Cited by 23Chronic Lymphocytic Leukemia ResearchLymphoma Diagnosis and TreatmentAcute Lymphoblastic Leukemia research

CD49d Expression Identifies a Biologically Distinct Subtype of Chronic Lymphocytic Leukemia with Inferior Progression-Free Survival on BTK Inhibitor Therapy

Open access
Alsadhan, Anfal, Chen, Jonathan, Gaglione, Erika M., Underbayev, Chingiz, Tuma, Pamela L., Tian, Xin, Freeman, Lita A., Baskar, Sivasubramanian +9 more·2023·Clinical Cancer Research

Published version of a preprint

Abstract

Purpose: To determine the role of CD49d for response to Bruton's tyrosine kinase inhibitors (BTKi) in patients with chronic lymphocytic leukemia (CLL). Patients and Methods: In patients treated with acalabrutinib (n = 48), CD49d expression, VLA-4 integrin activation, and tumor transcriptomes of CLL cells were assessed. Clinical responses to BTKis were investigated in acalabrutinib- (n = 48; NCT02337829) and ibrutinib-treated (n = 73; NCT01500733) patients. Results: In patients treated with acalabrutinib, treatment-induced lymphocytosis was comparable for both subgroups but resolved more rapidly for CD49d+ cases. Acalabrutinib inhibited constitutive VLA-4 activation but was insufficient to block BCR and CXCR4–mediated inside–out activation. Transcriptomes of CD49d+ and CD49d− cases were compared using RNA sequencing at baseline and at 1 and 6 months on treatment. Gene set enrichment analysis revealed increased constitutive NF-κB and JAK–STAT signaling, enhanced survival, adhesion, and migratory capacity in CD49d+ over CD49d− CLL that was maintained during therapy. In the combined cohorts of 121 BTKi-treated patients, 48 (39.7%) progressed on treatment with BTK and/or PLCG2 mutations detected in 87% of CLL progressions. Consistent with a recent report, homogeneous and bimodal CD49d-positive cases (the latter having concurrent CD49d+ and CD49d− CLL subpopulations, irrespective of the traditional 30% cutoff value) had a shorter time to progression of 6.6 years, whereas 90% of cases homogenously CD49d− were estimated progression-free at 8 years (P = 0.0004). Conclusions: CD49d/VLA-4 emerges as a microenvironmental factor that contributes to BTKi resistance in CLL. The prognostic value of CD49d is improved by considering bimodal CD49d expression. See related commentary by Tissino et al., p. 3560

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1158/1078-0432.ccr-22-3217

Cites

3 of 3 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Positive or bimodal CD49d expression portends inferior PFS compared to cases entirely negative for CD49d.

    “Positive or bimodal CD49d expression portends inferior PFS compared to cases entirely negative for CD49d(49, 52).”

    From Resistance Mechanisms and Approach to Chronic Lymphocytic Leukemia after BTK Inhibitor Therapy (2025) · cites this paper as [49]

    The Results section reports shorter time to progression for positive or bimodal CD49d cases than for uniformly negative cases in patients receiving BTK inhibitors. The claim omits that treatment setting and calls the measured outcome PFS rather than time to progression, so it is broader than the paper’s direct finding. No page number is available in our copy. (LLM, conf=0.84)

    Experimental — accuracy not yet measured
  • Within the TME, the integrin very late antigen 4 (VLA-4) has a major role in B-cell development and function and is a master regulator of cell-cell and cell-matrix interactions via binding to vascular cell adhesion molecule-1 (VCAM-1) and fibronectin.

    “Within the TME, the integrin very late antigen 4 (VLA-4) has a major role in B-cell development and function and isa master regulator of cell-cell and cell-matrix interactions via binding to vascular cell adhesion molecule-1 (VCAM-1) and fibronectin(49).”

    From Resistance Mechanisms and Approach to Chronic Lymphocytic Leukemia after BTK Inhibitor Therapy (2025) · cites this paper as [49]

    Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

    Experimental — accuracy not yet measured
  • Treatment with BTKi does not completely block VLA-4 activation, leading to pro-survival and activation signals.

