Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
Farrell, Jeffrey A., Wang, Yiqun, Riesenfeld, Samantha J., Shekhar, Karthik, Regev, Aviv, Schier, Alexander F.·2018·Science
Cited by (842)
Items 301–400 of 842
- Brachyury in the gastrula of basal vertebratesAshley E.E. Bruce, Rudolf Winklbauer · 2020 · Mechanisms of Development
- Geometry and statistics-preserving manifold embedding for nonlinear dimensionality reductionMd Tauhidul Islam, Lei Xing · 2021 · Pattern Recognition Letters
- A fishy tail: Insights into the cell and molecular biology of neuromesodermal cells from zebrafish embryosBenjamin L. Martin, Benjamin Steventon · 2022 · Developmental Biology
- Droplet Microfluidics for High-Resolution VirologyWenyang Jing, Hee‐Sun Han · 2022 · Analytical Chemistry
- Disentangling cellular heterogeneity into interpretable biological factors through structured latent representationsAmir Ali Moinfar, Fabian Joachim Theis · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Cell‐Type‐Specific and Variety‐Specific Responses to Salt Stress in Wheat Root Revealed by Single‐Cell TranscriptomicsLin Du, Wenqiu Pan, Yali Song, Fuyan Liu, Yanzhe Jia, Cai Wei, Xinchun Li, Yong Hou, Xiaojun Nie, Hai‐Xi Sun et al. · 2025 · Plant Biotechnology Journal
- Cell competition controls differentiation in mouse embryos and stem cellsMasakazu Hashimoto, Hiroshi Sasaki · 2020 · Current Opinion in Cell Biology
- Kinetic modeling of stem cell transcriptome dynamics to identify regulatory modules of normal and disturbed neuroectodermal differentiationJohannes Meisig, Nadine Dreser, Marion Kapitza, Margit Henry, Tamara Rotshteyn, Jörg Rahnenführer, Jan Georg Hengstler, Agapios Sachinidis, Tanja Waldmann, Marcel Leist et al. · 2020 · Nucleic Acids Research
- The Evolving Faces of the SARS-CoV-2 GenomeMaria Schmidt, Mamoona Arshad, Stephan H. Bernhart, Siras Hakobyan, Arsen Arakelyan, Henry Loeffler‐Wirth, Hans Binder · 2021 · Viruses
- Dissecting the genetic and microenvironmental factors of gastric tumorigenesis in miceZhenghao Lu, Ailing Zhong, Hongyu Liu, Mengsha Zhang, Xuelan Chen, Xiangyu Pan, Manli Wang, Xintong Deng, Limin Gao, Lin-Yong Zhao et al. · 2022 · Cell Reports
- Integrative insights and clinical applications of single-cell sequencing in cancer immunotherapyZaoqu Liu, Huanyun Li, Qin Dang, Siyuan Weng, Mengjie Duo, Jinxiang Lv, Xinwei Han · 2022 · Cellular and Molecular Life Sciences
- Benchmarking differential abundance methods for finding condition-specific prototypical cells in multi-sample single-cell datasetsHaidong Yi, Alec L. Plotkin, Natalie Stanley · 2024 · Genome biology
- A statistical method for quantifying progenitor cells reveals incipient cell fate commitmentsShanjun Deng, Han Gong, Di Zhang, Mengdong Zhang, Xionglei He · 2024 · Nature Methods
- Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seqKeyong Sun, Xin Liu, Runda Xu, Chang Liu, Anming Meng, Xun Lan · 2024 · Nature Cell Biology
- Cell state transitions are decoupled from cell division during early embryo developmentKalki Kukreja, Bill Jia, Sean E. McGeary, Nikit Patel, Sean G. Megason, Allon Moshe Klein · 2024 · Nature Cell Biology
- A single-cell mass cytometry-based atlas of the developing mouse brainAmy Lynnette Van Deusen, Sushanth Kumar, O. Yipkin Calhan, Sarah M. Goggin, Jiachen Shi, Corey M. Williams, Austin B. Keeler, Kristen Fread, Irene C. Gadani, Christopher D. Deppmann et al. · 2024 · Nature Neuroscience
- Endogenous CRISPR/Cas9 arrays for scalable whole-organism lineage tracingJames Cotterell, Marta Vila-Cejudo, Laura Batlle‐Morera, James A. Sharpe · 2020 · Development
