The DOI matches its Crossref record; 58 of the 59 references it cites were found in a registry or an index.
Analysis of Human Immunodeficiency Virus Type 1 Matrix Binding to Membranes and Nucleic Acids
Open accessAbstract
The human immunodeficiency virus type 1 (HIV-1) matrix (MA) protein targets HIV-1 precursor Gag (PrGag) proteins to assembly sites at plasma membrane (PM) sites that are enriched in cholesterol and phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P 2 ]. MA is myristoylated, which enhances membrane binding, and specifically binds PI(4,5)P 2 through headgroup and 2′ acyl chain contacts. MA also binds nucleic acids, although the significance of this association with regard to the viral life cycle is unclear. We have devised a novel MA binding assay and used it to examine MA interactions with membranes and nucleic acids. Our results indicate that cholesterol increases the selectivity of MA for PI(4,5)P 2 -containing membranes, that PI(4,5)P 2 binding tolerates 2′ acyl chain variation, and that the MA myristate enhances membrane binding efficiency but not selectivity. We also observed that soluble PI(4,5)P 2 analogues do not compete effectively with PI(4,5)P 2 -containing liposomes for MA binding but surprisingly do increase nonspecific binding to liposomes. Finally, we have demonstrated that PI(4,5)P 2 -containing liposomes successfully outcompete nucleic acids for MA binding, whereas other liposomes do not. These results support a model in which RNA binding protects MA from associating with inappropriate cellular membranes prior to PrGag delivery to PM assembly sites.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“and that PI(4,5)P 2 outcompetes RNA for MA interaction (80).”
From Role of host tRNAs and aminoacyl-tRNA synthetases in retroviral replication (2019) · cites this paper as [80]
Citations
Cites
The Hydrophobic Effect: Formation of Micelles and Biological Membranes
Tanford, C. (1991) · Medical Entomology and Zoology · Cited by 3,327
Cholesterol interactions with phospholipids in membranes
Ohvo-Rekilä, H. (2002) · Progress in Lipid Research · doi:10.1016/s0163-7827(01)00020-0 · Cited by 1,003
Nguyen, D., & Hildreth, J. E. K. (2000) · Journal of Virology · doi:10.1128/jvi.74.7.3264-3272.2000 · Cited by 788
The HIV lipidome: A raft with an unusual composition
Brügger, B., Glass, B., Haberkant, P., Leibrecht, I., Wieland, F., & Kräusslich, H. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0511136103 · Cited by 730
Plasma membrane rafts play a critical role in HIV-1 assembly and release
Ono, A., & Freed, E. O. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.241320298 · Cited by 700
Myristoylation-dependent replication and assembly of human immunodeficiency virus 1.
Bryant, M. L., & Ratner, L. (1990) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.87.2.523 · Cited by 624
Phosphatidylinositol (4,5) bisphosphate regulates HIV-1 Gag targeting to the plasma membrane
Ono, A., Ablan, S. D., Lockett, S. J., Nagashima, K., & Freed, E. O. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0405596101 · Cited by 553
Structural basis for targeting HIV-1 Gag proteins to the plasma membrane for virus assembly
Saad, J. S., Miller, J., Tai, J., Kim, A., Ghanam, R. H., & Summers, M. F. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0602818103 · Cited by 545
Zhou, W., Parent, L. J., Wills, J. W., & Resh, M. D. (1994) · Journal of Virology · doi:10.1128/jvi.68.4.2556-2569.1994 · Cited by 529
Synthesis, Assembly, and Processing of Viral Proteins
Swanstrom, R. I., & Wills, J. (1997) · Europe PMC (PubMed Central) · Cited by 518
Hill, C. P., Worthylake, D., Bancroft, D. P., Christensen, A. M., & Sundquist, W. I. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.7.3099 · Cited by 473
