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Rapid Method for Coextraction of DNA and RNA from Natural Environments for Analysis of Ribosomal DNA- and rRNA-Based Microbial Community Composition
Open accessAbstract
A rapid protocol for the extraction of total nucleic acids from environmental samples is described. The method facilitates concomitant assessment of microbial 16S rRNA diversity by PCR and reverse transcription-PCR amplification from a single extraction. Denaturing gradient gel electrophoresis microbial community analysis differentiated the active component (rRNA derived) from the total bacterial diversity (ribosomal DNA derived) down the horizons of an established grassland soil.
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Cited by
Archaea predominate among ammonia-oxidizing prokaryotes in soils
Leininger, S., Urich, T., Schloter, M., Schwark, L., Qi, J., Nicol, G. W., Prosser, J. I., Schuster, S. C., & Schleper, C. (2006) · Nature · doi:10.1038/nature04983 · Cited by 2,497
Tourna, M., Freitag, T. E., Nicol, G. W., & Prosser, J. I. (2008) · Environmental Microbiology · doi:10.1111/j.1462-2920.2007.01563.x · Cited by 773
Anderson, C. R., Condron, L. M., Clough, T. J., Fiers, M., Stewart, A., Hill, R. A., & Sherlock, R. R. (2011) · Pedobiologia · doi:10.1016/j.pedobi.2011.07.005 · Cited by 768
Dempster, D. N., Gleeson, D. B., Solaiman, Z. M., Jones, D. L., & Murphy, D. V. (2012) · Plant and Soil · doi:10.1007/s11104-011-1067-5 · Cited by 509
Angelberger, S., Reinisch, W., Makristathis, A., Lichtenberger, C., Dejaco, C., Papay, P., Novacek, G., Trauner, M., Loy, A., & Berry, D. (2013) · American Journal of Gastroenterology · doi:10.1038/ajg.2013.257 · Cited by 330
Metadata
- Authors
- Griffiths, R. I., Whiteley, A. S., O'Donnell, A. G., & Bailey, M. J.
- Venue
- Applied and Environmental Microbiology
- Publisher
- American Society for Microbiology
- Published
- 2000-12
- Volume
- 66
- Issue
- 12
- Pages
- 5488-5491
- ISSN
- 0099-2240 (ISSN-L)
- 1098-5336
- OpenAlex
- W2123088611
- Cited by
- 1,676
- References
- 0
- FWCI
- 16.49
- Type
- journal article
- Language
- en
- Open access
- green
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- The paper
- Griffiths, R. I., Whiteley, A. S., O'Donnell, A. G., & Bailey, M. J. (2000). Rapid Method for Coextraction of DNA and RNA from Natural Environments for Analysis of Ribosomal DNA- and rRNA-Based Microbial Community Composition. Applied and Environmental Microbiology. https://doi.org/10.1128/aem.66.12.5488-5491.2000
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.