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‘More than the sum of its parts: microbiome biodiversity as a driver of plant growth and soil health’.
Open accessAbstract
Microorganisms drive several processes needed for robust plant growth and health. Harnessing microbial functions is thus key to productive and sustainable food production. Molecular methods have led to a greater understanding of the soil microbiome composition. However, translating species or gene composition into microbiome functionality remains a challenge. Community ecology concepts such as the biodiversity–ecosystem functioning framework may help predict the assembly and function of plant-associated soil microbiomes. Higher diversity can increase the number and resilience of plant-beneficial functions that can be coexpressed and unlock the expression of plant-beneficial traits that are hard to obtain from any species in isolation. We combine well-established community ecology concepts with molecular microbiology into a workable framework that may enable us to predict and enhance soil microbiome functionality to promote robust plant growth in a global change context.
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“In comparison, several crops need parts of their own microbiome for optimal growth and contain a risk of catching molds, when grown in spacecraft simulations (Saleem et al., 2019; Fahrion et al., 2020).”
From Use of Photobioreactors in Regenerative Life Support Systems for Human Space Exploration (2021) · cites this paper as Saleem et al., 2019
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Cites
The rhizosphere microbiome and plant health
Berendsen, R. L., Pieterse, C. M. J., & Bakker, P. A. H. M. (2012) · Trends in Plant Science · doi:10.1016/j.tplants.2012.04.001 · Cited by 5,347
Soil structure and management: a review
Bronick, C. J., & Lal, R. (2005) · Geoderma · doi:10.1016/j.geoderma.2004.03.005 · Cited by 4,463
Microbial interactions: from networks to models
Faust, K., & Raes, J. (2012) · Nature Reviews Microbiology · doi:10.1038/nrmicro2832 · Cited by 4,268
Plant-Growth-Promoting Rhizobacteria
Lugtenberg, B. J. J., & Kamilova, F. D. (2009) · Annual Review of Microbiology · doi:10.1146/annurev.micro.62.081307.162918 · Cited by 4,182
Going back to the roots: the microbial ecology of the rhizosphere
Philippot, L., Raaijmakers, J. M., Lemanceau, P., & van der Putten, W. H. (2013) · Nature Reviews Microbiology · doi:10.1038/nrmicro3109 · Cited by 4,085
Embracing the unknown: disentangling the complexities of the soil microbiome
Fierer, N. (2017) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2017.87 · Cited by 3,579
Biodiversity and ecosystem productivity in a fluctuating environment: The insurance hypothesis
Yachi, S., & Loreau, M. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.4.1463 · Cited by 3,211
Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria
Mendes, R., Kruijt, M., de Bruijn, I., Dekkers, E., van der Voort, M., Schneider, J. H. M., Piceno, Y. M., DeSantis, T. Z., Andersen, G. L., Bakker, P. A. H. M., et al. (2011) · Science · doi:10.1126/science.1203980 · Cited by 2,856
The ecology of the microbiome: Networks, competition, and stability
Coyte, K. Z., Schlüter, J., & Foster, K. R. (2015) · Science · doi:10.1126/science.aad2602 · Cited by 2,812
Bacterial competition: surviving and thriving in the microbial jungle
