel oxidative growth in the inflamed gut

Spiga, L., Fansler, R. T., Wu, Y., Grote, A., Langford-Butler, M., Miller, A. K., Neal, M. J., Hale, O. F., Singla, D., Calcutt, M. W., et al. (2026) · Cell · doi:10.1016/j.cell.2026.04.012 · Cited by 8

Lactobacillus plantarum-derived extracellular vesicles from dietary barley leaf supplementation attenuate Citrobacter rodentium infection and intestinal inflammation

Feng, Y., Zhao, Q., Zhao, Y., Ma, C., Tian, M., Hu, X., Chen, F., & Li, D. (2025) · Journal of Nanobiotechnology · doi:10.1186/s12951-025-03504-w · Cited by 9

Barley Leaf Ameliorates Citrobacter rodentium-Induced Colitis through Preventive Effects

Feng, Y., Li, D., Ma, C., Tian, M., Hu, X., & Chen, F. (2022) · Nutrients · doi:10.3390/nu14183833 · Cited by 8

Attaching and effacing pathogens modulate host mitochondrial structure and function

Harishankar, A., & Viswanathan, V. K. (2023) · International review of cytology · doi:10.1016/bs.ircmb.2023.03.001 · Cited by 8

Epithelial talin-1 protects mice from Citrobacter rodentium -induced colitis by restricting bacterial crypt intrusion and enhancing T cell immunity

Latour, Y. L., Allaman, M. M., Barry, D. P., Smith, T. M., Williams, K. J., McNamara, K. M., Jacobse, J., Goettel, J. A., Delgado, A. G., Piazuelo, M. B., et al. (2023) · Gut Microbes · doi:10.1080/19490976.2023.2192623 · Cited by 8

Early-Life Fecal Transplantation from High Muscle Yield Rainbow Trout to Low Muscle Yield Recipients Accelerates Somatic Growth through Respiratory and Mitochondrial Efficiency Modulation

Raymo, G., Ali, A., Ahmed, R. O., & Salem, M. (2024) · Microorganisms · doi:10.3390/microorganisms12020261 · Cited by 7

Both pathogen and host dynamically adapt pH responses along the intestinal tract during enteric bacterial infection

Woodward, S. E., Neufeld, L. M. P., Peña-Díaz, J., Feng, W., Serapio-Palacios, A., Tarrant, I., Deng, W., & Finlay, B. B. (2024) · PLoS Biology · doi:10.1371/journal.pbio.3002761 · Cited by 7

Type III secretion system effector subnetworks elicit distinct host immune responses to infection

Sanchez‐Garrido, J., Alberdi, L., Chatterjee, S., Frankel, G. M., & Mullineaux-Sanders, C. (2021) · Current Opinion in Microbiology · doi:10.1016/j.mib.2021.08.008 · Cited by 6

Simulated Colonic Fluid Replicates the In Vivo Growth Capabilities of Citrobacter rodentium cpxRA Mutants and Uncovers Additive Effects of Cpx-Regulated Genes on Fitness

Gilliland, A., Gavino, C., Gruenheid, S., & Raivio, T. L. (2022) · Infection and Immunity · doi:10.1128/iai.00314-22 · Cited by 7

Evaluation of the protective effect of the intranasal vaccines adjuvanted with bacterium-like particles against intestinal infection

Tsujii, A., Takahashi, K., Harada, H., Kawashima, S., Oikawa, H., Fukushima, H., Hayakawa, Y., Koizumi, J., Inoue, N., & Koshizuka, T. (2024) · Vaccine · doi:10.1016/j.vaccine.2024.05.023 · Cited by 6

Butyrate and Intestinal Homeostasis: Effects on the Intestinal Microbiota and Epithelial Hypoxia

Bortoluzzi, C., Castro, F. L. D. S., & Kogut, M. H. (2022) · The microbiomes of humans, animals, plants, and the environment · doi:10.1007/978-3-030-90303-9_4 · Cited by 6

Cystic fibrosis and inflammatory bowel disease: parallels in gut physiology and microbiota

Barrack, K. E., & O’Toole, G. A. (2025) · Journal of Bacteriology · doi:10.1128/jb.00167-25 · Cited by 6

A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations

Darrigade, L., Haghebaert, M., Cherbuy, C., Labarthe, S., & Laroche, B. (2022) · Journal of Mathematical Biology · doi:10.1007/s00285-022-01766-8 · Cited by 5

Non‐zero‐sum microbiome immune system interactions

Tuganbaev, T., & Honda, K. (2021) · European Journal of Immunology · doi:10.1002/eji.202049065 · Cited by 7

