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Oligonucleotide Microarray for 16S rRNA Gene-Based Detection of All Recognized Lineages of Sulfate-Reducing Prokaryotes in the Environment
Open accessAbstract
For cultivation-independent detection of sulfate-reducing prokaryotes (SRPs) an oligonucleotide microarray consisting of 132 16S rRNA gene-targeted oligonucleotide probes (18-mers) having hierarchical and parallel (identical) specificity for the detection of all known lineages of sulfate-reducing prokaryotes (SRP-PhyloChip) was designed and subsequently evaluated with 41 suitable pure cultures of SRPs. The applicability of SRP-PhyloChip for diversity screening of SRPs in environmental and clinical samples was tested by using samples from periodontal tooth pockets and from the chemocline of a hypersaline cyanobacterial mat from Solar Lake (Sinai, Egypt). Consistent with previous studies, SRP-PhyloChip indicated the occurrence of Desulfomicrobium spp. in the tooth pockets and the presence of Desulfonema - and Desulfomonile -like SRPs (together with other SRPs) in the chemocline of the mat. The SRP-PhyloChip results were confirmed by several DNA microarray-independent techniques, including specific PCR amplification, cloning, and sequencing of SRP 16S rRNA genes and the genes encoding the dissimilatory (bi)sulfite reductase ( dsrAB ).
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Cited by
DeSantis, T. Z., Brodie, E. L., Moberg, J. P., Zubieta, I. X., Piceno, Y. M., & Andersen, G. L. (2007) · Microbial Ecology · doi:10.1007/s00248-006-9134-9 · Cited by 508
Rajilić‐Stojanović, M., Heilig, H. G. H. J., Molenaar, D., Kajander, K., Surakka, A., Smidt, H., & De Vos, W. M. (2009) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.01900.x · Cited by 484
Zhou, J., He, Z., Yang, Y., Deng, Y., Tringe, S. G., & Alvarez-Cohen, L. (2015) · mBio · doi:10.1128/mbio.02288-14 · Cited by 474
Wu, L., Liu, X., Schadt, C. W., & Zhou, J. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.02738-05 · Cited by 293
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Carney, L. T., & Lane, T. W. (2014) · Frontiers in Microbiology · doi:10.3389/fmicb.2014.00278 · Cited by 209
Metadata
- Authors
- Loy, A., Lehner, A., Lee, N., Adamczyk, J., Meier, H., Ernst, J., Schleifer, K.-H., & Wagner, M.
- Venue
- Applied and Environmental Microbiology
- Publisher
- American Society for Microbiology
- Published
- 2002-10
- Volume
- 68
- Issue
- 10
- Pages
- 5064-5081
- ISSN
- 0099-2240 (ISSN-L)
- 1098-5336
- OpenAlex
- W2135526183
- Cited by
- 674
- References
- 0
- FWCI
- 34.09
- Type
- journal article
- Language
- en
- Open access
- green
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- CoChat. (2026). Citation check: Oligonucleotide Microarray for 16S rRNA Gene-Based Detection of All Recognized Lineages of Sulfate-Reducing Prokaryotes in the Environment. https://app.cochat.ai/papers/10.1128/aem.68.10.5064-5081.2002
- The paper
- Loy, A., Lehner, A., Lee, N., Adamczyk, J., Meier, H., Ernst, J., Schleifer, K.-H., & Wagner, M. (2002). Oligonucleotide Microarray for 16S rRNA Gene-Based Detection of All Recognized Lineages of Sulfate-Reducing Prokaryotes in the Environment. Applied and Environmental Microbiology. https://doi.org/10.1128/aem.68.10.5064-5081.2002
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