Hibbing, M. E., Fuqua, C., Parsek, M. R., & Peterson, S. B. (2009) · Nature Reviews Microbiology · doi:10.1038/nrmicro2259 · Cited by 2,765
Microbial diversity drives multifunctionality in terrestrial ecosystems
Delgado-Baquerizo, M., Maestre, F. T., Reich, P. B., Jeffries, T. C., Gaitan, J. J., Encinar, D., Berdugo, M., Campbell, C. D., & Singh, B. K. (2016) · Nature Communications · doi:10.1038/ncomms10541 · Cited by 2,624
Soil biodiversity and soil community composition determine ecosystem multifunctionality
Wagg, C., Bender, S. F., Widmer, F., & van der Heijden, M. G. A. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1320054111 · Cited by 2,550
Rhizosphere microbiome assemblage is affected by plant development
Chaparro, J. M., Badri, D. V., & Vivanco, J. M. (2013) · The ISME Journal · doi:10.1038/ismej.2013.196 · Cited by 1,623
Distinct soil microbial diversity under long-term organic and conventional farming
Hartmann, M., Frey, B., Mayer, J., Mäder, P., & Widmer, F. (2015) · The ISME Journal · doi:10.1038/ismej.2014.210 · Cited by 1,496
Higher levels of multiple ecosystem services are found in forests with more tree species
Gamfeldt, L., Snäll, T., Bagchi, R., Jonsson, M., Gustafsson, L., Kjellander, P., Ruiz-Jaen, M. C., Fröberg, M., Stendahl, J., Philipson, C. D., et al. (2013) · Nature Communications · doi:10.1038/ncomms2328 · Cited by 1,477
Biodiversity and ecosystem multifunctionality
Hector, A., & Bagchi, R. (2007) · Nature · doi:10.1038/nature05947 · Cited by 1,412
Where less may be more: how the rare biosphere pulls ecosystems strings
Jousset, A., Bienhold, C., Chatzinotas, A., Gallien, L., Gobet, A., Kurm, V., Küsel, K., Rillig, M. C., Rivett, D. W., Salles, J. F., et al. (2017) · The ISME Journal · doi:10.1038/ismej.2016.174 · Cited by 1,394
Self-citationBender, S. F., Wagg, C., & van der Heijden, M. G. A. (2016) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2016.02.016 · Cited by 1,355
Microbial co-operation in the rhizosphere
Barea, J. M., Pozo, M. J., Azcón, R., & Azcón‐Aguilar, C. (2005) · Journal of Experimental Botany · doi:10.1093/jxb/eri197 · Cited by 1,158
Disease-induced assemblage of a plant-beneficial bacterial consortium
Berendsen, R. L., Vismans, G., Yu, K., Song, Y., de Jonge, R., Burgman, W. P., Burmølle, M., Herschend, J., Bakker, P. A. H. M., & Pieterse, C. M. J. (2018) · The ISME Journal · doi:10.1038/s41396-018-0093-1 · Cited by 1,101
Microbial diversity determines the invasion of soil by a bacterial pathogen
van Elsas, J. D., Chiurazzi, M., Mallon, C. A., Elhottová, D., Krištůfek, V., & Salles, J. F. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1109326109 · Cited by 1,055
Initial community evenness favours functionality under selective stress
Wittebolle, L., Marzorati, M., Clement, L., Balloi, A., Daffonchio, D. G., Heylen, K., Vos, P. D., Verstraete, W., & Boon, N. (2009) · Nature · doi:10.1038/nature07840 · Cited by 979
The contribution of species richness and composition to bacterial services
Bell, T., Newman, J. A., Silverman, B. W., Turner, S. L., & Lilley, A. K. (2005) · Nature · doi:10.1038/nature03891 · Cited by 950
Impacts of Biodiversity Loss Escalate Through Time as Redundancy Fades
Reich, P. B., Tilman, D., Isbell, F., Mueller, K., Hobbie, S. E., Flynn, D. F. B., & Eisenhauer, N. (2012) · Science · doi:10.1126/science.1217909 · Cited by 897
McDaniel, M. D., Tiemann, L. K., & Grandy, A. S. (2014) · Ecological Applications · doi:10.1890/13-0616.1 · Cited by 846
