Identification of New Metabolites of Bacterial Transformation of Indole by Gas Chromatography-Mass Spectrometry and High Performance Liquid Chromatography
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Arthrobacter sp. SPG transformed indole completely in the presence of an additional carbon source. High performance liquid chromatography and gas chromatography-mass spectrometry detected indole-3-acetic acid, indole-3-glyoxylic acid, and indole-3-aldehyde as biotransformation products. This is the first report of the formation of indole-3-acetic acid, indole-3-glyoxylic acid, and indole-3-aldehyde from indole by any bacterium.
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Microorganisms use various mechanisms for complete biodegradation (mineralization) or transformation of indole compounds into other compounds, such as catechol, indole-3-aldehyde, 3-methylindole, and indigo.
“Microorganisms use various mechanisms for complete biodegradation (mineralization) or transformation of indole compounds into other compounds, such as catechol (Leveau and Lindow 2005), indole-3-aldehyde (Arora and Bae 2014), 3-methylindole (Arora et al. 2015a, b), and indigo (Ma et al. 2018).”
From Phosphate solubilization and indole acetic acid production by rhizosphere yeast Torulaspora globosa: improvement of culture conditions for better performance in vitro (2022) · cites this paper as Arora and Bae 2014
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Indole as an intercellular signal in microbial communities
Lee, J.-H., & Lee, J. (2010) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2009.00204.x · Cited by 1,059 · see citing works
Leveau, J. H. J., & Lindow, S. E. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.5.2365-2371.2005 · Cited by 286 · cited 1× · see citing works
“Leveau and Lindow [22] studied catabolism of indole-3-acetic acid by Pseudomonas putida strain 1290 that degraded indole-3-acetic acid via formation of catechol.”
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Research works printed but not linked: 23
- [1]Kamath A. V. Vaidyanathan C. S. New pathway for the biodegradation of indole in Aspergillus niger Applied and Environmental Microbiology 1990 56 1 275 280 2-s2.0-0025012839 2310183 PMC183311
- [2]Qu Y. Xu B. Zhang X. Ma Q. Zhou H. Kong C. Zhang Z. Zhou J. Biotransformation of indole by whole cells of recombinant biphenyl dioxygenase and biphenyl-2,3-dihydrodiol-2,3-dehydrogenase Biochemical Engineering Journal 2013 72 54 60 10.1016/j.bej.2012.12.021 2-s2.0-84872840312 · DOI
- [3]El-Shagi H. Schulte U. Zenk M. H. Specific inhibition of anthraquinone formation by amino compounds in Morinda cell cultures Naturwissenschaften 1984 71 5 267 10.1007/BF00441342 2-s2.0-0007532850 · DOI
- [5]Sakamoto Y. Uchida M. Ichibara K. The bacterial decomposition of indole. I. Studies on its metabolic pathway by successive adaptation Medical Journal of Osaka University 1953 3 477 486
- [6]Fujioka M. Wada H. The bacterial oxidation of indole Biochimica et Biophysica Acta 1968 158 1 70 78 10.1016/0304-4165(68)90073-1 2-s2.0-0014420114 5652436 · DOI
- [7]Claus G. Kutzner H. J. Degradation of indole by Alcaligenes spec Systematic and Applied Microbiology 1983 4 2 169 180 10.1016/S0723-2020(83)80046-0 2-s2.0-0020622839 23194589 · DOI
- [8]Wang Y.-T. Suidan M. T. Pfeffer J. T. Anaerobic biodegradation of indole to methane Applied and Environmental Microbiology 1984 48 5 1058 1060 2-s2.0-0021746254 16346664 PMC241678
- [9]Berry D. F. Madsen E. L. Bollag J.-M. Conversion of indole to oxindole under methanogenic conditions Applied and Environmental Microbiology 1987 53 1 180 182 2-s2.0-0023119666 3827245 PMC203622
- [10]Madsen E. L. Bollag J.-M. Pathway of indole metabolism by a denitrifying microbial community Archives of Microbiology 1988 151 1 71 76 10.1007/BF00444672 2-s2.0-34249968319 · DOI
- [11]Shi S. Ma F. Sun T. Li A. Zhou J. Qu Y. Biotransformation of indole to indigo by the whole cells of phenol hydroxylase engineered strain in biphasic systems Applied Biochemistry and Biotechnology 2013 169 4 1088 1097 10.1007/s12010-012-0069-y 2-s2.0-84883047986 23306892 · DOI
