CD49d Expression Identifies a Biologically Distinct Subtype of Chronic Lymphocytic Leukemia with Inferior Progression-Free Survival on BTK Inhibitor Therapy
Open accessPublished version of a preprint
Abstract
Purpose: To determine the role of CD49d for response to Bruton's tyrosine kinase inhibitors (BTKi) in patients with chronic lymphocytic leukemia (CLL). Patients and Methods: In patients treated with acalabrutinib (n = 48), CD49d expression, VLA-4 integrin activation, and tumor transcriptomes of CLL cells were assessed. Clinical responses to BTKis were investigated in acalabrutinib- (n = 48; NCT02337829) and ibrutinib-treated (n = 73; NCT01500733) patients. Results: In patients treated with acalabrutinib, treatment-induced lymphocytosis was comparable for both subgroups but resolved more rapidly for CD49d+ cases. Acalabrutinib inhibited constitutive VLA-4 activation but was insufficient to block BCR and CXCR4–mediated inside–out activation. Transcriptomes of CD49d+ and CD49d− cases were compared using RNA sequencing at baseline and at 1 and 6 months on treatment. Gene set enrichment analysis revealed increased constitutive NF-κB and JAK–STAT signaling, enhanced survival, adhesion, and migratory capacity in CD49d+ over CD49d− CLL that was maintained during therapy. In the combined cohorts of 121 BTKi-treated patients, 48 (39.7%) progressed on treatment with BTK and/or PLCG2 mutations detected in 87% of CLL progressions. Consistent with a recent report, homogeneous and bimodal CD49d-positive cases (the latter having concurrent CD49d+ and CD49d− CLL subpopulations, irrespective of the traditional 30% cutoff value) had a shorter time to progression of 6.6 years, whereas 90% of cases homogenously CD49d− were estimated progression-free at 8 years (P = 0.0004). Conclusions: CD49d/VLA-4 emerges as a microenvironmental factor that contributes to BTKi resistance in CLL. The prognostic value of CD49d is improved by considering bimodal CD49d expression. See related commentary by Tissino et al., p. 3560
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Positive or bimodal CD49d expression portends inferior PFS compared to cases entirely negative for CD49d.
“Positive or bimodal CD49d expression portends inferior PFS compared to cases entirely negative for CD49d(49, 52).”
From Resistance Mechanisms and Approach to Chronic Lymphocytic Leukemia after BTK Inhibitor Therapy (2025) · cites this paper as [49]
The Results section reports shorter time to progression for positive or bimodal CD49d cases than for uniformly negative cases in patients receiving BTK inhibitors. The claim omits that treatment setting and calls the measured outcome PFS rather than time to progression, so it is broader than the paper’s direct finding. No page number is available in our copy. (LLM, conf=0.84)
Experimental — accuracy not yet measuredWithin the TME, the integrin very late antigen 4 (VLA-4) has a major role in B-cell development and function and is a master regulator of cell-cell and cell-matrix interactions via binding to vascular cell adhesion molecule-1 (VCAM-1) and fibronectin.
“Within the TME, the integrin very late antigen 4 (VLA-4) has a major role in B-cell development and function and isa master regulator of cell-cell and cell-matrix interactions via binding to vascular cell adhesion molecule-1 (VCAM-1) and fibronectin(49).”
From Resistance Mechanisms and Approach to Chronic Lymphocytic Leukemia after BTK Inhibitor Therapy (2025) · cites this paper as [49]
Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measuredTreatment with BTKi does not completely block VLA-4 activation, leading to pro-survival and activation signals.
“Treatment with BTKidoes not completely block this mechanism, leading to pro-survival and activation signals (49).”
From Resistance Mechanisms and Approach to Chronic Lymphocytic Leukemia after BTK Inhibitor Therapy (2025) · cites this paper as [49]
CD49d is a strong prognostic factor in patients with CLL treated with ibrutinib or acalabrutinib.
“CD49d is a strong prognostic factor in patients with CLL treated with ibrutinib or acalabrutinib(49).”
From Resistance Mechanisms and Approach to Chronic Lymphocytic Leukemia after BTK Inhibitor Therapy (2025) · cites this paper as [49]
Bimodal CD49d expression correlates with shorter PFS in ibrutinib and acalabrutinib-treated patients.