Loss in microbial diversity affects nitrogen cycling in soil
Philippot, L., Spor, A., Hénault, C., Bru, D., Bizouard, F., Jones, C. M., Sarr, A., & Maron, P. (2013) · The ISME Journal · doi:10.1038/ismej.2013.34 · Cited by 832
Crop rotational diversity enhances belowground communities and functions in an agroecosystem
Tiemann, L. K., Grandy, A. S., Atkinson, E. E., Marín-Spiotta, E., & McDaniel, M. D. (2015) · Ecology Letters · doi:10.1111/ele.12453 · Cited by 828
Organic farming enhances soil microbial abundance and activity—A meta-analysis and meta-regression
Lori, M., Symanczik, S., Mader, P. M., Deyn, G. B. D., & Gattinger, A. (2017) · PLoS ONE · doi:10.1371/journal.pone.0180442 · Cited by 691
Self-generated diversity produces “insurance effects” in biofilm communities
Boles, B. R., Thoendel, M., & Singh, P. K. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0407460101 · Cited by 686
Saleem, M., Arshad, M., Hussain, S., & Bhatti, A. S. (2007) · Journal of Industrial Microbiology & Biotechnology · doi:10.1007/s10295-007-0240-6 · Cited by 653
Self-citationRolli, E., Marasco, R., Vigani, G., Ettoumi, B., Mapelli, F., Deangelis, M. L., Gandolfi, C., Casati, E., Previtali, F., Gerbino, R., et al. (2014) · Environmental Microbiology · doi:10.1111/1462-2920.12439 · Cited by 652
Disease Suppressive Soils: New Insights from the Soil Microbiome
Schlatter, D., Kinkel, L. L., Thomashow, L. S., Weller, D. M., & Paulitz, T. C. (2017) · Phytopathology · doi:10.1094/phyto-03-17-0111-rvw · Cited by 646
Wei, Z., Yang, T., Friman, V., Xu, Y., Shen, Q., & Jousset, A. (2015) · Nature Communications · doi:10.1038/ncomms9413 · Cited by 601
Self-citationThe portfolio concept in ecology and evolution
Schindler, D. E., Armstrong, J. B., & Reed, T. E. (2015) · Frontiers in Ecology and the Environment · doi:10.1890/140275 · Cited by 597
Biodiversity in a complex world: consolidation and progress in functional biodiversity research
Hillebrand, H., & Matthiessen, B. (2009) · Ecology Letters · doi:10.1111/j.1461-0248.2009.01388.x · Cited by 591
Competitive and cooperative metabolic interactions in bacterial communities
Freilich, S., Zarecki, R., Eilam, O., Segal, E. S., Henry, C. S., Kupiec, M., Gophna, U., Sharan, R., & Ruppin, E. (2011) · Nature Communications · doi:10.1038/ncomms1597 · Cited by 557
Sustaining multiple ecosystem functions in grassland communities requires higher biodiversity
Zavaleta, E. S., Pasari, J. R., Hulvey, K. B., & Tilman, G. D. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0906829107 · Cited by 538
Weisser, W. W., Roscher, C., Meyer, S. T., Ebeling, A., Luo, G., Allan, E., Beßler, H., Barnard, R. L., Buchmann, N., Buscot, F., et al. (2017) · Basic and Applied Ecology · doi:10.1016/j.baae.2017.06.002 · Cited by 517
Dary, M., Chamber-Perez, M., Palomares, A. J., et al. (2009) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2009.12.035 · Cited by 488
Species Interactions Alter Evolutionary Responses to a Novel Environment
Lawrence, D., Fiegna, F., Behrends, V., Bundy, J. G., Phillimore, A. B., Bell, T., & Barraclough, T. G. (2012) · PLoS Biology · doi:10.1371/journal.pbio.1001330 · Cited by 486
Spatial complementarity in tree crowns explains overyielding in species mixtures
Williams, L., Paquette, A., Cavender-Bares, J. M., Messier, C., & Reich, P. B. (2017) · Nature Ecology & Evolution · doi:10.1038/s41559-016-0063 · Cited by 476