- Parallel Genomic Changes Drive Repeated Evolution of Placentas in Live-Bearing FishHenri van Kruistum, Reindert Nijland, David N. Reznick, Martien A. M. Groenen, Hendrik‐Jan Megens, Bart J. A. Pollux · 2021 · Molecular Biology and Evolution
- Single-Cell RNA Sequencing Atlas From a Bivalve Larva Enhances Classical Cell Lineage StudiesDavid A. Salamanca-Díaz, Stephan M. Schulreich, Alison G. Cole, Andreas Wanninger · 2022 · Frontiers in Ecology and Evolution
- stVCR: spatiotemporal dynamics of single cellsQiangwei Peng, Peijie Zhou, Tiejun Li · 2026 · Nature Methods
- Reconstructing developmental landscapes and trajectories from single-cell dataGeoffrey R. Schiebinger · 2021 · Current Opinion in Systems Biology
- The role of single-cell genomics in human geneticsVarun K. A. Sreenivasan, Saranya Balachandran, Malte Spielmann · 2022 · Journal of Medical Genetics
- Temporal Dynamic Analysis of Alternative Splicing During Embryonic Development in ZebrafishZhe Liu, Wei Wang, Xinru Li, Xiujuan Zhao, Hongyu Zhao, Wuritu Yang, Yongchun Zuo, Lu Cai, Yongqiang Xing · 2022 · Frontiers in Cell and Developmental Biology
- Origin, form and function of extraembryonic structures in teleost fishesMiguel Luis Concha, Germán Reig · 2022 · Philosophical Transactions of the Royal Society B Biological Sciences
- A Mesp1 -dependent developmental breakpoint in transcriptional and epigenomic specification of early cardiac precursorsAlexis Leigh Krup, Sarah A. B. Winchester, Sanjeev S. Ranade, Ayushi Agrawal, Walter Patrick Devine, Tanvi Sinha, Krishna Choudhary, Martin H. Dominguez, Reuben Thomas, Brian L. Black et al. · 2023 · Development
- Integrative scATAC-seq and scRNA-seq analyses map thymic iNKT cell development and identify Cbfβ for its commitmentJie Wang, Indra Adrianto, Kalpana Subedi, Tingting Liu, Xiaojun Wu, Qijun Yi, Ian M. Loveless, Congcong Yin, Indrani Datta, Derek B. Sant’Angelo et al. · 2023 · Cell Discovery
- scPair: Boosting single cell multimodal analysis by leveraging implicit feature selection and single cell atlasesHongru Hu, Gerald Quon · 2024 · Nature Communications
- Induced pluripotent stem cells for disease modeling, cell therapy and drug discovery in genetic autonomic disorders: a reviewKenyi Saito‐Diaz, Nadja Zeltner · 2019 · Clinical Autonomic Research
- Packaging development: how chromatin controls transcription in zebrafish embryogenesisJulia A. Horsfield · 2019 · Biochemical Society Transactions
- Longitudinal single-cell RNA-seq of hESCs-derived retinal organoidsShaojun Wang, Sergio Poli, Xiaoliang Liang, Guang-Hua Peng · 2021 · Science China Life Sciences
- Expanding role of vitamin E in protection against metabolic dysregulation: Insights gained from model systems, especially the developing nervous system of zebrafish embryosBrian Head, Maret G. Traber · 2021 · Free Radical Biology and Medicine
- ClustAssess: tools for assessing the robustness of single-cell clusteringArash Shahsavari, Andi Munteanu, Irina I Mohorianu · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- A ligand-receptor interactome atlas of the zebrafish2023
- Establishing dorsal-ventral patterning in human neural tube organoids with synthetic organizersTao Luo, Cong Liu, Tao Cheng, Guo-Qin Zhao, Ying Huang, Jing-Yun Luan, Junyu Guo, Xiang Liu, Yi-Fan Wang, Yang Dong et al. · 2025 · Cell stem cell
- TedSim: temporal dynamics simulation of single-cell RNA sequencing data and cell division historyXinhai Pan, Hechen Li, Xiuwei Zhang · 2022 · Nucleic Acids Research