“Moreover, bimodal CD49d expression correlates with shorter PFS in ibrutinib and acalabrutinib-treated patients(49).”
From Resistance Mechanisms and Approach to Chronic Lymphocytic Leukemia after BTK Inhibitor Therapy (2025) · cites this paper as [49]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Subramanian, A., Tamayo, P., Mootha, V. K., Mukherjee, S., Ebert, B. L., Gillette, M. A., Paulovich, A., Pomeroy, S. L., Golub, T. R., Lander, E. S., et al. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0506580102 · Cited by 53,625 · see citing works
The evolutionary landscape of chronic lymphocytic leukemia treated with ibrutinib targeted therapy
Landau, D. A., Sun, C., Rosebrock, D., Herman, S. E. M., Fein, J., Sivina, M., Underbayev, C., Liu, D., Hoellenriegel, J., Ravichandran, S., et al. (2017) · Nature Communications · doi:10.1038/s41467-017-02329-y · Cited by 176 · see citing works
Self-citationTissino, E., Benedetti, D., Herman, S. E. M., ten Hacken, E., Ahn, I. E., Chaffee, K. G., Rossi, F. M., Dal Bo, M., Bulian, P., Bomben, R., et al. (2018) · Journal of Experimental Medicine · doi:10.1084/jem.20171288 · Cited by 92 · see citing works
Self-citation
Flagged first, then by citations
Research works printed but not linked: 38
- [1]Wiestner A, The role of B-cell receptor inhibitors in the treatment of patients with chronic lymphocytic leukemia. Haematologica, 2015. 100(12): p. 1495– 507. 26628631 PMC4666325
- [2]Byrd JC,, Targeting BTK with ibrutinib in relapsed chronic lymphocytic leukemia. N Engl J Med, 2013. 369(1): p. 32– 42. 23782158 PMC3772525
- [3]Byrd JC,, Acalabrutinib Versus Ibrutinib in Previously Treated Chronic Lymphocytic Leukemia: Results of the First Randomized Phase III Trial. J Clin Oncol, 2021. 39(31): p. 3441– 3452. 34310172 PMC8547923
- [4]Brown JR,, Zanubrutinib or Ibrutinib in Relapsed or Refractory Chronic Lymphocytic Leukemia. N Engl J Med, 2023. 388(4): p. 319– 332. 36511784
- [5]Ahn IE,, Prediction of Outcome in Patients With Chronic Lymphocytic Leukemia Treated With Ibrutinib: Development and Validation of a Four-Factor Prognostic Model. J Clin Oncol, 2021. 39(6): p. 576– 585. 33026937 PMC8189626
- [7]Tissino E,, CD49d promotes disease progression in chronic lymphocytic leukemia: new insights from CD49d bimodal expression. Blood, 2020. 135(15): p. 1244– 1254. 32006000 PMC7228464
- [8]Ahn IE,, Clonal evolution leading to ibrutinib resistance in chronic lymphocytic leukemia. Blood, 2017. 129(11): p. 1469– 1479. 28049639 PMC5356450
- [9]Woyach JA,, BTK(C481S)-Mediated Resistance to Ibrutinib in Chronic Lymphocytic Leukemia. J Clin Oncol, 2017. 35(13): p. 1437– 1443. 28418267 PMC5455463
- [10]Herman SE,, Ibrutinib-induced lymphocytosis in patients with chronic lymphocytic leukemia: correlative analyses from a phase II study. Leukemia, 2014. 28(11): p. 2188– 96. 24699307 PMC4185271
- [11]de Rooij MF,, The clinically active BTK inhibitor PCI-32765 targets B-cell receptor- and chemokine-controlled adhesion and migration in chronic lymphocytic leukemia. Blood, 2012. 119(11): p. 2590– 4. 22279054
- [12]Herman SE,, Treatment with Ibrutinib Inhibits BTK− and VLA-4-Dependent Adhesion of Chronic Lymphocytic Leukemia Cells In Vivo. Clin Cancer Res, 2015. 21(20): p. 4642– 51. 26089373 PMC4609275
- [13]Dal Bo M,, Microenvironmental interactions in chronic lymphocytic leukemia: hints for pathogenesis and identification of targets for rational therapy. Curr Pharm Des, 2012. 18(23): p. 3323– 34. 22591383
- [14]Dal Bo M,, Microenvironmental Interactions in Chronic Lymphocytic Leukemia: The Master Role of CD49d. Semin Hematol, 2014. 51(3): p. 168– 76. 25048781