    “Treatment with BTKidoes not completely block this mechanism, leading to pro-survival and activation signals (49).”
  • CD49d is a strong prognostic factor in patients with CLL treated with ibrutinib or acalabrutinib.

    “CD49d is a strong prognostic factor in patients with CLL treated with ibrutinib or acalabrutinib(49).”
  • Bimodal CD49d expression correlates with shorter PFS in ibrutinib and acalabrutinib-treated patients.

    “Moreover, bimodal CD49d expression correlates with shorter PFS in ibrutinib and acalabrutinib-treated patients(49).”

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 38

  1. [1]Wiestner A, The role of B-cell receptor inhibitors in the treatment of patients with chronic lymphocytic leukemia. Haematologica, 2015. 100(12): p. 1495– 507. 26628631 PMC4666325
  2. [2]Byrd JC,, Targeting BTK with ibrutinib in relapsed chronic lymphocytic leukemia. N Engl J Med, 2013. 369(1): p. 32– 42. 23782158 PMC3772525
  3. [3]Byrd JC,, Acalabrutinib Versus Ibrutinib in Previously Treated Chronic Lymphocytic Leukemia: Results of the First Randomized Phase III Trial. J Clin Oncol, 2021. 39(31): p. 3441– 3452. 34310172 PMC8547923
  4. [4]Brown JR,, Zanubrutinib or Ibrutinib in Relapsed or Refractory Chronic Lymphocytic Leukemia. N Engl J Med, 2023. 388(4): p. 319– 332. 36511784
  5. [5]Ahn IE,, Prediction of Outcome in Patients With Chronic Lymphocytic Leukemia Treated With Ibrutinib: Development and Validation of a Four-Factor Prognostic Model. J Clin Oncol, 2021. 39(6): p. 576– 585. 33026937 PMC8189626
  6. [7]Tissino E,, CD49d promotes disease progression in chronic lymphocytic leukemia: new insights from CD49d bimodal expression. Blood, 2020. 135(15): p. 1244– 1254. 32006000 PMC7228464
  7. [8]Ahn IE,, Clonal evolution leading to ibrutinib resistance in chronic lymphocytic leukemia. Blood, 2017. 129(11): p. 1469– 1479. 28049639 PMC5356450
  8. [9]Woyach JA,, BTK(C481S)-Mediated Resistance to Ibrutinib in Chronic Lymphocytic Leukemia. J Clin Oncol, 2017. 35(13): p. 1437– 1443. 28418267 PMC5455463
  9. [10]Herman SE,, Ibrutinib-induced lymphocytosis in patients with chronic lymphocytic leukemia: correlative analyses from a phase II study. Leukemia, 2014. 28(11): p. 2188– 96. 24699307 PMC4185271
  10. [11]de Rooij MF,, The clinically active BTK inhibitor PCI-32765 targets B-cell receptor- and chemokine-controlled adhesion and migration in chronic lymphocytic leukemia. Blood, 2012. 119(11): p. 2590– 4. 22279054
  11. [12]Herman SE,, Treatment with Ibrutinib Inhibits BTK− and VLA-4-Dependent Adhesion of Chronic Lymphocytic Leukemia Cells In Vivo. Clin Cancer Res, 2015. 21(20): p. 4642– 51. 26089373 PMC4609275
  12. [13]Dal Bo M,, Microenvironmental interactions in chronic lymphocytic leukemia: hints for pathogenesis and identification of targets for rational therapy. Curr Pharm Des, 2012. 18(23): p. 3323– 34. 22591383
  13. [14]Dal Bo M,, Microenvironmental Interactions in Chronic Lymphocytic Leukemia: The Master Role of CD49d. Semin Hematol, 2014. 51(3): p. 168– 76. 25048781
  14. [15]Bulian P,, CD49d Is the Strongest Flow Cytometry-Based Predictor of Overall Survival in Chronic Lymphocytic Leukemia. J Clin Oncol, 2014. 32(9): p. 897– 904. 24516016 PMC4876311
  15. [16]Zucchetto A,, The CD49d/CD29 complex is physically and functionally associated with CD38 in B-cell chronic lymphocytic leukemia cells. Leukemia, 2012. 26(6): p. 1301– 12. 22289918
  16. [17]Bulian P,, CD49d expression in chronic lymphocytic leukemia: a prognostic parameter and a therapeutic target. Future Oncol, 2008. 4(3): p. 355– 8. 18518761
  17. [18]Sun C,, Clinical and biological implications of target occupancy in CLL treated with the BTK inhibitor acalabrutinib. Blood, 2020. 136(1): p. 93– 105. 32202637 PMC7332900
  18. [19]Alsadhan A,, Pharmacodynamic Analysis of BTK Inhibition in Patients with Chronic Lymphocytic Leukemia Treated with Acalabrutinib. Clin Cancer Res, 2020. 26(12): p. 2800– 2809. 32054731 PMC8301526