- Accurate prediction of functional states of cis-regulatory modules reveals common epigenetic rules in humans and micePengyu Ni, Joshua Moe, Zhengchang Su · 2022 · BMC Biology
- Supervised learning of high-confidence phenotypic subpopulations from single-cell dataTao Ren, Canping Chen, Alexey Valeryevich Danilov, Susan Liu, Xiangnan Guan, Shunyi Du, Xiwei Wu, Mara H. Sherman, Paul T. Spellman, Lisa M. Coussens et al. · 2023 · Nature Machine Intelligence
- Reconstructing cell lineage trees with genomic barcoding: approaches and applicationsZizhang Li, Wenjing Yang, Peng Wu, Yuyan Shan, Xiaoyu Zhang, Feng Chen, Junnan Yang, Jian-Rong Yang · 2023 · Journal of genetics and genomics/Journal of Genetics and Genomics
- DELVE: feature selection for preserving biological trajectories in single-cell dataJolene S. Ranek, Wayne Stallaert, J. Justin Milner, Margaret A. Redick, Samuel C. Wolff, Adriana S. Beltrán, Natalie Stanley, Jeremy E. Purvis · 2024 · Nature Communications
- Evolutionary origin of the chordate nervous system revealed by amphioxus developmental trajectoriesYichen Dai, Yanhong Zhong, Rongrong Pan, Liang Yuan, Yongheng Fu, Yuwei Chen, Juan Du, Meng Li, Xiao Wang, Huimin Liu et al. · 2024 · Nature Ecology & Evolution
- The fate of cells undergoing spontaneous DNA damage during developmentAgnès Miermont, Vlatka Antolović, Tchern Lenn, John M E Nichols, Lindsey J. Millward, Jonathan Robert Chubb · 2019 · Development
- Random Parametric Perturbations of Gene Regulatory Circuit Uncover State Transitions in Cell CycleAtaur Katebi, Vivek Kohar, Mingyang Lu · 2020 · iScience
- Multiplexed optical barcoding of cells via photochemical programming of bioorthogonal host–guest recognitionArka Som, Meenakshi Pahwa, Sumit Bawari, Nilanjana Das Saha, Ranjan Sasmal, Monica Swetha Bosco, Jagannath Mondal, Sarit S. Agasti · 2021 · Chemical Science
- High-Throughput, Comprehensive Single-Cell Proteomic Analysis of Xenopus laevis Embryos at the 50-Cell Stage Using a Microplate-Based MICROFASP SystemZhenbin Zhang, Kyle M. Dubiak, Evgenia Shishkova, Paul W. Huber, Joshua J. Coon, Norman J. Dovic̀hi · 2022 · Analytical Chemistry
- Single-cell RNA sequencing reveals tissue-specific transcriptomic changes induced by perfluorooctanesulfonic acid (PFOS) in larval zebrafish (Danio rerio)Kruuttika M. Satbhai, Emily Marques, Ravi Ranjan, Alicia R. Timme‐Laragy · 2025 · Journal of Hazardous Materials
- HelPredictor models single-cell transcriptome to predict human embryo lineage allocationPengfei Liang, Lei Zheng, Chunshen Long, Wuritu Yang, Lei Yang, Yongchun Zuo · 2021 · Briefings in Bioinformatics
- Two distinct waves of transcriptome and translatome changes drive Drosophila germline stem cell differentiationTamsin J. Samuels, Jinghua Gui, Daniel Gebert, Felipe Karam Teixeira · 2024 · The EMBO Journal
- Single-cell multi-modal integrative analyses highlight functional dynamic gene regulatory networks directing human cardiac developmentAlyssa R. Holman, Shaina Tran, Eugin Destici, Elie N. Farah, Ting Li, Aileena C Nelson, Adam Jeffrey Engler, C. Neil · 2024 · Cell Genomics
- Interpreting Single-Cell and Spatial Omics Data Using Deep Neural Network Training DynamicsKarin, Jonathan, Mintz, Reshef, Raveh, Barak, Nitzan, Mor · 2024 · Nature Computational Science
- Development and regeneration dynamics of the Medaka notochordAli Seleit, Karen Groß, Jasmin Onistschenko, Michaela Woelk, Camilla Autorino, Lázaro Centanin · 2020 · Developmental Biology
- DTFLOW: Inference and Visualization of Single-Cell Pseudotime Trajectory Using Diffusion PropagationJiangyong Wei, Tianshou Zhou, Xinan Zhang, Tianhai Tian · 2021 · Genomics Proteomics & Bioinformatics
