Deconvolution of monocyte responses in inflammatory bowel disease reveals an IL-1 cytokine network that regulates IL-23 in genetic and acquired IL-10 resistance
Open accessAbstract
Objective: Dysregulated immune responses are the cause of IBDs. Studies in mice and humans suggest a central role of interleukin (IL)-23-producing mononuclear phagocytes in disease pathogenesis. Mechanistic insights into the regulation of IL-23 are prerequisite for selective IL-23 targeting therapies as part of personalised medicine. Design: We performed transcriptomic analysis to investigate IL-23 expression in human mononuclear phagocytes and peripheral blood mononuclear cells. We investigated the regulation of IL-23 expression and used single-cell RNA sequencing to derive a transcriptomic signature of hyperinflammatory monocytes. Using gene network correlation analysis, we deconvolved this signature into components associated with homeostasis and inflammation in patient biopsy samples. Results: We characterised monocyte subsets of healthy individuals and patients with IBD that express IL-23. We identified autosensing and paracrine sensing of IL-1α/IL-1β and IL-10 as key cytokines that control IL-23-producing monocytes. Whereas Mendelian genetic defects in IL-10 receptor signalling induced IL-23 secretion after lipopolysaccharide stimulation, whole bacteria exposure induced IL-23 production in controls via acquired IL-10 signalling resistance. We found a transcriptional signature of IL-23-producing inflammatory monocytes that predicted both disease and resistance to antitumour necrosis factor (TNF) therapy and differentiated that from an IL-23-associated lymphocyte differentiation signature that was present in homeostasis and in disease. Conclusion: Our work identifies IL-10 and IL-1 as critical regulators of monocyte IL-23 production. We differentiate homeostatic IL-23 production from hyperinflammation-associated IL-23 production in patients with severe ulcerating active Crohn’s disease and anti-TNF treatment non-responsiveness. Altogether, we identify subgroups of patients with IBD that might benefit from IL-23p19 and/or IL-1α/IL-1β-targeting therapies upstream of IL-23.
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These findings align with previous studies linking monocytes to the pathogenesis of IBD.
“These findings align with previous studies linking monocytes to the pathogenesis of IBD64,65.”
From Inferring gene regulatory networks from single-cell multiome data using atlas-scale external data (2025) · cites this paper as [65]
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Inferring gene regulatory networks from single-cell multiome data using atlas-scale external data
Yuan, Q., & Duren, Z. (2025) · Nature Biotechnology · doi:10.1038/s41587-024-02182-7 · Cited by 118 · see citing works
“These findings align with previous studies linking monocytes to the pathogenesis of IBD 64,65 .”
- Authors
- Aschenbrenner, D., Quaranta, M., Banerjee, S., Ilott, N., Jansen, J., Steere, B., Chen, Y.-H., Ho, S., Cox, K., Arancibia-Cárcamo, C. V., Coles, M., Gaffney, E., Travis, S. P., Denson, L., Kugathasan, S., Schmitz, J., Powrie, F., Sansom, S. N., & Uhlig, H. H.
- Affiliations
- John Radcliffe Hospital (GB)
- University of Cambridge (GB)
- University of Oxford (GB)
- Eli Lilly (United States) (US)
- Cincinnati Children's Hospital Medical Center (US)
- Emory University (US)
- Corresponding author
- Uhlig, Holm H
- ORCID
- Venue
- Gut
- Publisher
- BMJ
- Published
- 2020-10-09
- Volume
- 70
- Issue
- 6
- Pages
- 1023-1036
- ISSN
- 0017-5749 (ISSN-L)
- 1468-3288
- PMC
- PMC8108288
- OpenAlex
- W3092258992
- Cited by
- 123
- References
- 8
- Citations by year
- 2026: 21 · 2025: 27 · 2024: 24 · 2023: 22 · 2022: 15 · 2021: 14
- FWCI
- 7.48
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- Gut (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Apollo (University of Cambridge) (submittedVersion, cc-by)
- Apollo (University of Cambridge) (submittedVersion)
- Apollo (cc-by)
- Apollo
- Funders
- Eli Lilly and Company (HBRYHG00)
- Wellcome Trust (212240/Z/18/Z)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Inflammatory Bowel Disease
- Life Sciences › Immunology and Microbiology › Immunology › Psoriasis: Treatment and Pathogenesis
- Life Sciences › Immunology and Microbiology › Immunology › IL-33, ST2, and ILC Pathways
- Keywords
- inflammatory bowel disease, Crohn's disease, IL-23, monocytes, IL-23p19, single-cell transcriptomics, lipopolysaccharide, personalized medicine
- MeSH terms
- Adolescent, Adult, Aged, Aged, 80 and over, Cells, Cultured, Drug Resistance, Female, Gene Expression Regulation, Homeostasis, Humans, Lipopolysaccharides, Male, Middle Aged, Monocytes, Tumor Necrosis Factor-alpha, Inflammatory Bowel Diseases, Signal Transduction, Gene Expression, Interleukin-10, Autocrine Communication, Paracrine Communication, Gene Regulatory Networks, Interleukin-1alpha, Interleukin-1beta, Receptors, Interleukin-10, Interleukin-23 Subunit p19, Young Adult, Transcriptome
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