The DOI matches its Crossref record; 275 of the 275 references it cites were found in a registry or an index.
Stochastic Community Assembly: Does It Matter in Microbial Ecology?
Open accessAbstract
SUMMARY: Understanding the mechanisms controlling community diversity, functions, succession, and biogeography is a central, but poorly understood, topic in ecology, particularly in microbial ecology. Although stochastic processes are believed to play nonnegligible roles in shaping community structure, their importance relative to deterministic processes is hotly debated. The importance of ecological stochasticity in shaping microbial community structure is far less appreciated. Some of the main reasons for such heavy debates are the difficulty in defining stochasticity and the diverse methods used for delineating stochasticity. Here, we provide a critical review and synthesis of data from the most recent studies on stochastic community assembly in microbial ecology. We then describe both stochastic and deterministic components embedded in various ecological processes, including selection, dispersal, diversification, and drift. We also describe different approaches for inferring stochasticity from observational diversity patterns and highlight experimental approaches for delineating ecological stochasticity in microbial communities. In addition, we highlight research challenges, gaps, and future directions for microbial community assembly research.
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Cites
Non‐parametric multivariate analyses of changes in community structure
CLARKE, K. R. (1993) · Australian Journal of Ecology · doi:10.1111/j.1442-9993.1993.tb00438.x · Cited by 14,128
A new method for non-parametric multivariate analysis of variance
Anderson, M. J. (2001) · Austral Ecology · doi:10.1111/j.1442-9993.2001.01070.pp.x · Cited by 13,828
The Theory of Island Biogeography
MacArthur, R. H., & Wilson, E. O. (2001) · Princeton University Press eBooks · doi:10.1515/9781400881376 · Cited by 12,632
The Theory of Island Biogeography
Kirkby, M. J., MacArthur, R. H., & Wilson, E. O. (1968) · The Geographical Journal · doi:10.2307/1796430 · Cited by 11,581
Biodiversity loss and its impact on humanity
Cardinale, B. J., Duffy, J. E., Gonzalez, A., Hooper, D. U., Perrings, C., Venail, P., Narwani, A., Mace, G. M., Tilman, D., Wardle, D. A., et al. (2012) · Nature · doi:10.1038/nature11148 · Cited by 7,457 · cited 1×
“functions and services provided by ecosystems (3, 4).”
BackgroundThe Unified Neutral Theory of Biodiversity and Biogeography
Jetschke, G. (2002) · Ecology · doi:10.1890/0012-9658(2002)083[1771:tuntob]2.0.co;2 · Cited by 6,993
Mechanisms of Maintenance of Species Diversity
Chesson, P. (2000) · Annual Review of Ecology and Systematics · doi:10.1146/annurev.ecolsys.31.1.343 · Cited by 6,645
Picante: R tools for integrating phylogenies and ecology
Kembel, S. W., Cowan, P. D., Helmus, M. R., Cornwell, W. K., Morlon, H., Ackerly, D. D., Blomberg, S. P., & Webb, C. O. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq166 · Cited by 6,243
Hutchinson, G. E. (1957) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.1957.022.01.039 · Cited by 6,228
The metacommunity concept: a framework for multi‐scale community ecology
Leibold, M. A., Holyoak, M., Mouquet, N., Amarasekare, P., Chase, J. M., Hoopes, M. F., Holt, R. D., Shurin, J. B., Law, R., Tilman, D., et al. (2004) · Ecology Letters · doi:10.1111/j.1461-0248.2004.00608.x · Cited by 5,391
Cited by
A general framework for quantitatively assessing ecological stochasticity
Ning, D., Deng, Y., Tiedje, J. M., & Zhou, J. (2019) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1904623116 · Cited by 1,255
Self-citationJiao, S., Yang, Y., Xu, Y., Zhang, J., & Lu, Y. (2020) · The ISME Journal · doi:10.1038/s41396-019-0522-9 · Cited by 1,052
Chen, W., Ren, K., Isabwe, A., Chen, H., Liu, M., & Yang, J. (2019) · Microbiome · doi:10.1186/s40168-019-0749-8 · Cited by 804
Wu, S., Du, H., & Xu, Y. (2023) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2022.109995 · Cited by 74
Microplastics affect nitrogen cycling and antibiotic resistance genes transfer of sediment
Zeng, Q., Xiang, J., Yang, C., Wu, J., Li, Y., Sun, Y., Liu, Q., Shi, S., & Gong, Z. (2023) · Chemical Engineering Journal · doi:10.1016/j.cej.2022.140193 · Cited by 73
Yang, X., Yuan, J., Li, N., Franks, A. E., Shentu, J., Luo, Y., Xu, J., & He, Y. (2021) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2021.108210 · Cited by 64
Microbial composition and functional diversity differ across urban green infrastructure types
Gill, A. S., Purnell, K., Palmer, M. I., Stein, J., & McGuire, K. L. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.00912 · Cited by 64
Metadata
- Authors
- Zhou, J., & Ning, D.
- Venue
- Microbiology and Molecular Biology Reviews
- Publisher
- American Society for Microbiology
- Published
- 2017-12
- Volume
- 81
- Issue
- 4
- ISSN
- 1092-2172 (ISSN-L)
- 1098-5557
- OpenAlex
- W2761955173
- Cited by
- 2,773
- References
- 275
- FWCI
- 7.23
- Type
- journal article
- Language
- en
- Open access
- bronze
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