Plant root and mycorrhizal fungal traits for understanding soil aggregation
Rillig, M. C., Aguilar‐Trigueros, C. A., Bergmann, J., Verbruggen, E., Veresoglou, S. D., & Lehmann, A. (2014) · New Phytologist · doi:10.1111/nph.13045 · Cited by 435
Chapter 5 Impact of Pesticides on Soil Microbial Diversity, Enzymes, and Biochemical Reactions
Hussain, S., Siddique, T., Saleem, M., Arshad, M., & Khalid, A. (2009) · Advances in agronomy · doi:10.1016/s0065-2113(09)01005-0 · Cited by 423
Self-citationProbiotic Diversity Enhances Rhizosphere Microbiome Function and Plant Disease Suppression
Hu, J., Wei, Z., Friman, V., Gu, S., Wang, X., Eisenhauer, N., Yang, T., Ma, J., SHEN, Q.-R., Xu, Y., et al. (2016) · mBio · doi:10.1128/mbio.01790-16 · Cited by 422
Self-citationTrait-based approaches for understanding microbial biodiversity and ecosystem functioning
Krause, S., Roux, X. L., Niklaus, P. A., van Bodegom, P. M., Lennon, J. T., Bertilsson, S., Grossart, H., Philippot, L., & Bodelier, P. L. E. (2014) · Frontiers in Microbiology · doi:10.3389/fmicb.2014.00251 · Cited by 417
Netzker, T., Fischer, J., Weber, J., Mattern, D. J., König, C. C., Valiante, V., Schroeckh, V., & Brakhage, A. A. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00299 · Cited by 413
Ling, N., Zhu, C., Xue, C., Chen, H., Duan, Y., Peng, C., Guo, S., & Shen, Q. (2016) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2016.05.005 · Cited by 412
Fu, L., Penton, C. R., Ruan, Y., Shen, Z., Xue, C., Li, R., & Shen, Q. (2016) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2016.10.008 · Cited by 370
Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System
Lupatini, M., Korthals, G. W., de Hollander, M., et al. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2016.02064 · Cited by 364
Raaijmakers, J., & Mazzola, M. (2016) · Science · doi:10.1126/science.aaf3252 · Cited by 363
Sanctions, Cooperation, and the Stability of Plant-Rhizosphere Mutualisms
Kiers, E. T., & Denison, R. F. (2008) · Annual Review of Ecology Evolution and Systematics · doi:10.1146/annurev.ecolsys.39.110707.173423 · Cited by 345
Ren, D., Madsen, J. S., Sørensen, S. J., & Burmølle, M. (2014) · The ISME Journal · doi:10.1038/ismej.2014.96 · Cited by 334
Wagner, M. R., Lundberg, D. S., Coleman‐Derr, D., Tringe, S. G., Dangl, J. L., & Mitchell‐Olds, T. (2014) · Ecology Letters · doi:10.1111/ele.12276 · Cited by 334
Xiong, W., Guo, S., Jousset, A., Zhao, Q., Wu, H., Li, R., Kowalchuk, G. A., & Shen, Q. (2017) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2017.07.016 · Cited by 331
Self-citationNutrient cross-feeding in the microbial world
Seth, E. C., & Taga, M. E. (2014) · Frontiers in Microbiology · doi:10.3389/fmicb.2014.00350 · Cited by 326
The large-scale organization of the bacterial network of ecological co-occurrence interactions
Freilich, S., Kreimer, A., Meilijson, I., Gophna, U., Sharan, R., & Ruppin, E. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq118 · Cited by 315
Loss of microbial diversity in soils is coincident with reductions in some specialized functions
Singh, B. K., Quince, C., Macdonald, C. A., Khachane, A. N., Thomas, N., Al‐Soud, W. A., Sørensen, S. J., He, Z., White, D., Sinclair, A., et al. (2014) · Environmental Microbiology · doi:10.1111/1462-2920.12353 · Cited by 308
