Deep undepleted human serum proteome profiling toward biomarker discovery for Alzheimer’s disease

Dey, Kaushik Kumar, Wang, Hong, Niu, Mingming, Bai, Bing, Wang, Xusheng, Li, Yuxin, Cho, Ji-Hoon, Tan, Haiyan, Mishra, Ashutosh, High, Anthony A., Chen, Ping-Chung, Wu, Zhiping, Beach, Thomas G., Peng, Junmin·2019·Clinical Proteomics
DOI 10.1186/s12014-019-9237-1

Cited by (143)

Items 101–143 of 143

  1. Differential expression of MAP3K7 and TROPONIN C proteins and related perturbations in renal amyloidosis
    Nimisha Gupta, Tahreem Sahar, Dinesh Khullar, Swatantra Kumar Jain, Saima Wajid · 2020 · Expert Review of Proteomics
  2. Isotopic N,N-dimethyl leucine tags for absolute quantification of clusterin and apolipoprotein E in Alzheimer's disease
    Yuan Liu, Hua Zhang, Xiaofang Zhong, Zihui Li, Henrik Zetterberg, Lingjun Li · 2022 · Journal of Proteomics
  3. Construction of lanthanide ion MOF/HOF composite for the simultaneous identification of serum glycopeptides and phosphopeptides from type 2 diabetes
    Shi-Shu Yang, Yu-Heng Jiang, Yiwei Li, Li-Hong Liu, Hua Zhang · 2026 · Microchimica Acta
  4. The aggregate proteome of Caenorhabditis elegans mitochondria implicates shared mechanisms of aging and Alzheimer’s disease
    Sonu Pahal, Akshatha Ganne, Meenakshisundaram Balasubramaniam, Sue T. Griffin, Robert J. Shmookler Reis, Srinivas Ayyadevara · 2026 · Frontiers in Aging Neuroscience
  5. Noninvasive, Rapid, and Precise Identification of Esophageal Cancer via Salivary Extracellular Vesicle-Based Diagnosis
    Liu Huang, Meng Li, Wenpeng Liu, Doudou Lou, Qingfu Zhu, Ye Hu, Luke P. Lee, Fei Liu · 2026 · ACS Nano
  6. UBA1 knockdown dysregulates UBA1-sensitive proteins and impairs muscle function in models of spinal muscular atrophy X-linked 2
    Michelle Curley, Flávia A. Graça, Anna Stephan, Wei Wang, Vishwajeeth Pagala, Yong‐Dong Wang, Anthony A. High, Fabio Demontis · 2026 · Disease Models & Mechanisms
  7. Network Medicine Approach Unravels Endophenotype Signature in Alzheimer’s Disease through Large-Scale Comparative Proteomics Analysis: Vascular Dysfunction as a Prime Example
    Zhao Dai, Xiaocong Pang, Nan Chen, Xiude Fan, Wei Liu, Jinman Liu, Zhuang Chen, Shuhuan Fang, Chuipu Cai, Jiansong Fang · 2024 · Journal of Chemical Information and Modeling
  8. Molecular insights into the unique properties of the blood‐circulating proteasome
    Yegor Leushkin, David Morgenstern, Shifra Ben‐Dor, Rebecca Haffner‐Krausz, Katharina I. Zittlau, Gili Ben‐Nissan, Michal Sharon · 2025 · Journal of Extracellular Biology
  9. Cognitive decline in older adults with type 2 diabetes: Unraveling site-specific glycoproteomic alterations
    Yishai Levin, Nili Tickotsky, David Morgenstern, Hila Wolf-Levy, Barak Markus, Itzik Cooper, Anat Reiner Benaim, Jaime Uribarri, Ron Unger, Aron S. Buchman et al. · 2025 · PLoS ONE
  10. Facteurs de risque de la maladie d’Alzheimer et des maladies apparentées : approche parcours de vie
    Archana Singh‐Manoux, Sèverine Sabia · 2020 · Bulletin de l Académie Nationale de Médecine
  11. Integrating Proteomics for Facilitating Drug Identification and Repurposing During an Emerging Virus Pandemic
    Brayden G. Schindell, Meagan Allardice, Sandhini Lockman, Jason Kindrachuk · 2020 · ACS Infectious Diseases
  12. Identifying Sex-Specific Serum Patterns of Alzheimer’s Mice through Deep TMT Profiling and a Concentration-Dependent Concatenation Strategy
    Kaushik Kumar Dey, Jay M. Yarbro, Danting Liu, Xian Han, Zhen Wang, Yun Jiao, Zhiping Wu, Shu Yang, Dong Geun Lee, Abhijit Dasgupta et al. · 2023 · Journal of Proteome Research
  13. Intermolecular proteolytic processing of SPRING and Site-1-protease regulate SREBP signaling
    Hendrix, Sebastian, Tan, Josephine M.E., Ndoj, Klevis, Valiloo, Masoud, Zijlstra, Lobke F., Ottenhoff, Roelof, Seidah, Nabil G., Loregger, Anke, Zelcer, Noam · 2023
