Cited by 175

The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.

Atg9A trafficking through the recycling endosomes is required for autophagosome formation

Imai, Kenta, Hao, Feike, Fujita, Naonobu, Tsuji, Yasuhiro, Oe, Yukako, Araki, Yasuhiro, Hamasaki, Maho, Noda, Takeshi, Yoshimori, Tamotsu·2016·Journal of Cell Science

Abstract

Autophagy is an intracellular degradation pathway conserved in eukaryotes. Among core autophagy-related (Atg) proteins, mammalian Atg9A is the sole multi-spanning transmembrane protein, and both of its N- and C-terminal domains are exposed to the cytoplasm. It is known that Atg9A travels through the trans-Golgi network (TGN) and the endosomal system under nutrient-rich conditions, and transiently localizes to the autophagosome upon autophagy induction. However, the significance of Atg9A trafficking for autophagosome formation remains elusive. Here, we identified sorting motifs in the N-terminal cytosolic stretch of Atg9A that interact with the adaptor protein AP-2. Atg9A with mutations in the sorting motifs could not execute autophagy and was abnormally accumulated at the recycling endosomes. The combination of defects in autophagy and Atg9A accumulation in the recycling endosomes was also found upon the knockdown of TRAPPC8, a specific subunit of the TRAPPIII complex. These results show directly that the trafficking of Atg9A through the recycling endosomes is an essential step for autophagosome formation.

Overview

Integrity signals

Registry

Crossref · 10.1242/jcs.196196

Cites

4 of 4 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • In Arabidopsis and some mammalian cells, essentially all ATG5 and ATG12 proteins exist in the conjugated form, and expression levels do not change at least during short-term starvation.

    “In Arabidopsis and some mammalian cells it appears that essentially all of the ATG5 and ATG12 proteins exist in the conjugated form, and the expression levels do not change, at least during short-term starvation [291, 808, 809, 811].”