- Single-cell RNA sequencing in diabetic kidney disease: a literature reviewWei Tan, Jiaoyan Chen, Yunyan Wang, Xiang Kui, Xianqiong Lu, Qiuyu Han, Mingyue Hou, Jurong Yang · 2024 · Renal Failure
- Macrophages directly kill bladder cancer cells through TNF signaling as an early response to BCG therapyMayra Fernanda Martínez-López, Cátia Rebelo de Almeida, Márcia Fontes, Raquel Valente Mendes, Stefan H. E. Kaufmann, Rita Fior · 2024 · Disease Models & Mechanisms
- Gastruloids are competent to specify both cardiac and skeletal muscle lineagesLaurent Argiro, Céline Chevalier, Caroline Choquet, Nitya Nandkishore, Adeline Spiga Ghata, Anaı̈s Baudot, Stéphane Zaffran, Fabienne Lescroart · 2024 · Nature Communications
- CALISTA: Clustering and LINEAGE Inference in Single-Cell Transcriptional AnalysisNan Papili Gao, Thomas Hartmann, Tao Fang, Rudiyanto Gunawan · 2020 · Frontiers in Bioengineering and Biotechnology
- Wnt signaling regulates neural plate patterning in distinct temporal phases with dynamic transcriptional outputsDavid J. Green, Amy E. Whitener, Saurav Mohanty, Brandon Mistretta, Preethi H. Gunaratne, Alvin T. Yeh, Arne C. Lekven · 2020 · Developmental Biology
- Macrophages play a role in inflammatory transformation of colorectal cancerLu Lu, Yu-Jing Liu, Peiqiu Cheng, Dan Hu, Han-Chen Xu, Guang Ji · 2021 · World Journal of Gastrointestinal Oncology
- scSemiAE: a deep model with semi-supervised learning for single-cell transcriptomicsJiayi Dong, Yin Zhang⋆, Fei Wang · 2022 · BMC Bioinformatics
- Expression of myelin transcription factor 1 and lamin B receptor mediate neural progenitor fate transition in the zebrafish spinal cord pMN domainLingyan Xing, Rui Chai, Jiaqi Wang, Jiaqi Lin, Hanyang Li, Yueqi Wang, Bi‐Qin Lai, Junjie Sun, Gang Chen · 2022 · Journal of Biological Chemistry
- Origin and diversification of fibroblasts from the sclerotome in zebrafishC. Roger, Katrinka M. Kocha, Emilio E. Méndez‐Olivos, Tyler D. Ruel, Peng Huang · 2023 · Developmental Biology
- Analysis of cardiac single-cell RNA-sequencing data can be improved by the use of artificial-intelligence-based toolsThanh Minh Nguyen, Yuhua Wei, Yuji Nakada, Jake Y. Chen, Yang Zhou, Gregory P. Walcott, Jianyi Jay Zhang · 2023 · Scientific Reports
- Zebrahub-Multiome: Uncovering Gene Regulatory Network Dynamics During Zebrafish EmbryogenesisYang Joon Kim, Shruthi VijayKumar, Benjamin Giovanni Iovino, Alejandro A. Granados, Sarah Ancheta, Max Frank, Xiang Zhao, Kyle Awayan, Amanda Seng, Michael Borja et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Cluster-independent marker feature identification from single-cell omics data using SEMITONESAnna Hendrika Cornelia Vlot, Setareh Maghsudi, Uwe Ohler · 2022 · Nucleic Acids Research
- Craniofacial developmental biology in the single-cell eraKuo-Chang Tseng, Justin Gage Crump · 2023 · Development
- Neural cell diversity in the light of single-cell transcriptomicsSandra M. Fernández Moya, Akshay Jaya Ganesh, Mireya Plass · 2023 · Transcription
- A synthetic differentiation circuit in Escherichia coli for suppressing mutant takeoverDavid S. Glass, Anat Bren, Elizabeth Vaisbourd, Avi Mayo, Uri S. Alon · 2024 · Cell
- Advances in mass spectrometry-enabled multiomics at single-cell resolutionRashmi Kumar, Kevin J. Zemaitis, James M. Fulcher, Ljiljana Paša‐Tolić · 2024 · Current Opinion in Biotechnology
- The zebrafish as a potential model for vaccine and adjuvant developmentPeter Jay Hotez, María Elena Bottazzi, Nelufa Islam, Jungsoon Lee, Jeroen B. K. Pollet, Cristina Poveda, Ulrich Strych, Syamala Rani Thimmiraju, Nestor Luis Uzcategui, Leroy Versteeg et al. · 2024 · Expert Review of Vaccines