- [15]Bulian P,, CD49d Is the Strongest Flow Cytometry-Based Predictor of Overall Survival in Chronic Lymphocytic Leukemia. J Clin Oncol, 2014. 32(9): p. 897– 904. 24516016 PMC4876311
- [16]Zucchetto A,, The CD49d/CD29 complex is physically and functionally associated with CD38 in B-cell chronic lymphocytic leukemia cells. Leukemia, 2012. 26(6): p. 1301– 12. 22289918
- [17]Bulian P,, CD49d expression in chronic lymphocytic leukemia: a prognostic parameter and a therapeutic target. Future Oncol, 2008. 4(3): p. 355– 8. 18518761
- [18]Sun C,, Clinical and biological implications of target occupancy in CLL treated with the BTK inhibitor acalabrutinib. Blood, 2020. 136(1): p. 93– 105. 32202637 PMC7332900
- [19]Alsadhan A,, Pharmacodynamic Analysis of BTK Inhibition in Patients with Chronic Lymphocytic Leukemia Treated with Acalabrutinib. Clin Cancer Res, 2020. 26(12): p. 2800– 2809. 32054731 PMC8301526
- [20]Gattei V,, Relevance of CD49d protein expression as overall survival and progressive disease prognosticator in chronic lymphocytic leukemia. Blood, 2008. 111(2): p. 865– 73. 17959854
- [21]Ahn IE,, Depth and durability of response to ibrutinib in CLL: 5-year follow-up of a phase 2 study. Blood, 2018. 131(21): p. 2357– 2366. 29483101 PMC5969380
- [22]Chigaev A,, Real time analysis of the affinity regulation of alpha 4-integrin. The physiologically activated receptor is intermediate in affinity between resting and Mn(2+) or antibody activation. J Biol Chem, 2001. 276(52): p. 48670– 8. 11641394
- [24]Love MI, Huber W, and Anders S, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol, 2014. 15(12): p. 550. 25516281 PMC4302049
- [26]Mhibik M,, BTK inhibitors, irrespective of ITK inhibition, increase efficacy of a CD19/CD3-bispecific antibody in CLL. Blood, 2021. 138(19): p. 1843– 1854. 34046681 PMC8586964
- [27]Farooqui MZ,, Ibrutinib for previously untreated and relapsed or refractory chronic lymphocytic leukaemia with TP53 aberrations: a phase 2, single-arm trial. Lancet Oncol, 2015. 16(2): p. 169– 76. 25555420 PMC4342187
- [28]Cao Z,, Role of Kruppel-like factors in leukocyte development, function, and disease. Blood, 2010. 116(22): p. 4404– 14. 20616217 PMC2996110
- [29]Delogu A,, Gene repression by Pax5 in B cells is essential for blood cell homeostasis and is reversed in plasma cells. Immunity, 2006. 24(3): p. 269– 81. 16546096
- [30]Feske S,, Gene regulation mediated by calcium signals in T lymphocytes. Nat Immunol, 2001. 2(4): p. 316– 24. 11276202
- [31]Haaland RE, Yu W, and Rice AP, Identification of LKLF-regulated genes in quiescent CD4+ T lymphocytes. Mol Immunol, 2005. 42(5): p. 627– 41. 15607822
- [32]Peragine N,, Modulated expression of adhesion, migration and activation molecules may predict the degree of response in chronic lymphocytic leukemia patients treated with ibrutinib plus rituximab. Haematologica, 2020. 106(5): p. 1500– 1503. 33054124 PMC8094098
- [33]Brachtl G,, Differential bone marrow homing capacity of VLA-4 and CD38 high expressing chronic lymphocytic leukemia cells. PLoS One, 2011. 6(8): p. e23758. 21876768 PMC3158106
- [34]Burger JA,, Leukemia cell proliferation and death in chronic lymphocytic leukemia patients on therapy with the BTK inhibitor ibrutinib. JCI Insight, 2017. 2(2): p. e89904. 28138560 PMC5256142
- [35]Herman SE,, Ibrutinib inhibits BCR and NF-kappaB signaling and reduces tumor proliferation in tissue-resident cells of patients with CLL. Blood, 2014. 123(21): p. 3286– 95. 24659631 PMC4046423