van der Plas, F., Manning, P., Allan, E., Scherer‐Lorenzen, M., Verheyen, K., Wirth, C., Zavala, M. A., Hector, A., Ampoorter, E., Baeten, L., et al. (2016) · Nature Communications · doi:10.1038/ncomms11109 · Cited by 304
Local loss and spatial homogenization of plant diversity reduce ecosystem multifunctionality
Hautier, Y., Isbell, F., Borer, E. T., Seabloom, E. W., Harpole, W. S., Lind, E. M., MacDougall, A. S., Stevens, C. J., Adler, P. B., Alberti, J., et al. (2017) · Nature Ecology & Evolution · doi:10.1038/s41559-017-0395-0 · Cited by 303
Impact of root system architecture on rhizosphere and root microbiome
Saleem, M., Law, A. D., Sahib, M. R., Pervaiz, Z. H., & Zhang, Q. (2018) · Rhizosphere · doi:10.1016/j.rhisph.2018.02.003 · Cited by 302
Self-citationMetabolic division of labor in microbial systems
Tsoi, R., Wu, F., Zhang, C., Bewick, S. A., Karig, D., & You, L. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1716888115 · Cited by 301
Griffiths, B. S., Ritz, K., Wheatley, R., Kuan, H. L., Boag, B., Christensen, S. T., Ekelund, F., Sørensen, S. J., Muller, S., & Bloem, J. (2001) · Soil Biology and Biochemistry · doi:10.1016/s0038-0717(01)00094-3 · Cited by 299
Potential impact of soil microbiomes on the leaf metabolome and on herbivore feeding behavior
Badri, D. V., Zolla, G., Bakker, M. G., Manter, D. K., & Vivanco, J. M. (2013) · New Phytologist · doi:10.1111/nph.12124 · Cited by 258
Steering Soil Microbiomes to Suppress Aboveground Insect Pests
Pineda, A., Kaplan, I., & Bezemer, Т. M. (2017) · Trends in Plant Science · doi:10.1016/j.tplants.2017.07.002 · Cited by 258
Ecological stability in response to warming
Fussmann, K. E., Schwarzmüller, F., Brose, U., Jousset, A., & Rall, B. C. (2014) · Nature Climate Change · doi:10.1038/nclimate2134 · Cited by 249
Self-citationIncreasing antagonistic interactions cause bacterial communities to collapse at high diversity
Becker, J., Eisenhauer, N., Scheu, S., & Jousset, A. (2012) · Ecology Letters · doi:10.1111/j.1461-0248.2012.01759.x · Cited by 248
Self-citationDivision of Labor during Biofilm Matrix Production
Dragoš, A., Kiesewalter, H. T., Martin, M., Hsu, C.-Y., Hartmann, R., Wechsler, T., Eriksen, C., Brix, S., Drescher, K., Stanley‐Wall, N. R., et al. (2018) · Current Biology · doi:10.1016/j.cub.2018.04.046 · Cited by 236
Modelling the effects of loss of soil biodiversity on ecosystem function
Hunt, H. W., & Wall, D. H. (2002) · Global Change Biology · doi:10.1046/j.1365-2486.2002.00425.x · Cited by 224
Experimental niche evolution alters the strength of the diversity–productivity relationship
Gravel, D., Bell, T., Gougat‐Barbera, C., Bouvier, T. C., Pommier, T., Venail, P., & Mouquet, N. (2010) · Nature · doi:10.1038/nature09592 · Cited by 216
Effectiveness of ecological rescue for altered soil microbial communities and functions
Calderón, K., Spor, A., Breuil, M.-C., Bru, D., Bizouard, F., Violle, C., Barnard, R. L., & Philippot, L. (2017) · The ISME Journal · doi:10.1038/ismej.2016.86 · Cited by 205
Reduction of rare soil microbes modifies plant–herbivore interactions
Hol, W. H. G., de Boer, W., Termorshuizen, A. J., Meyer, K., Schneider, J. H. M., van Dam, N. M., van Veen, J. A., & van der Putten, W. H. (2010) · Ecology Letters · doi:10.1111/j.1461-0248.2009.01424.x · Cited by 198
Soil microbiomes vary in their ability to confer drought tolerance to Arabidopsis
Zolla, G., Badri, D. V., Bakker, M. G., Manter, D. K., & Vivanco, J. M. (2013) · Applied Soil Ecology · doi:10.1016/j.apsoil.2013.03.007 · Cited by 187