Aloia, R. C., Tian, H., & Jensen, F. C. (1993) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.90.11.5181 · Cited by 451
Freed, E., & Martin, M. (1996) · Journal of Virology · doi:10.1128/jvi.70.1.341-351.1996 · Cited by 382
Plasma Membrane Is the Site of Productive HIV-1 Particle Assembly
Jouvenet, N., Neil, S. J. D., Bess, C., Johnson, M. C., Virgen, C. A., Simon, S. M., & Bieniasz, P. D. (2006) · PLoS Biology · doi:10.1371/journal.pbio.0040435 · Cited by 358
Freed, E., & Martin, M. (1995) · Journal of Virology · doi:10.1128/jvi.69.3.1984-1989.1995 · Cited by 344
Entropic switch regulates myristate exposure in the HIV-1 matrix protein
Tang, C., Loeliger, E., Luncsford, P. J., Kinde, I., Beckett, D., & Summers, M. F. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0305665101 · Cited by 320
Yu, X., Yuan, X., Matsuda, Z., Lee, T. H., & Essex, M. (1992) · Journal of Virology · doi:10.1128/jvi.66.8.4966-4971.1992 · Cited by 319
Dorfman, T., Mammano, F., Haseltine, W. A., & Göttlinger, H. G. (1994) · Journal of Virology · doi:10.1128/jvi.68.3.1689-1696.1994 · Cited by 288
Chan, R., Uchil, P. D., Jin, J., Shui, G., Ott, D. E., Mothes, W., & Wenk, M. R. (2008) · Journal of Virology · doi:10.1128/jvi.00981-08 · Cited by 282
Chukkapalli, V., Hogue, I. B., Boyko, V., Hu, W.-S., & Ono, A. (2008) · Journal of Virology · doi:10.1128/jvi.01614-07 · Cited by 268
Spearman, P. W., Wang, J. J., Heyden, N. V., & Ratner, L. (1994) · Journal of Virology · doi:10.1128/jvi.68.5.3232-3242.1994 · Cited by 245
Lindwasser, O. W., & Resh, M. D. (2001) · Journal of Virology · doi:10.1128/jvi.75.17.7913-7924.2001 · Cited by 244
Yuan, X., Yu, X., Lee, T. H., & Essex, M. (1993) · Journal of Virology · doi:10.1128/jvi.67.11.6387-6394.1993 · Cited by 240
Role of the Gag Matrix Domain in Targeting Human Immunodeficiency Virus Type 1 Assembly
Ono, A., Orenstein, J. M., & Freed, E. O. (2000) · Journal of Virology · doi:10.1128/jvi.74.6.2855-2866.2000 · Cited by 239
Binding of Human Immunodeficiency Virus Type 1 Gag to Membrane: Role of the Matrix Amino Terminus
Ono, A., & Freed, E. O. (1999) · Journal of Virology · doi:10.1128/jvi.73.5.4136-4144.1999 · Cited by 238
Differential membrane binding of the human immunodeficiency virus type 1 matrix protein
Zhou, W., & Resh, M. D. (1996) · Journal of Virology · doi:10.1128/jvi.70.12.8540-8548.1996 · Cited by 226
Graham, D. R. M., Chertova, E. N., Hilburn, J. M., Arthur, L. O., & Hildreth, J. E. K. (2003) · Journal of Virology · doi:10.1128/jvi.77.15.8237-8248.2003 · Cited by 205
Spearman, P. W., Horton, R., Ratner, L., & Kuli-zade, I. (1997) · Journal of Virology · doi:10.1128/jvi.71.9.6582-6592.1997 · Cited by 204
Assembly, processing, and infectivity of human immunodeficiency virus type 1 gag mutants
Wang, C. T., & Barklis, E. (1993) · Journal of Virology · doi:10.1128/jvi.67.7.4264-4273.1993 · Cited by 184
Self-citationWyma, D. J., Kotov, A., & Aiken, C. (2000) · Journal of Virology · doi:10.1128/jvi.74.20.9381-9387.2000 · Cited by 182
Mammano, F., Kondo, E., Sodroski, J., Bukovský, A., & Göttlinger, H. G. (1995) · Journal of Virology · doi:10.1128/jvi.69.6.3824-3830.1995 · Cited by 157
Paillart, J., & Göttlinger, H. G. (1999) · Journal of Virology · doi:10.1128/jvi.73.4.2604-2612.1999 · Cited by 151
Conformation of the HIV-1 Gag Protein in Solution
Datta, S. A. K., Curtis, J. E., Ratcliff, W., Clark, P. K., Crist, R. M., Lebowitz, J., Krueger, S., & Rein, A. (2007) · Journal of Molecular Biology · doi:10.1016/j.jmb.2006.10.073 · Cited by 145
Holm, K., Weclewicz, K., Hewson, R., & Suomalainen, M. (2003) · Journal of Virology · doi:10.1128/jvi.77.8.4805-4817.2003 · Cited by 141
Interactions between HIV-1 Gag Molecules in Solution: An Inositol Phosphate-mediated Switch
Datta, S. A. K., Zhao, Z., Clark, P. K., Tarasov, S. G., Alexandratos, J. N., Campbell, S. J., Kvaratskhelia, M., Lebowitz, J., & Rein, A. R. (2006) · Journal of Molecular Biology · doi:10.1016/j.jmb.2006.10.072 · Cited by 132