  19. [20]Gattei V,, Relevance of CD49d protein expression as overall survival and progressive disease prognosticator in chronic lymphocytic leukemia. Blood, 2008. 111(2): p. 865– 73. 17959854
  20. [21]Ahn IE,, Depth and durability of response to ibrutinib in CLL: 5-year follow-up of a phase 2 study. Blood, 2018. 131(21): p. 2357– 2366. 29483101 PMC5969380
  21. [22]Chigaev A,, Real time analysis of the affinity regulation of alpha 4-integrin. The physiologically activated receptor is intermediate in affinity between resting and Mn(2+) or antibody activation. J Biol Chem, 2001. 276(52): p. 48670– 8. 11641394
  22. [24]Love MI, Huber W, and Anders S, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol, 2014. 15(12): p. 550. 25516281 PMC4302049
  23. [26]Mhibik M,, BTK inhibitors, irrespective of ITK inhibition, increase efficacy of a CD19/CD3-bispecific antibody in CLL. Blood, 2021. 138(19): p. 1843– 1854. 34046681 PMC8586964
  24. [27]Farooqui MZ,, Ibrutinib for previously untreated and relapsed or refractory chronic lymphocytic leukaemia with TP53 aberrations: a phase 2, single-arm trial. Lancet Oncol, 2015. 16(2): p. 169– 76. 25555420 PMC4342187
  25. [28]Cao Z,, Role of Kruppel-like factors in leukocyte development, function, and disease. Blood, 2010. 116(22): p. 4404– 14. 20616217 PMC2996110
  26. [29]Delogu A,, Gene repression by Pax5 in B cells is essential for blood cell homeostasis and is reversed in plasma cells. Immunity, 2006. 24(3): p. 269– 81. 16546096
  27. [30]Feske S,, Gene regulation mediated by calcium signals in T lymphocytes. Nat Immunol, 2001. 2(4): p. 316– 24. 11276202
  28. [31]Haaland RE, Yu W, and Rice AP, Identification of LKLF-regulated genes in quiescent CD4+ T lymphocytes. Mol Immunol, 2005. 42(5): p. 627– 41. 15607822
  29. [32]Peragine N,, Modulated expression of adhesion, migration and activation molecules may predict the degree of response in chronic lymphocytic leukemia patients treated with ibrutinib plus rituximab. Haematologica, 2020. 106(5): p. 1500– 1503. 33054124 PMC8094098
  30. [33]Brachtl G,, Differential bone marrow homing capacity of VLA-4 and CD38 high expressing chronic lymphocytic leukemia cells. PLoS One, 2011. 6(8): p. e23758. 21876768 PMC3158106
  31. [34]Burger JA,, Leukemia cell proliferation and death in chronic lymphocytic leukemia patients on therapy with the BTK inhibitor ibrutinib. JCI Insight, 2017. 2(2): p. e89904. 28138560 PMC5256142
  32. [35]Herman SE,, Ibrutinib inhibits BCR and NF-kappaB signaling and reduces tumor proliferation in tissue-resident cells of patients with CLL. Blood, 2014. 123(21): p. 3286– 95. 24659631 PMC4046423
  33. [36]de Rooij MF,, Ibrutinib and idelalisib target B cell receptor- but not CXCL12/CXCR4-controlled integrin-mediated adhesion in Waldenstrom macroglobulinemia. Haematologica, 2016. 101(3): p. e111– 5. 26635033 PMC4815740
  34. [37]Benedetti D,, NOTCH1 mutations are associated with high CD49d expression in chronic lymphocytic leukemia: link between the NOTCH1 and the NF-kappaB pathways. Leukemia, 2018. 32(3): p. 654– 662. 28935990
  35. [38]Zucchetto A,, CD49d is overexpressed by trisomy 12 chronic lymphocytic leukemia cells: evidence for a methylation-dependent regulation mechanism. Blood, 2013. 122(19): p. 3317– 21. 24068493
  36. [39]Pepper AGS,, Combined analysis of IGHV mutations, telomere length and CD49d identifies long-term progression-free survivors in TP53 wild-type CLL treated with FCR-based therapies. Leukemia, 2022. 36(1): p. 271– 274. 34148055 PMC8727296
  37. [40]Niemann CU,, Disruption of in vivo chronic lymphocytic leukemia tumor-microenvironment interactions by ibrutinib - findings from an investigator-initiated phase II study. Clin Cancer Res, 2016. 22(7): p. 1572– 82. 26660519 PMC4818677
  38. [41]Sun C,, The immune microenvironment shapes transcriptional and genetic heterogeneity in chronic lymphocytic leukemia. Blood Adv, 2023. 7(1): p. 145– 158. 35358998 PMC9811214