  14. Plasma Fractionation and Mixture Improves Coverage in Proteomic Analysis
    Ting Liu, Han Chen, Yuning Song, Xiang Ye, Dan Wang, Qiuhong Zhang, Huiru Liu, Jiaojiao Sha, Liang Du, Shanyu Qi et al. · 2025 · Journal of Proteome Research
  15. Integrated Structural and Glycoproteomic Profiling Reveals Protein Conformational Remodeling and Biomarkers Across Alzheimer’s Disease Progression
    Haiyan Lu, Ching-Yuan Yang, Hua Zhang, Xudong Shi, Penghsuan Huang, Peng-Kai Liu, Zicong Wang, Sanjay Asthana, Cynthia M. Carlsson, Ozioma C. Okonkwo et al. · 2026 · ACS Central Science
  16. Current and emerging biomarkers of cognitive dysfunction in aging dogs: A systematic review
    Luca Ciurli, Valentina Gazzano, Francesca Cecchi, Claudia Curadi, Angelo Gazzano · 2026 · Journal of Veterinary Behavior
  17. Liquid chromatography in proteomics research
    Engin Koçak, Cemil Can Eylem, Emirhan Nemutlu · 2023 · Elsevier eBooks
  18. Bridging Health Disparity Gaps in Alzheimer’s Disease among Marginalized Populations: Clinical Proteomics as a Case Study
    Henry A. Adeola, Renã A. S. Robinson · 2025 · ACS Bio & Med Chem Au
  19. Myokines, Measurement, and Technical Considerations
    Craig R. G. Willis, Colleen S. Deane, Timothy Etheridge · 2023 · Neuromethods
  20. Analytical methods in the detection of proteins and peptides in tissue fluids and homogenates
    Shweta Jain, Pushpendra Kumar, Mudit Kumar, Ankur Vaidya · 2023 · Elsevier eBooks
  21. Additional file 7 of Acute depletion of CTCF rewires genome-wide chromatin accessibility
    Beisi Xu, Hong Wang, Shaela Wright, Judith W. Hyle, Yang Zhang, Ying Shao, Niu, Mingming, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel et al. · 2021 · Figshare
  22. Additional file 6 of Acute depletion of CTCF rewires genome-wide chromatin accessibility
    Beisi Xu, Hong Wang, Shaela Wright, Judith W. Hyle, Yang Zhang, Ying Shao, Niu, Mingming, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel et al. · 2021 · Figshare
  23. Additional file 2 of Acute depletion of CTCF rewires genome-wide chromatin accessibility
    Beisi Xu, Hong Wang, Shaela Wright, Judith W. Hyle, Yang Zhang, Ying Shao, Niu, Mingming, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel et al. · 2021 · Figshare
  24. Additional file 5 of Acute depletion of CTCF rewires genome-wide chromatin accessibility
    Beisi Xu, Hong Wang, Shaela Wright, Judith W. Hyle, Yang Zhang, Ying Shao, Niu, Mingming, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel et al. · 2021 · Figshare
  25. Additional file 1 of Proteomic landscape of Alzheimer’s Disease: novel insights into pathogenesis and biomarker discovery
    Bai, Bing, David Vanderwall, Yuxin Li, Xusheng Wang, Suresh Poudel, Hong Wang, Dey, Kaushik Kumar, Ping‐Chung Chen, Ka Yang, Junmin Peng · 2021 · Figshare
  26. Additional file 8 of Acute depletion of CTCF rewires genome-wide chromatin accessibility
    Beisi Xu, Hong Wang, Shaela Wright, Judith W. Hyle, Yang Zhang, Ying Shao, Niu, Mingming, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel et al. · 2021 · Figshare
  27. Additional file 4 of Acute depletion of CTCF rewires genome-wide chromatin accessibility
    Beisi Xu, Hong Wang, Shaela Wright, Judith W. Hyle, Yang Zhang, Ying Shao, Niu, Mingming, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel et al. · 2021 · Figshare
  28. Additional file 3 of Acute depletion of CTCF rewires genome-wide chromatin accessibility
    Beisi Xu, Hong Wang, Shaela Wright, Judith W. Hyle, Yang Zhang, Ying Shao, Niu, Mingming, Yiping Fan, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel et al. · 2021 · Figshare
  29. General considerations when dealing with biological fluid samples
    Jeffrey W. Guthrie, Joanna Siódmiak, Magdalena Krintus · 2024 · Elsevier eBooks