Jousset, A., Schmid, B., Scheu, S., & Eisenhauer, N. (2011) · Ecology Letters · doi:10.1111/j.1461-0248.2011.01613.x · Cited by 184
Self-citationA macroecological theory of microbial biodiversity
Shoemaker, W. R., Locey, K. J., & Lennon, J. T. (2017) · Nature Ecology & Evolution · doi:10.1038/s41559-017-0107 · Cited by 181
Niche dimensionality links biodiversity and invasibility of microbial communities
Eisenhauer, N., Schulz, W., Scheu, S., & Jousset, A. (2012) · Functional Ecology · doi:10.1111/j.1365-2435.2012.02060.x · Cited by 180
Self-citationEvolution of species interactions determines microbial community productivity in new environments
Fiegna, F., Moreno‐Letelier, A., Bell, T., & Barraclough, T. G. (2014) · The ISME Journal · doi:10.1038/ismej.2014.215 · Cited by 173
Facilitation promotes invasions in plant‐associated microbial communities
Li, M., Wei, Z., Wang, J., Jousset, A., Friman, V., Xu, Y., Shen, Q., & Pommier, T. (2018) · Ecology Letters · doi:10.1111/ele.13177 · Cited by 166
Self-citationPredator richness increases the effect of prey diversity on prey yield
Saleem, M., Fetzer, I., Dormann, C. F., Harms, H., & Chatzinotas, A. (2012) · Nature Communications · doi:10.1038/ncomms2287 · Cited by 154
Self-citationImpact of interspecific interactions on antimicrobial activity among soil bacteria
Tyc, O., van den Berg, M., Gerards, S., van Veen, J. A., Raaijmakers, J. M., de Boer, W., & Garbeva, P. (2014) · Frontiers in Microbiology · doi:10.3389/fmicb.2014.00567 · Cited by 150
Intraspecific genotypic richness and relatedness predict the invasibility of microbial communities
Jousset, A., Schulz, W., Scheu, S., & Eisenhauer, N. (2011) · The ISME Journal · doi:10.1038/ismej.2011.9 · Cited by 142
Self-citationBiodiversity acts as insurance of productivity of bacterial communities under abiotic perturbations
Awasthi, A., Singh, M., Soni, S. K., Singh, R., & Kalra, A. (2014) · The ISME Journal · doi:10.1038/ismej.2014.91 · Cited by 141
Rabbi, S. M. F., Daniel, H., Lockwood, P. V., Macdonald, C. A., Pereg, L. L., Tighe, M. K., Wilson, B. R., & Young, I. M. (2016) · Scientific Reports · doi:10.1038/srep33012 · Cited by 139
Non‐random species loss in bacterial communities reduces antifungal volatile production
Hol, W. H. G., Garbeva, P., Hordijk, C. A., Hundscheid, M. P. J., Gunnewiek, P. J. A. K., van Agtmaal, M., Kuramae, E. E., & de Boer, W. (2015) · Ecology · doi:10.1890/14-2359.1 · Cited by 136
Jiang, L., Pu, Z., & Nemergut, D. R. (2008) · Oikos · doi:10.1111/j.0030-1299.2008.16401.x · Cited by 133
Diversity of protists and bacteria determines predation performance and stability
Saleem, M., Fetzer, I., Harms, H., & Chatzinotas, A. (2013) · The ISME Journal · doi:10.1038/ismej.2013.95 · Cited by 121
Self-citationKinkel, L. L., Schlatter, D., Xiao, K., & Baines, A. D. (2013) · The ISME Journal · doi:10.1038/ismej.2013.175 · Cited by 121
Yang, W., Xu, X., Li, Y., Wang, Y., Li, M., Wang, Y., Ding, X., & Chu, Z. (2016) · PLoS ONE · doi:10.1371/journal.pone.0146910 · Cited by 116
Hu, J., Wei, Z., Weidner, S., Friman, V., Xu, Y.-C., SHEN, Q.-R., & Jousset, A. (2017) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2017.05.029 · Cited by 116
Self-citationVolatiles in Inter-Specific Bacterial Interactions
Tyc, O., Zweers, H., de Boer, W., & Garbeva, P. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.01412 · Cited by 115