- Rbpms2 promotes female fate upstream of the nutrient sensing Gator2 complex component MiosMiranda Wilson, Shannon N. Romano, N. Khatri, Devora A. Aharon, Yulong Liu, Odelya H. Kaufman, Bruce W. Draper, Florence L. Marlow · 2024 · Nature Communications
- Media composition modulates human embryonic stem cell morphology and may influence preferential lineage differentiation potentialLinda Harkness, Xiaoli Chen, Marianne Gillard, Peter P. Gray, Anthony Mitchell Davies · 2019 · PLoS ONE
- Lipid Alterations during Zebrafish Embryogenesis Revealed by Dynamic Mass Spectrometry Profiling with C=C SpecificityXu Zhao, Jing Chen, Weiying Zhang, Chengdui Yang, Xiaoxiao Ma, Sichun Zhang, Xinrong Zhang · 2019 · Journal of the American Society for Mass Spectrometry
- Zebrafish as a Neuroblastoma Model: Progress Made, Promise for the FutureShuai Li, Kok Siong Yeo, Taylor M. Levee, Cassie J. Howe, Zuag Paj Her, Shizhen Zhu · 2021 · Cells
- Neural crest multipotency and specification: power and limits of single cell transcriptomic approachesKristin Artinger, Anne Helene Monsoro-Burq · 2021 · Faculty Reviews
- An analytical framework for interpretable and generalizable single-cell data analysisJian Zhou, Olga G. Troyanskaya · 2021 · Nature Methods
- Advances in single‐cell sequencing and its application to musculoskeletal system researchYongxiang Zhang, Jingkai Wang, Chao Yu, Kaishun Xia, Biao Yang, Yuang Zhang, Liwei Ying, Chenggui Wang, Xianpeng Huang, Qixin Chen et al. · 2021 · Cell Proliferation
- Age-Associated Different Transcriptome Profiling in Zebrafish and Rats: an Insight into the Diversity of Vertebrate AgingYusuke Kijima, Wang Wantong, Yoji Igarashi, Kazutoshi Yoshitake, Shuichi Asakawa, Yutaka Suzuki, Shugo Watabe, Shigeharu Kinoshita · 2022 · Marine Biotechnology
- Developmental scRNAseq Trajectories in Gene- and Cell-State Space—The Flatworm ExampleMaria Schmidt, Henry Loeffler‐Wirth, Hans Binder · 2020 · Genes
- Stem cell differentiation trajectories in Hydra resolved at single-cell resolutionStefan Siebert, Jeffrey A. Farrell, Jack F. Cazet, Yashodara Abeykoon, Abby S. Primack, Christine E. Schnitzler, Celina E. Juliano · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
- Discovering a sparse set of pairwise discriminating features in high-dimensional dataSamuel Melton, Sharad Ramanathan · 2020 · Bioinformatics
- Single-cell transcriptome atlas of Drosophila gastrula 2.0Shunta Sakaguchi, Sonoko Mizuno, Yasushi Okochi, Chiharu Tanegashima, Osamu Nishimura, Tadashi Uemura, Mitsutaka Kadota, Honda Naoki, Takefumi Kondo · 2023 · Cell Reports
- Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inferenceXiaoru Dong, Jack R. Leary, Chuanhao Yang, Maigan Brusko, Todd M. Brusko, Rhonda L. Bacher · 2024 · Briefings in Bioinformatics
- Macrophage P2Y12 regulates iron transport and its inhibition protects against atherosclerosisYang-Xi Hu, Hong-Min You, Mei-Rong Bai, Wen-Heng Yue, Fangfang Li, Bowen Hu, Ya-Sha Chen, Xiangyu Shen, Yue Wu, Jia-Mei Wang et al. · 2024 · Journal of Advanced Research
- Bloody Zebrafish: Novel Methods in Normal and Malignant HematopoiesisEmma de Pater, Eirini Trompouki · 2018 · Frontiers in Cell and Developmental Biology
- Single cell genomics and developmental biology: moving beyond the generation of cell type cataloguesMai-Linh Nu Ton, Carolina Guibentif, Berthold Göttgens · 2020 · Current Opinion in Genetics & Development
- Stochastic models for single‐cell data: Current challenges and the way forwardIan Shen Hsu, Alan M Moses · 2021 · FEBS Journal