Cross-kingdom dialogs in the gut: Integrating bacterial pathogens, helminths, and microbiota interactions for immune homeostasis

Hu, S., Liu, Z., Yan, W., & Guo, R. (2025) · PLoS Pathogens · doi:10.1371/journal.ppat.1013494 · Cited by 6

Role of the intestinal microbiota in sepsis-associated encephalopathy

Zhang, M. M., Xiao, D., He, T., Guo, L., & Yang, X. (2025) · Burns & Trauma · doi:10.1093/burnst/tkaf070 · Cited by 4

The sympathetic nervous system enhances host immune responses to enteric bacterial pathogens in mice

Tay, E. X. Y., Cremin, M., Sanchez, K., Llyod, E., Brust‐Mascher, I., & Reardon, C. (2025) · Brain Behavior and Immunity · doi:10.1016/j.bbi.2025.07.014 · Cited by 4

Gut bacterial dysbiosis in pediatric severe malaria associates with post-discharge mortality

Bednarski, O. J., Lehman, S. M., Mzinza, D. T., Kazinga, C., Namazzi, R., Opoka, R. O., Ren, J., Tran, T. M., Taylor, T. E., Seydel, K. B., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-64632-3 · Cited by 4

Interactions of Pathogenic Escherichia coli with Gut Microbiota

Miliwebsky, E. S., Jure, M. Á., Farfán, M. J., & Palermo, M. S. (2023) · Springer eBooks · doi:10.1007/978-3-031-29882-0_12 · Cited by 4

Infection and ImmunityWelcomes the New Microbiology

Bäumler, A. J. (2017) · Infection and Immunity · doi:10.1128/iai.00255-17 · Cited by 4

Cytochrome bd-II oxidase CyxA promotes the pathogenicity of Klebsiella pneumoniae by resisting oxidative stress

Xiao, X., Song, G., Lu, H., Zheng, W., Meng, P., Peng, W., Yang, J., Wang, M., Zhu, J., Wang, J., et al. (2025) · Virulence · doi:10.1080/21505594.2025.2590244 · Cited by 3

Unveiling the mystery of ILC3s: Their functions and interactions in mucosal immunity

Liang, B., & Xing, D. (2023) · International Immunopharmacology · doi:10.1016/j.intimp.2023.110772 · Cited by 3

Microbiota of the Gut: Antibiotic-Induced Dysbiosis and the Adverse Effects on Human Health

Morozov, I. Y. (2018) · Academic Journal of Gastroenterology & Hepatology · doi:10.33552/ajgh.2018.01.000504 · Cited by 3

Transcriptional Response of Pectobacterium carotovorum to Cinnamaldehyde Treatment

Jung, J., Jo, D., & Kim, S.-J. (2023) · Journal of Microbiology and Biotechnology · doi:10.4014/jmb.2311.11043 · Cited by 3

Gut microbes regroup to aid defence after infection

Kendall, M. M., & Sperandio, V. (2021) · Nature · doi:10.1038/d41586-021-00642-7 · Cited by 3

Interplay between the gut microbiome and typhoid fever: insights from endemic countries and a controlled human infection model

Ashton, P., Mageiros, L., Meiring, J., Chirambo, A. C., Khanam, F., Dongol, S., Banda, H., Karkey, A., Preciado‐Llanes, L., Thomaides-Brears, H. B., et al. (2025) · Microbiome · doi:10.1186/s40168-025-02125-7 · Cited by 4

Effect of supplementation with synbiotics in metabolic syndrome: mechanisms and clinical implications

Abenavoli, L., YOSYPENKO, K., YURCHYSHENA, Y., Savytska, M., Lazarieva, O., Shvets, Y. V., Scarlata, G. G. M., Lynchak, O. V., & Falalyeyeva, T. M. (2026) · Minerva Gastroenterology · doi:10.23736/s2724-5985.25.04054-9 · Cited by 3

A novel antibacterial strategy for targeting the bacterial methionine biosynthesis pathway

Bin, P., Liu, W., Zhang, X., Liu, B., & Zhu, G. (2023) · International Journal of Antimicrobial Agents · doi:10.1016/j.ijantimicag.2023.107057 · Cited by 2

Cuts Both Ways: Proteases Modulate Virulence of Enterohemorrhagic Escherichia coli

Palmer, L. D., & Skaar, E. P. (2019) · mBio · doi:10.1128/mbio.00115-19 · Cited by 2