Phenotypic Variation of Pseudomonas brassicacearum as a Plant Root-Colonization Strategy
Achouak, W., Conrod, S., Cohen, V., & Heulin, T. (2004) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi.2004.17.8.872 · Cited by 114
Bacterial diversity amplifies nutrient‐based plant–soil feedbacks
Weidner, S., Koller, R., Latz, E., Kowalchuk, G. A., Bonkowski, M., Scheu, S., & Jousset, A. (2015) · Functional Ecology · doi:10.1111/1365-2435.12445 · Cited by 112
Self-citationMeng, L., Sun, T., Li, M., Saleem, M., Zhang, Q., & Wang, C. (2018) · Ecotoxicology and Environmental Safety · doi:10.1016/j.ecoenv.2018.12.065 · Cited by 112
Self-citationToxic metal resistance in biofilms: diversity of microbial responses and their evolution
Koechler, S., Farasin, J., Cleiss-Arnold, J., & Arsène‐Ploetze, F. (2015) · Research in Microbiology · doi:10.1016/j.resmic.2015.03.008 · Cited by 110
A Linear Model Method for Biodiversity-Ecosystem Functioning Experiments
Bell, T., Lilley, A. K., Hector, A., Schmid, B., King, L., & Newman, J. A. (2009) · The American Naturalist · doi:10.1086/647931 · Cited by 110
Ji, P., & Wilson, M. (2002) · Applied and Environmental Microbiology · doi:10.1128/aem.68.9.4383-4389.2002 · Cited by 101
Pang, G., Cai, F. M., Li, R., Zhao, Z., Li, R., Gu, X., Shen, Q., & Chen, W. (2017) · Plant and Soil · doi:10.1007/s11104-017-3178-0 · Cited by 101
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Saleem, M., Meckes, N. A., Pervaiz, Z. H., & Traw, M. B. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00041 · Cited by 100
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Degens, B. P., & Sparling, G. P. (1995) · Plant and Soil · doi:10.1007/bf00011355 · Cited by 86
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“The first ideas on this topic were already developed around 1900 (Salisbury et al., 1997) and the development process has already started in the 1960s before the first human flew to space.”
BackgroundSekhohola-Dlamini, L. M., Keshinro, O. M., Masudi, W. L., & Cowan, A. K. (2022) · Minerals · doi:10.3390/min12020111 · Cited by 29
Metadata
- Authors
- Saleem, M., Hu, J., & Jousset, A.
- Affiliations
- Alabama State University (US)
- Utrecht University (NL)
- Corresponding author
- Saleem, Muhammad
- Venue
- Annual Review of Ecology, Evolution, and Systematics
- Publisher
- Annual Reviews
- Published
- 2019-11-02
- Volume
- 50
- Issue
- 1
- Pages
- 145-168
- ISSN
- 1543-592X (ISSN-L)
- 1545-2069
- OpenAlex
- W2963505278
- Cited by
- 437
- References
- 133
- Citations by year
- 2026: 48 · 2025: 77 · 2024: 86 · 2023: 68 · 2022: 76 · 2021: 50 · 2020: 25 · 2019: 5
- FWCI
- 3.47
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Annual Review of Ecology Evolution and Systematics (publishedVersion)
- HAL (submittedVersion)
- Utrecht University Repository (Utrecht University) (submittedVersion, other-oa)
- Utrecht University Repository (Utrecht University) (submittedVersion)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant-Microbe Interactions and Immunity
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Mycorrhizal Fungi and Plant Interactions
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Keywords
- soil microbiome, biodiversity-ecosystem functioning, plant growth, soil health, microbial community assembly, plant-microbe interactions, global change, sustainable food production
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