- [36]de Rooij MF,, Ibrutinib and idelalisib target B cell receptor- but not CXCL12/CXCR4-controlled integrin-mediated adhesion in Waldenstrom macroglobulinemia. Haematologica, 2016. 101(3): p. e111– 5. 26635033 PMC4815740
- [37]Benedetti D,, NOTCH1 mutations are associated with high CD49d expression in chronic lymphocytic leukemia: link between the NOTCH1 and the NF-kappaB pathways. Leukemia, 2018. 32(3): p. 654– 662. 28935990
- [38]Zucchetto A,, CD49d is overexpressed by trisomy 12 chronic lymphocytic leukemia cells: evidence for a methylation-dependent regulation mechanism. Blood, 2013. 122(19): p. 3317– 21. 24068493
- [39]Pepper AGS,, Combined analysis of IGHV mutations, telomere length and CD49d identifies long-term progression-free survivors in TP53 wild-type CLL treated with FCR-based therapies. Leukemia, 2022. 36(1): p. 271– 274. 34148055 PMC8727296
- [40]Niemann CU,, Disruption of in vivo chronic lymphocytic leukemia tumor-microenvironment interactions by ibrutinib - findings from an investigator-initiated phase II study. Clin Cancer Res, 2016. 22(7): p. 1572– 82. 26660519 PMC4818677
- [41]Sun C,, The immune microenvironment shapes transcriptional and genetic heterogeneity in chronic lymphocytic leukemia. Blood Adv, 2023. 7(1): p. 145– 158. 35358998 PMC9811214
Cited by
Sorted by citations
Resistance Mechanisms and Approach to Chronic Lymphocytic Leukemia after BTK Inhibitor Therapy
Gruessner, C., Wiestner, A., & Sun, C. (2025) · Leukemia & Lymphoma · doi:10.1080/10428194.2025.2466101 · Cited by 6 · see citing works
“…may trigger a cascade of molecular events eventually leading to increased vlA-4 activity and prevents apoptosis of B cells through tonic interactions with vcAM-1, the major ligand for vlA-4 [50]. cD49d is a strong prognostic factor in patients with cll treated with ibrutinib or acalabrutinib [48].”
InfluentialSelf-citation
- Authors
- Alsadhan, A., Chen, J., Gaglione, E. M., Underbayev, C., Tuma, P. L., Tian, X., Freeman, L. A., Baskar, S., Nierman, P., Soto, S., Itsara, A., Ahn, I. E., Sun, C., Bibikova, E., Hartmann, T. N., Mhibik, M., & Wiestner, A.
- Affiliations
- National Institutes of Health (US)
- Catholic University of America (US)
- 5AstraZeneca South San Francisco, California.
- University of Freiburg (DE)
- Corresponding author
- Wiestner, Adrian
- ORCID
- Venue
- Clinical Cancer Research
- Published
- 2023-05-09
- Volume
- 29
- Issue
- 18
- Pages
- 3612-3621
- ISSN
- 1078-0432 (ISSN-L)
- 1557-3265
- PMC
- PMC10524232
- OpenAlex
- W4375955361
- Cited by
- 23
- References
- 3
- Citations by year
- 2026: 4 · 2025: 8 · 2024: 7 · 2023: 4
- FWCI
- 3.99
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Clinical Cancer Research (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- NHLBI Division of Intramural Research (HL002346-15)
- Topics
- Health Sciences › Medicine › Genetics › Chronic Lymphocytic Leukemia Research
- Health Sciences › Medicine › Pathology and Forensic Medicine › Lymphoma Diagnosis and Treatment
- Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Acute Lymphoblastic Leukemia research
- Keywords
- CD49d, VLA-4 integrin, chronic lymphocytic leukemia, BTK inhibitors, acalabrutinib, ibrutinib, BTK inhibitor resistance, progression-free survival, tumor microenvironment, NF-κB signaling, JAK/STAT signaling, PLCG2 mutations, tumor transcriptome, cell adhesion and migration
- MeSH terms
- Agammaglobulinaemia Tyrosine Kinase, Progression-Free Survival, Clinical Relevance, Benzamides, Humans, Pyrazines, Leukemia, Lymphocytic, Chronic, B-Cell, Integrin alpha4beta1, Protein Kinase Inhibitors
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review