Cited by

Sorted by citations

Authors
Alsadhan, A., Chen, J., Gaglione, E. M., Underbayev, C., Tuma, P. L., Tian, X., Freeman, L. A., Baskar, S., Nierman, P., Soto, S., Itsara, A., Ahn, I. E., Sun, C., Bibikova, E., Hartmann, T. N., Mhibik, M., & Wiestner, A.
Affiliations
  • National Institutes of Health (US)
  • Catholic University of America (US)
  • 5AstraZeneca South San Francisco, California.
  • University of Freiburg (DE)
Corresponding author
Wiestner, Adrian
Venue
Clinical Cancer Research
Published
2023-05-09
Volume
29
Issue
18
Pages
3612-3621
ISSN
  • 1078-0432 (ISSN-L)
  • 1557-3265
OpenAlex
W4375955361
Cited by
23
References
3
Citations by year
2026: 4 · 2025: 8 · 2024: 7 · 2023: 4
FWCI
3.99
Type
journal article
Language
en
Open access
Locations
  • Clinical Cancer Research (publishedVersion)
  • PubMed (publishedVersion)
  • PubMed Central (acceptedVersion)
Funders
NHLBI Division of Intramural Research (HL002346-15)
Topics
  • Health Sciences › Medicine › Genetics › Chronic Lymphocytic Leukemia Research
  • Health Sciences › Medicine › Pathology and Forensic Medicine › Lymphoma Diagnosis and Treatment
  • Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Acute Lymphoblastic Leukemia research
Keywords
CD49d, VLA-4 integrin, chronic lymphocytic leukemia, BTK inhibitors, acalabrutinib, ibrutinib, BTK inhibitor resistance, progression-free survival, tumor microenvironment, NF-κB signaling, JAK/STAT signaling, PLCG2 mutations, tumor transcriptome, cell adhesion and migration
MeSH terms
Agammaglobulinaemia Tyrosine Kinase, Progression-Free Survival, Clinical Relevance, Benzamides, Humans, Pyrazines, Leukemia, Lymphocytic, Chronic, B-Cell, Integrin alpha4beta1, Protein Kinase Inhibitors

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review