The DOI matches its Crossref record; 57 of the 57 references it cites were found in a registry or an index.
Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing
Open accessAbstract
Advancing crop genomics requires efficient genetic systems enabled by high-quality personalized genome assemblies. Here, we introduce RagTag, a toolset for automating assembly scaffolding and patching, and we establish chromosome-scale reference genomes for the widely used tomato genotype M82 along with Sweet-100, a new rapid-cycling genotype that we developed to accelerate functional genomics and genome editing in tomato. This work outlines strategies to rapidly expand genetic systems and genomic resources in other plant species.
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Cited by
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Self-citationThe vast majority of somatic mutations in plants are layer-specific
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Independent expansion, selection, and hypervariability of the TBC1D3 gene family in humans
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Metadata
- Authors
- Alonge, M., Lebeigle, L., Kirsche, M., Jenike, K., Ou, S., Aganezov, S., Wang, X., Lippman, Z. B., Schatz, M. C., & Soyk, S.
- Venue
- Genome Biology
- Published
- 2022-12-15
- Volume
- 23
- Issue
- 1
- Pages
- 258-258
- ISSN
- 1465-6906 (ISSN-L)
- 1474-760X
- OpenAlex
- W4311928790
- Cited by
- 992
- References
- 57
- FWCI
- 51.10
- Type
- journal article
- Language
- en
- Open access
- gold
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- Alonge, M., Lebeigle, L., Kirsche, M., Jenike, K., Ou, S., Aganezov, S., Wang, X., Lippman, Z. B., Schatz, M. C., & Soyk, S. (2022). Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing. Genome Biology. https://doi.org/10.1186/s13059-022-02823-7
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