- Conditional specification of endomesodermDavid R. McClay, Jenifer C. Croce, Jacob F. Warner · 2021 · Cells and Development
- Single-cell analysis of cell fate bifurcation in the chordate CionaKonner Winkley, Wendy Reeves, Michael T. Veeman · 2021 · BMC Biology
- Advances in Single-Cell Multi-Omics and Application in Cardiovascular ResearchXingwu Zhang, Hui Qiu, Fengzhi Zhang, Shuangyuan Ding · 2022 · Frontiers in Cell and Developmental Biology
- Gastrulation-stage gene expression in Nipbl +/− mouse embryos foreshadows the development of syndromic birth defectsStephenson Chea, Jesse Kreger, Martha E. Lopez‐Burks, Adam L. MacLean, Arthur D. Lander, Anne L. Calof · 2024 · Science Advances
- Ionising Radiation Induces Promoter DNA Hypomethylation and Perturbs Transcriptional Activity of Genes Involved in Morphogenesis during Gastrulation in ZebrafishSophia Murat El Houdigui, Christelle Adam‐Guillermin, Olivier Armant · 2020 · International Journal of Molecular Sciences
- Cardiac specification during gastrulation – The Yellow Brick Road leading to TinmanNathan Stutt, Mengyi Song, Michael D. Wilson, Ian C. Scott · 2021 · Seminars in Cell and Developmental Biology
- Dynamics and plasticity of stem cells in the regenerating human colonic epitheliumKoen C. Oost, Maurice Kahnwald, Silvia Barbiero, Gustavo de Medeiros, Simon Suppinger, Véronique Kalck, Ludivine Challet Meylan, Sébastien A. Smallwood, Michael B. Stadler, Prisca Liberali · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Dissecting the regulatory logic of specification and differentiation during vertebrate embryogenesisJialin Liu, Sebastian M. Castillo-Hair, Lucia Y. Du, Yiqun Wang, Adam N. Carte, Mariona Colomer-Rosell, Christopher Yin, Georg Seelig, Alexander F. Schier · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- CXCR3-CXCL11 Signaling Restricts Angiogenesis and Promotes Pericyte RecruitmentJ M Lee, Megan E. Goeckel, Allison Levitas, Sarah Colijn, Jimann Shin, Anna E. Hindes, Geonyoung Mun, Zarek Burton, Bharadwaj Chintalapati, Ying Yin et al. · 2024 · Arteriosclerosis Thrombosis and Vascular Biology
- Polyethylene microplastics perforate the chorion defense, triggering developmental cardiotoxicity at zebrafishYejin Kim, Hyerin Lee, Yun Hak Kim, Chang‐Kyu Oh · 2025 · Aquatic Toxicology
- Single-nucleus profiling highlights the all-brain echinoderm nervous systemPeriklis Paganos, Jack Ullrich-Lüter, Alba Almazán, Danila Voronov, Jil Carl, Anne-C. Zakrzewski, Berit Zemann, Maria Lorenza Rusciano, Tiphaine Sancerni, Maria Schauer et al. · 2025 · Science Advances
- Integrating temporal single-cell gene expression modalities for trajectory inference and disease predictionJolene S. Ranek, Natalie Stanley, Jeremy E. Purvis · 2022 · Genome biology
- scASGC: An adaptive simplified graph convolution model for clustering single-cell RNA-seq dataShudong Wang, Yunxin Zhang, Yulin Zhang, Wenhao Wu, Lan Ye, Yunyin Li, Jionglong Su, Shanchen Pang · 2023 · Computers in Biology and Medicine
- Single-Cell Heterogeneity in Snake Venom Expression Is Hardwired by Co-Option of Regulators from Progressively Activated PathwaysAundrea K. Westfall, Siddharth S. Gopalan, Blair W. Perry, Richard H. Jr. Adams, Anthony J. Saviola, Stephen P. Mackessy, Todd A. Castoe · 2023 · Genome Biology and Evolution
- Inference of Developmental Gene Regulatory Networks Beyond Classical Model Systems: New Approaches in the Post-genomic EraSelene L. Fernández-Valverde, Felipe Aguilera, René Alexander Ramos-Díaz · 2018 · Integrative and Comparative Biology