The DOI matches its Crossref record; 29 of the 29 references it cites were found in a registry or an index.
Modeling of Protein Interaction Networks
Abstract
We introduce a graph-generating model aimed at representing the evolution of protein interaction networks. The model is based on the hypothesis of evolution by duplication and divergence of the genes which produce proteins. The obtained graphs have multifractal properties recovering the absence of a characteristic connectivity as found in real data of protein interaction networks. The error tolerance of the model to random or targeted damage is in very good agreement with the behavior obtained in real protein network analyses. The proposed model is a first step in the identification of the evolutionary dynamics leading to the development of protein functions and interactions.
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Cites
Collective dynamics of ‘small-world’ networks
Watts, D. J., & Strogatz, S. H. (1998) · Nature · doi:10.1038/30918 · Cited by 43,060
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Statistical mechanics of complex networks
Albert, R., & Barabási, A.-L. (2002) · Reviews of Modern Physics · doi:10.1103/revmodphys.74.47 · Cited by 20,471
Strogatz, S. H. (2001) · Nature · doi:10.1038/35065725 · Cited by 8,302
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Error and attack tolerance of complex networks
Albert, R., Jeong, H., & Barabási, A.-L. (2000) · Nature · doi:10.1038/35019019 · Cited by 7,534
Error and attack tolerance of complex networksPreprint
Albert, R., Jeong, H., & Barabási, A.-Ĺ. (2000) · Cited by 6,467
Lethality and centrality in protein networks
Jeong, H., Mason, S. P., Barabási, A.-L., & Oltvai, Z. N. (2001) · Nature · doi:10.1038/35075138 · Cited by 5,287
A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae
Uetz, P., Giot, L., Cagney, G., Mansfield, T. A., Judson, R. S., Knight, J. R., Lockshon, D., Narayan, V., Srinivasan, M., Pochart, P., et al. (2000) · Nature · doi:10.1038/35001009 · Cited by 4,706
Random graphs with arbitrary degree distributions and their applications
Newman, M. E. J., Strogatz, S. H., & Watts, D. J. (2001) · Physical Review E · doi:10.1103/physreve.64.026118 · Cited by 3,648
Cited by
The Structure and Function of Complex Networks
Newman, M. E. J. (2003) · SIAM Review · doi:10.1137/s003614450342480 · Cited by 18,719
Network biology: understanding the cell's functional organization
Barabási, A.-L., & Oltvai, Z. N. (2004) · Nature Reviews Genetics · doi:10.1038/nrg1272 · Cited by 7,903
Newman, M. (2018) · doi:10.1093/oso/9780198805090.001.0001 · Cited by 2,297
Interactome Networks and Human Disease
Vidal, M., Cusick, M. E., & Barabási, A.-L. (2011) · Cell · doi:10.1016/j.cell.2011.02.016 · Cited by 1,771
Evidence for Network Evolution in an Arabidopsis Interactome Map
Arabidopsis Interactome Mapping Consortium, Dreze, M., Carvunis, A.-R., Charloteaux, B., Galli, M., Pevzner, S. J., Tasan, M., Ahn, Y.-Y., Balumuri, P., Barabási, A.-L., et al. (2011) · Science · doi:10.1126/science.1203877 · Cited by 893
Metadata
- Authors
- Vázquez, A., Flammini, A., Maritan, A., & Vespignani, A.
- Venue
- Complexus
- Publisher
- S. Karger AG
- Published
- 2002-12-11
- Volume
- 1
- Issue
- 1
- Pages
- 38-44
- ISSN
- 1424-8492 (ISSN-L)
- 1424-8506
- OpenAlex
- W2084668512
- Cited by
- 472
- References
- 29
- FWCI
- 5.29
- Type
- journal article
- Language
- en
- Open access
- closed
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