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 31

  1. Barlowe, 2003, Signals for COPII-dependent export from the ER: what's the ticket out?, Trends Cell Biol., 13, 295, 10.1016/S0962-8924(03)00082-5 · DOI
  2. Behrends, 2010, Network organization of the human autophagy system, Nature, 466, 68, 10.1038/nature09204 · DOI · Paper page
  3. Birmingham, 2006, Autophagy controls salmonella infection in response to damage to the salmonella-containing vacuole, J. Biol. Chem., 281, 11374, 10.1074/jbc.M509157200 · DOI · Paper page
  4. Bonifacino, 2003, Signals for sorting of transmembrane proteins to endosomes and lysosomes, Annu. Rev. Biochem., 72, 395, 10.1146/annurev.biochem.72.121801.161800 · DOI · Paper page
  5. Carlos Martín Zoppino, 2010, Autophagosome formation depends on the small GTPase Rab1 and functional ER exit sites, Traffic, 11, 1246, 10.1111/j.1600-0854.2010.01086.x · DOI
  6. Fujita, 2013, Recruitment of the autophagic machinery to endosomes during infection is mediated by ubiquitin, J. Cell Biol., 203, 115, 10.1083/jcb.201304188 · DOI
  7. Guo, 2012, AP1 is essential for generation of autophagosomes from the trans-Golgi network, J. Cell Sci., 125, 1706, 10.1242/jcs.093203 · DOI
  8. Itoh, 2008, Golgi-resident Small GTPase Rab33B Interacts with Atg16L and Modulates Autophagosome Formation, Mol. Biol. Cell, 19, 2916, 10.1091/mbc.E07-12-1231 · DOI
  9. Kageyama, 2011, The LC3 recruitment mechanism is separate from Atg9L1-dependent membrane formation in the autophagic response against Salmonella, Mol. Biol. Cell, 22, 2290, 10.1091/mbc.E10-11-0893 · DOI · Paper page
  10. Kawabata, 2016, Beyond starvation: an update on the autophagic machinery and its functions, J. Mol. Cell. Cardiol., 95, 2, 10.1016/j.yjmcc.2015.12.005 · DOI
  11. Knævelsrud, 2013, Membrane remodeling by the PX-BAR protein SNX18 promotes autophagosome formation, J. Cell Biol., 202, 331, 10.1083/jcb.201205129 · DOI
  12. Köchl, 2006, Microtubules Facilitate Autophagosome Formation and Fusion of Autophagosomes with Endosomes, Traffic, 7, 129, 10.1111/j.1600-0854.2005.00368.x · DOI
  13. Lamb, 2015, TBC1D14 regulates autophagy via the TRAPP complex and ATG9 traffic, EMBO J., 35, 281, 10.15252/embj.201592695 · DOI
  14. Longatti, 2012, TBC1D14 regulates autophagosome formation via Rab11- and ULK1-positive recycling endosomes, J. Cell Biol., 197, 659, 10.1083/jcb.201111079 · DOI
  15. Lynch-Day, 2010, Trs85 directs a Ypt1 GEF, TRAPPIII, to the phagophore to promote autophagy, Proc. Natl. Acad. Sci. USA, 107, 7811, 10.1073/pnas.1000063107 · DOI
  16. Morita, 2000, Plat-E: an efficient and stable system for transient packaging of retroviruses, Gene Ther., 7, 1063, 10.1038/sj.gt.3301206 · DOI
  17. Nakatogawa, 2009, Dynamics and diversity in autophagy mechanisms: lessons from yeast, Nat. Rev. Mol. Cell Biol., 10, 458, 10.1038/nrm2708 · DOI
  18. Nishimura, 1997, A di-acidic signal required for selective export from the endoplasmic reticulum, Science, 277, 556, 10.1126/science.277.5325.556 · DOI
  19. Noda, 2000, Apg9p/Cvt7p is an integral membrane protein required for transport vesicle formation in the Cvt and autophagy pathways, J. Cell Biol., 148, 465, 10.1083/jcb.148.3.465 · DOI
  20. Orsi, 2012, Dynamic and transient interactions of Atg9 with autophagosomes, but not membrane integration, are required for autophagy, Mol. Biol. Cell, 23, 1860, 10.1091/mbc.E11-09-0746 · DOI
  21. Popovic, 2014, TBC1D5 and the AP2 complex regulate ATG9 trafficking and initiation of autophagy, EMBO Rep., 15, 392, 10.1002/embr.201337995 · DOI
  22. Puri, 2013, Diverse autophagosome membrane sources coalesce in recycling endosomes, Cell, 154, 1285, 10.1016/j.cell.2013.08.044 · DOI
  23. Rohn, 2000, Bi-directional trafficking between the trans-Golgi network and the endosomal/lysosomal system, J. Cell Sci., 113, 2093, 10.1242/jcs.113.12.2093 · DOI
  24. Saitoh, 2003, TWEAK induces NF- B2 p100 processing and long lasting NF- kB activation, J. Biol. Chem., 278, 36005, 10.1074/jbc.M304266200 · DOI
  25. Saitoh, 2009, Atg9a controls dsDNA-driven dynamic translocation of STING and the innate immune response, Proc. Natl. Acad. Sci. USA, 106, 20842, 10.1073/pnas.0911267106 · DOI · Paper page
  26. Shibutani, 2014, A current perspective of autophagosome biogenesis, Cell Res., 24, 58, 10.1038/cr.2013.159 · DOI
  27. Shirahama-Noda, 2013, TRAPPIII is responsible for vesicular transport from early endosomes to Golgi, facilitating Atg9 cycling in autophagy, J. Cell Sci., 126, 4963, 10.1242/jcs.131318 · DOI
  28. Takahashi, 2011, Bif-1 regulates Atg9 trafficking by mediating the fission of Golgi membranes during autophagy, Autophagy, 7, 61, 10.4161/auto.7.1.14015 · DOI
  29. Webber, 2010, Coordinated regulation of autophagy by p38α MAPK through mAtg9 and p38IP, EMBO J., 29, 27, 10.1038/emboj.2009.321 · DOI
  30. Young, 2006, Starvation and ULK1-dependent cycling of mammalian Atg9 between the TGN and endosomes, J. Cell Sci., 119, 3888, 10.1242/jcs.03172 · DOI · Paper page
  31. Zavodszky, 2014, Mutation in VPS35 associated with Parkinson's disease impairs WASH complex association and inhibits autophagy, Nat. Commun., 5, 3828, 10.1038/ncomms4828 · DOI · Paper page

Cited by

Sorted by citations

Metadata

Authors
Imai, K., Hao, F., Fujita, N., Tsuji, Y., Oe, Y., Araki, Y., Hamasaki, M., Noda, T., & Yoshimori, T.
Affiliations
  • Graduate School of Frontier Bioscience, Osaka University 1 , 2-2 Yamadaoka, Suita, Osaka 565-0871 , Japan
  • Graduate School of Medicine, Osaka University 2 Department of Genetics , , 2-2 Yamadaoka, Suita, Osaka 565-0871 , Japan
  • Center for Frontier Oral Science, Graduate School of Dentistry, Osaka University 3 , 1-8 Yamadaoka, Suita, Osaka 565-0871 , Japan
Venue
Journal of Cell Science
Published
2016-10-15
Volume
129
Issue
20
Pages
3781-3791
ISSN
  • 1477-9137
  • 0021-9533
Cited by
175
References
4
Language
en
Funders
Ministry of Education, Culture, Sports, Science, and Technology (25111002 26111512 25293372)

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review