Comparative transcriptional profiling of the early host response to infection by typhoidal and non-typhoidal Salmonella serovars in human intestinal organoidsPreprint

Abuaita, B. H., Lawrence, A.-L. E., Berger, R. P., Hill, D. R., Huang, S., Yadagiri, V. K., Bons, B., Fields, C., Wobus, C. E., Spence, J. R., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.11.25.397620 · Cited by 2

Gut microbiota as a factor in epigenetic programming of the phenotypes of obesity and type 2 diabetes mellitus. Review

Shyshkan-Shyshova, К. О., & Zinych, О. В. (2021) · Clinical endocrinology and endocrine surgery · doi:10.30978/cees-2021-2-75 · Cited by 1

Carbon source, cell density, and the microbial community control inhibition of V. cholerae surface colonization by environmental nitrate

James, J., Santos, R. E. R. D. S., & Watnick, P. I. (2025) · mBio · doi:10.1128/mbio.04066-24 · Cited by 1

Enterohemorrhagic Escherichia coli senses colonic oxygen availability to modulate its virulence and colonization

Fang, F., Li, Y., Zhong, Y., Xu, X., Ouyang, T., Han, J., Dou, L., Xue, Y., & Wang, D. (2026) · iScience · doi:10.1016/j.isci.2026.115632 · Cited by 1

Infection strategies of Salmonella Typhimurium for gut-lumen colonization: Overcoming host defenses, exploiting host responses, and adapting to the enteric niche

Miki, T., Ito, M., Haneda, T., Okada, N., & Kim, Y. (2026) · Gut Microbes Reports · doi:10.1080/29933935.2026.2671472 · Cited by 1

Pathogenesis of proliferative enteropathy caused by Lawsoniaintracellularis.

McOrist, S., & Moore, S. (2026) · Journal of Comparative Pathology · doi:10.1016/j.jcpa.2026.05.006 · Cited by 1

Barrier immune memory is programmed by intestinal epithelial cell presentation of cytosol-delivered bacterial antigens

Wilson, C. G., Acharya, M. P., Karsch, L., Duck, L. W., Twumasi-Ankrah, N., Wang, Y., Shen, H., Frey, B. F., McKee, A. R., Oza, V. H., et al. (2026) · Nature Immunology · doi:10.1038/s41590-026-02656-7 · Cited by 3

The Emergence of a New Human Superorganism After Organ Transplantation

Prasad, G. V. R. (2017) · UWSpace (University of Waterloo)

Antioxidants maintain Butyrate production by Human Gut Clostridia in the presence of OxygenPreprint

Million, M., Armstrong, N., Khelaifia, S., Guilhot, E., Richez, M., Lagier, J., Dubourg, G., Chabrière, É., & Raoult, D. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/652958

Исторический анализ сущности понятия «Реабилитация» в системе специального образования

Зак, Г. Г. (2012) · Специальное образование

Simulated colonic fluid replicates the in vivo growth capabilities of Citrobacter rodentium mutants and highlights a critical role for the Cpx envelope stress response in mediating stressors encountered in the gastrointestinal tractPreprint

Gilliland, A., Gavino, C., Gruenheid, S., & Raivio, T. L. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.12.13.472529

Impact of indigenous microbiota in gut inflammatory disorders

Arifa, R. D. D. N., de Brito, C. B., Batista, R. R. A., Fagundes, M., Souza, D. G., & Fagundes, C. T. (2022) · Elsevier eBooks · doi:10.1016/b978-0-323-91313-3.00011-8

Function of Epithelial Barriers

Cadwell, K., & Marchiando, A. M. (2022) · Elsevier eBooks · doi:10.1016/b978-0-12-821618-7.00254-6

Understanding STEC epidemiology and predominance of O157:H-negative in Australia: Genetic characterisation and virulence assessment of STEC isolates

Pintara, A. P. (2022) · Queensland University of Technology · doi:10.5204/thesis.eprints.229023

Durchfallerreger und die Homöostase der Mikrobiota

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Does gut oxygenation drive colorectal cancer?

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Salmonella exploits a quorum-sensing family signal of the gut commensal Stenotrophomonas maltophilia to facilitate its colonization

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Metabolic strategies of Enterobacteriaceae gut colonization

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Tac1 deficiency reduces the severity of enteric bacterial infection

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Feeding a low-protein diet exacerbates the susceptibility to Citrobacter rodentium and dextran sulfate sodium-induced intestinal injury in mice

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Miller, B. (2021) · eScholarship (California Digital Library)

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