Alfadhli, A., Barklis, R. L., & Barklis, E. (2009) · Virology · doi:10.1016/j.virol.2009.02.048 · Cited by 125
Self-citationPoint Mutations in the HIV-1 Matrix Protein Turn Off the Myristyl Switch
Saad, J. S., Loeliger, E., Luncsford, P. J., Liriano, M., Tai, J., Kim, A., Miller, J. L., Joshi, A., Freed, E. O., & Summers, M. F. (2006) · Journal of Molecular Biology · doi:10.1016/j.jmb.2006.11.068 · Cited by 119
Dalton, A. K., Ako-Adjei, D., Murray, P. S., Murray, D., & Vogt, V. M. (2007) · Journal of Virology · doi:10.1128/jvi.02757-06 · Cited by 118
Ono, A., Waheed, A. A., & Freed, E. O. (2006) · Virology · doi:10.1016/j.virol.2006.10.011 · Cited by 106
Conditional infectivity of a human immunodeficiency virus matrix domain deletion mutant
Wang, C. T., Zhang, Y., McDermott, J., & Barklis, E. (1993) · Journal of Virology · doi:10.1128/jvi.67.12.7067-7076.1993 · Cited by 105
Self-citationA myristoyl switch regulates membrane binding of HIV-1 Gag
Resh, M. D. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0308043101 · Cited by 103
Murray, P. S., Li, Z., Wang, J., Tang, C. L., Honig, B. H., & Murray, D. (2005) · Structure · doi:10.1016/j.str.2005.07.010 · Cited by 98
Ott, D. E., Coren, L. V., & Gagliardi, T. D. (2005) · Journal of Virology · doi:10.1128/jvi.79.22.13839-13847.2005 · Cited by 98
Hermida-Matsumoto, L., & Resh, M. D. (1999) · Journal of Virology · doi:10.1128/jvi.73.3.1902-1908.1999 · Cited by 95
Morikawa, Y., HOCKLEY, D. J., Nermut, M. V., & Jones, I. M. (2000) · Journal of Virology · doi:10.1128/jvi.74.1.16-23.2000 · Cited by 80
Morikawa, Y., Zhang, W., HOCKLEY, D. J., Nermut, M. V., & Jones, I. M. (1998) · Journal of Virology · doi:10.1128/jvi.72.9.7659-7663.1998 · Cited by 75
Jewell, N. A., & Mansky, L. M. (2000) · Journal of General Virology · doi:10.1099/0022-1317-81-8-1889 · Cited by 72
Davis, M., Jiang, J., Zhou, J.-J., Freed, E., & Aiken, C. (2006) · Journal of Virology · doi:10.1128/jvi.80.5.2405-2417.2006 · Cited by 71
Biochemical Characterization of Rous Sarcoma Virus MA Protein Interaction with Membranes
Dalton, A. K., Murray, P. S., Murray, D., & Vogt, V. M. (2005) · Journal of Virology · doi:10.1128/jvi.79.10.6227-6238.2005 · Cited by 65
Partitioning of HIV-1 Gag and Gag-Related Proteins to Membranes
Ehrlich, L. S., Fong, S., Scarlata, S., Zybarth, G., & Carter, C. (1996) · Biochemistry · doi:10.1021/bi952337x · Cited by 62
Role of Myristylation in HIV-1 Gag Assembly
Bouamr, F., Scarlata, S., & Carter, C. (2003) · Biochemistry · doi:10.1021/bi020692z · Cited by 57
Characterization of the In Vitro HIV-1 Capsid Assembly Pathway
Barklis, E., Alfadhli, A., McQuaw, C. M., Yalamuri, S. M., Still, A., Barklis, R. L., Kukull, B., & López, C. S. (2009) · Journal of Molecular Biology · doi:10.1016/j.jmb.2009.01.058 · Cited by 54
Self-citationMembrane-induced alterations in HIV-1 gag and matrix protein-protein interactions
Scarlata, S., Ehrlich, L. S., & Carter, C. A. (1998) · Journal of Molecular Biology · doi:10.1006/jmbi.1997.1615 · Cited by 48
HIV-1 Gag: Flipped out for PI(4,5)P 2
Freed, E. O. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0604715103 · Cited by 42
Assembly of Retrovirus Capsid-Nucleocapsid Proteins in the Presence of Membranes or RNA
Zuber, G., McDermott, J. E., Karanjia, S., Zhao, W.-Y., Schmid, M., & Barklis, E. (2000) · Journal of Virology · doi:10.1128/jvi.74.16.7431-7441.2000 · Cited by 33
Self-citationHigh Affinity Nucleocapsid Protein Binding to the μΨ RNA Packaging Signal of Rous Sarcoma Virus
Zhou, J., McAllen, J. K., Tailor, Y., & Summers, M. F. (2005) · Journal of Molecular Biology · doi:10.1016/j.jmb.2005.04.046 · Cited by 30
Analysis of human immunodeficiency virus matrix domain replacements.