- [12]Arora P. K. Metabolism of para-nitrophenol in Arthrobacter sp. SPG E3 Journal of Environmental Research and Management 2012 3 52 57
- [13]Fett W. F. Osman S. F. Dunn M. F. Auxin production of plant-pathogenic pseudomonads and xanthomonads Applied and Environmental Microbiology 1987 53 1839 1845 16347409 PMC204010
- [14]Matsukawa E. Nakagawa Y. Iimura Y. Hayakawa M. Stimulatory effect of indole-3-acetic acid on aerial mycelium formation and antibiotic production in Streptomyces spp Actinomycetologica 2007 21 32 39 10.3209/saj.SAJ210105 · DOI
- [15]Forni C. Riov J. Caiola M. G. Tel-Or E. Indole-3-acetic acid (IAA) production by Arthrobacter species isolated from Azolla Journal of General Microbiology 1992 138 2 377 381 10.1099/00221287-138-2-377 2-s2.0-0026565251 1564446 · DOI
- [16]Idris E. E. Iglesias D. J. Talon M. Borriss R. Tryptophan-dependent production of Indole-3-Acetic Acid (IAA) affects level of plant growth promotion by Bacillus amyloliquefaciens FZB42 Molecular Plant-Microbe Interactions 2007 20 6 619 626 10.1094/MPMI-20-6-0619 2-s2.0-34250666615 17555270 · DOI
- [17]Vandeputte O. Öden S. Mol A. Vereecke D. Goethals K. Jaziri M. E. Prinsen E. Biosynthesis of auxin by the gram-positive phytopathogen Rhodococcus fascians is controlled by compounds specific to infected plant tissues Applied and Environmental Microbiology 2005 71 3 1169 1177 10.1128/AEM.71.3.1169-1177.2005 2-s2.0-15444362611 15746315 PMC1065166 · DOI
- [19]Spaepen S. Vanderleyden J. Remans R. Indole-3-acetic acid in microbial and microorganism-plant signaling FEMS Microbiology Reviews 2007 31 4 425 448 10.1111/j.1574-6976.2007.00072.x 2-s2.0-34250331207 17509086 · DOI · Paper page
- [20]Stutz R. E. Enzymatic formation of indole-3-carboxaldehyde from indole-3-acetic acid Plant Physiology 1958 33 3 207 212 16655114 PMC541062
- [21]Shahab S. Ahmed N. Khan N. S. Indole acetic acid production and enhanced plant growth promotion by indigenous PSBs African Journal of Agricultural Research 2009 4 11 1312 1316 2-s2.0-74249119061
- [23]Proctor M. H. Bacterial dissimilation of indoleacetic acid: a new route of breakdown of the indole nucleus Nature 1958 181 4619 1345 10.1038/1811345a0 2-s2.0-0005548147 13541474 · DOI
- [24]Egebo L. A. Nielsen S. V. S. Jochimsen B. U. Oxygen-dependent catabolism of indole-3-acetic acid in Bradyrhizobium japonicum Journal of Bacteriology 1991 173 15 4897 4901 2-s2.0-0025783463 1856182 PMC208170
- [25]Jensen J. B. Egsgaard H. van Onckelen H. Jochimsen B. U. Catabolism of indole-3-acetic acid and 4- and 5-chloroindole-3-acetic acid in Bradyrhizobium japonicum Journal of Bacteriology 1995 177 20 5762 5766 2-s2.0-0028785995 7592320 PMC177395
- [26]Arora P. K. Srivastava A. Singh V. Novel degradation pathway of 2-chloro-4-345 aminophenol in Arthrobacter sp. SPG PeerJ PrePrint 2014 2 e194v1 PMC4251673 25427856
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Albertini, J., Rocha, R. K., Bastos, R. G., Ceccato-Antonini, S. R., & Rosa-Magri, M. M. (2022) · 3 Biotech · doi:10.1007/s13205-022-03322-z · Cited by 5 · see citing works
- Authors
- Arora, P. K., & Bae, H.
- Affiliations
- Yeungnam University (KR)
- Corresponding author
- Arora, Pankaj Kumar
- Venue
- International Journal of Analytical Chemistry
- Publisher
- Wiley
- Published
- 2014
- Volume
- 2014
- Pages
- 1-5
- ISSN
- 1687-8760 (ISSN-L)
- 1687-8779
- PMC
- PMC4274814
- OpenAlex
- W1970226337
- Cited by
- 38
- References
- 2
- Citations by year
- 2025: 2 · 2024: 2 · 2023: 3 · 2022: 14 · 2021: 2 · 2020: 2 · 2019: 2 · 2018: 4 · 2017: 3 · 2015: 3
- FWCI
- 1.41
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- International Journal of Analytical Chemistry (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Topics
- Physical Sciences › Environmental Science › Pollution › Microbial bioremediation and biosurfactants
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biotechnology › Biochemical and biochemical processes
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Steroid Chemistry and Biochemistry
- Keywords
- Arthrobacter, indole-3-acetic acid, indole-3-carboxaldehyde, bacterial metabolism, metabolite identification, carbon source
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