Carbon Isotope Fractionation of 11 Acetogenic Strains Grown on H 2 and CO 2
Open accessAbstract
Acetogenic bacteria are able to grow autotrophically on hydrogen and carbon dioxide by using the acetyl coenzyme A (acetyl-CoA) pathway. Acetate is the end product of this reaction. In contrast to the fermentative route of acetate production, which shows almost no fractionation of carbon isotopes, the acetyl-CoA pathway has been reported to exhibit a preference for light carbon. In Acetobacterium woodii the isotope fractionation factor (ε) for 13 C and 12 C has previously been reported to be ε = −58.6‰. To investigate whether such a strong fractionation is a general feature of acetogenic bacteria, we measured the stable carbon isotope fractionation factor of 10 acetogenic strains grown on H 2 and CO 2 . The average fractionation factor was ε TIC = −57.2‰ for utilization of total inorganic carbon and ε acetate = −54.6‰ for the production of acetate. The strongest fractionation was found for Sporomusa sphaeroides (ε TIC = −68.3‰), the lowest fractionation for Morella thermoacetica (ε TIC = −38.2‰). To investigate the reproducibility of our measurements, we determined the fractionation factor of 21 biological replicates of Thermoanaerobacter kivui . In general, our study confirmed the strong fractionation of stable carbon during chemolithotrophic acetate formation in acetogenic bacteria. However, the specific characteristics of the bacterial strain, as well as the cultural conditions, may have a moderate influence on the overall fractionation.
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Isotopically ultralight carbon is reported in 3.8 Ga sediment carbon, suggesting the presence of the acetyl-CoA pathway without discriminating an acetogen or methanogen source.
“Isotopically ultralight carbon is also reported in 3.8 Ga sediment carbon [66, 67], which suggests the presence of the acetyl‐CoA pathway [68] without discriminating an acetogen or methanogen source.”
From Evidence for corrin biosynthesis in the last universal common ancestor (2025) · cites this paper as [68]
Isotope data trace the ultralight isotope signature of the acetyl-CoA pathway back to > 3.5 Ga, consistent with the structural and phylogenetic evidence for the age of corrins.
“Isotope data trace the ultralight isotope signature of the acetyl‐CoA pathway [68] back to > 3.5 Ga [65, 66], consistent with the structural (Fig. 3) and phylogenetic (Fig. 5) evidence for the age of corrins.”
From Evidence for corrin biosynthesis in the last universal common ancestor (2025) · cites this paper as [68]
Biotic methane is isotopically light because of isotope discrimination in favor of 12C in the acetyl-CoA pathway of methyl synthesis from H2 and CO2 underpinning methanogenesis.
“Abiotic methane is enriched in 13C relative to biotic methane, which is isotopically light because of isotope discrimination in favor of 12C in the acetyl-CoA pathway (Blaser et al., 2013) of methyl synthesis from H2 and CO2 underpinning methanogenesis.”
From Serpentinization as the source of energy, electrons, organics, catalysts, nutrients and pH gradients for the origin of LUCA and life (2023) · cites this paper as Blaser et al., 2013
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Poehlein, A., Schmidt, S., Kaster, A.-K., Goenrich, M., Vollmers, J., Thürmer, A., Bertsch, J., Schuchmann, K., Voigt, B., Hecker, M., et al. (2012) · PLoS ONE · doi:10.1371/journal.pone.0033439 · Cited by 274 · see citing works
Lever, M. A., Heuer, V. B., Morono, Y., Masui, N., Schmidt, F., Alperin, M. J., Inagaki, F., Hinrichs, K.-U., & Teske, A. (2010) · Geomicrobiology Journal · doi:10.1080/01490450903456681 · Cited by 86 · see citing works
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Schwander, L., Brabender, M., Mrnjavac, N., Wimmer, J. L. E., Preiner, M., & Martin, W. F. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1257597 · Cited by 65 · see citing works
“10.3389/fmicb.2023.1257597 Frontiers in Microbiology 07 frontiersin.org of 12 C in the acetyl-CoA pathway (Blaser et al., 2013) of methyl synthesis from H 2 and CO 2 underpinning methanogenesis.”
BackgroundInfluentialEnvironmental control on microbial diversification and methane production in the Mesoarchean
Stüeken, E. E., & Buick, R. (2018) · Precambrian Research · doi:10.1016/j.precamres.2017.11.003 · Cited by 47 · see citing works
Flannery, D. T., Allwood, A. C., & Van Kranendonk, M. J. (2016) · Precambrian Research · doi:10.1016/j.precamres.2016.09.021 · Cited by 34 · see citing works
Evidence for corrin biosynthesis in the last universal common ancestor
Modjewski, L. D., Karavaeva, V., Mrnjavac, N., Knopp, M., Martin, W. F., & Sousa, F. L. (2025) · The FEBS Journal · doi:10.1111/febs.17367 · Cited by 15 · see citing works
- Authors
- Blaser, M. B., Dreisbach, L. K., & Conrad, R.
- Affiliations
- Max Planck Institute for Terrestrial Microbiology (DE)
- Venue
- Applied and Environmental Microbiology
- Publisher
- American Society for Microbiology
- Published
- 2013-03-15
- Volume
- 79
- Issue
- 6
- Pages
- 1787-1794
- ISSN
- 0099-2240 (ISSN-L)
- 1098-5336
- PMC
- PMC3592252
- OpenAlex
- W2170577267
- Cited by
- 56
- References
- 2
- Citations by year
- 2026: 1 · 2025: 1 · 2024: 8 · 2023: 4 · 2022: 3 · 2021: 2 · 2020: 5 · 2019: 7 · 2018: 5 · 2017: 5 · 2016: 4 · 2015: 6 · 2014: 3 · 2013: 2
- FWCI
- 3.12
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Applied and Environmental Microbiology (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- U.S. Geological Survey
- Topics
- Physical Sciences › Environmental Science › Ecology › Isotope Analysis in Ecology
- Physical Sciences › Engineering › Building and Construction › Anaerobic Digestion and Biogas Production
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial metabolism and enzyme function
- Keywords
- carbon isotope fractionation, acetogenic bacteria, acetyl-CoA pathway, acetate production, chemolithotrophy, isotope fractionation factors, Thermoanaerobacter kivui, Acetobacterium woodii, autotrophic growth
- MeSH terms
- Acetates, Carbon Dioxide, Carbon Isotopes, Gram-Positive Bacteria, Hydrogen
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