Scholz, I. G., Still, A., Dhenub, T. C., Coday, K., Webb, M., & Barklis, E. (2008) · Virology · doi:10.1016/j.virol.2007.10.010 · Cited by 29
Self-citationBhatia, A. K., Campbell, N., Panganiban, A. T., & Ratner, L. (2007) · Virology · doi:10.1016/j.virol.2007.06.046 · Cited by 24
Cited by
Sorted by citations
HIV-1 assembly, release and maturation
Freed, E. O. (2015) · Nature Reviews Microbiology · doi:10.1038/nrmicro3490 · Cited by 654
Structural Determinants and Mechanism of HIV-1 Genome Packaging
Lu, K., Heng, X., & Summers, M. F. (2011) · Journal of Molecular Biology · doi:10.1016/j.jmb.2011.04.029 · Cited by 290
Global changes in the RNA binding specificity of HIV-1 Gag regulate virion genesis
Kutluay, S. B., Zang, T., Blanco-Melo, D., Powell, C., Jannain, D., Errando, M., & Bieniasz, P. D. (2014) · Cell · doi:10.1016/j.cell.2014.09.057 · Cited by 257
Chukkapalli, V., Oh, S. J., & Ono, A. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0908661107 · Cited by 229
HIV Gag polyprotein: processing and early viral particle assembly
Bell, N. M., & Lever, A. M. L. (2013) · Trends in Microbiology · doi:10.1016/j.tim.2012.11.006 · Cited by 222
Metadata
- Authors
- Alfadhli, A., Still, A., & Barklis, E.
- Affiliations
- Oregon Health & Science University (US)
- Corresponding author
- Barklis, Eric
- ORCID
- Barklis, Eric
- Venue
- Journal of Virology
- Publisher
- American Society for Microbiology
- Published
- 2009-12
- Volume
- 83
- Issue
- 23
- Pages
- 12196-12203
- ISSN
- 0022-538X (ISSN-L)
- 1098-5514
- PMC
- PMC2786731
- OpenAlex
- W2122077692
- Cited by
- 145
- References
- 59
- Citations by year
- 2026: 3 · 2025: 2 · 2024: 8 · 2023: 2 · 2022: 4 · 2021: 5 · 2020: 8 · 2019: 10 · 2018: 11 · 2017: 3 · 2016: 17 · 2015: 9 · 2014: 14 · 2013: 10 · 2012: 11
- FWCI
- 4.66
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Journal of Virology (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institute of General Medical Sciences (GM060170, R01GM060170)
- National Institute of Allergy and Infectious Diseases (AI071798, R01AI071798)
- Topics
- Life Sciences › Immunology and Microbiology › Virology › HIV Research and Treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Lipid Membrane Structure and Behavior
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
- Keywords
- HIV-1 matrix protein, membrane binding, phosphatidylinositol 4,5-bisphosphate, cholesterol, myristoylation, nucleic acid binding, RNA binding, viral assembly, Gag protein, liposomes
- MeSH terms
- Cell Membrane, Cholesterol, Humans, Liposomes, Nucleic Acids, Protein Binding, HIV Antigens, HIV-1, Virus Assembly, Phosphatidylinositol 4,5-Diphosphate, gag Gene Products, Human Immunodeficiency Virus
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review