  30. Selected Ion Extraction of Peptides with Heavy Isotopes and Hydrogen Loss Reduces the Type II Error in Plasma Proteomics
    Jaimie Dufresne, Zhuo Zhen Chen, Pallvi Sehajpal, Peter Bowden, Ja‐an Annie Ho, Cheng‐Chih Hsu, John G. Marshall · 2025 · ACS Omega
  31. Proteomics for Novel Biomarker and Drug Target Discovery in Alzheimer Disease
    Huiming Zhu, Minqi Cai, Dezhu Chen, Jiaojiao Sha, Liang Du, Yiqiang Chen, Siyuan Liu, Qian Zheng, Xuefei Wei, Bing Bai · 2025 · Springer eBooks
  32. CAT-APP: Contamination Analysis and Tempering—An Automated Online Platform for Plasma Proteomics with Data Rescuing Capabilities
    Mingming Niu, Dong Zhang, Zhiwei Zhou, Jiaqi Zhang, Rong Zhang, Long Shen, Hong Wang · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  33. Tissue Mild Extraction Enriches Membrane, Cytoplasmic, and Secreted Proteomes for Biomarker Discovery
    Liangjia Du, Qianqian Hu, Jiaojiao Sha, Zijin Geng, Shanyu Qi, Ting Liu, Huimin Zhu, Dezhu Chen, Minqi Cai, Yiqiang Chen et al. · 2025 · Journal of Proteome Research
  34. Involvement of dimethylarginine dimethylaminohydrolase type 1 (DDAH1) in addiction and social stress phenotypes: Insights from proteomic, metabolomic and functional studies
    Miroslav N. Nenov, Lisa A. Briand · 2025 · Progress in Neuro-Psychopharmacology and Biological Psychiatry
  35. Additional file 9 of Acute depletion of CTCF rewires genome-wide chromatin accessibility
    Xu, Beisi, Wang, Hong, Shaela Wright, Judith W. Hyle, Zhang, Yang, Shao, Ying, Mingming Niu, Fan, Yiping, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel et al. · 2021 · Figshare
  36. Additional file 2 of Change in the plasma proteome associated with canine cognitive dysfunction syndrome (CCDS) in Thailand
    Sataporn Phochantachinda, Boonrat Chantong, Onrapak Reamtong, Duangthip Chatchaisak · 2021 · Figshare
  37. Additional file 1 of Acute depletion of CTCF rewires genome-wide chromatin accessibility
    Xu, Beisi, Wang, Hong, Shaela Wright, Judith W. Hyle, Zhang, Yang, Shao, Ying, Niu, Mingming, Fan, Yiping, Wojciech Rosikiewicz, Mohamed Nadhir Djekidel et al. · 2021 · Figshare
  38. Additional file 1 of Change in the plasma proteome associated with canine cognitive dysfunction syndrome (CCDS) in Thailand
    Sataporn Phochantachinda, Boonrat Chantong, Onrapak Reamtong, Duangthip Chatchaisak · 2021 · Figshare
  39. Additional file 4 of Change in the plasma proteome associated with canine cognitive dysfunction syndrome (CCDS) in Thailand
    Sataporn Phochantachinda, Boonrat Chantong, Onrapak Reamtong, Duangthip Chatchaisak · 2021 · Figshare
  40. Bionano Interface Optimization for Rational Lateral Flow Assay Development
    Chris Sadler, Maya Miller, Kevion K. Darmawan, Jan P Sandler, Ho-Cheung Ng, André Shamsabadi, Adam Creamer, Carol V. Robinson, Irene Yarovsky, Molly M. Stevens · 2026 · ACS Nano
  41. Impact of single freeze-thaw cycles on human serum proteins: Implications for mass spectrometry biomarker validation
    Thorben Sauer, Martina Oberländer, Regina Maushagen, Helene Sophia Radloff, Ruediger Braun, Kim C. Honselmann, Ulrich F. Wellner, Jens Habermann, Claudia Benecke, Tobias Keck et al. · 2026 · iScience
  42. Silent clues in blood: Proteomic approach for Alzheimer’s disease
    Adriele Rebeca Vieira da Silva, Renata Santos Vieira da Conceição, Carla Mariana da Silva Medeiros, Michely da Silva Sousa, Jemmyson Romário de Jesus, Cícero Alves Lopes Júnior · 2026 · International review of neurobiology
  43. Serum Proteoglycan Alterations Associated with Cardiovascular Risk in Pb-Battery Recycling Workers Using Exploratory Proteomics and Independent ELISA Validation
    Kartikey Matte, Shubhangi Pingle, Rajani Tumane, Manjula Kannasandra Ramaiah, Kalahasthi Ravibabu · 2026 · Cardiovascular Toxicology