The DOI matches its Crossref record; 34 of the 34 references it cites were found in a registry or an index.
Disruption of rpmJ Encoding Ribosomal Protein L36 Decreases the Expression of secY Upstream of the spc Operon and Inhibits Protein Translocation in Escherichia coli
Abstract
The spc operon of Escherichia coli encodes 11 ribosomal proteins and SecY. The secY gene and downstream rpmJ encoding a ribosomal protein, L36, are located distal to the promoter of the spc operon. It has been suggested that the stability of SecY mRNA depends on rpmJ unless a rho-independent terminator is inserted immediately downstream of secY. Moreover, it has been suggested that RpmJ is dispensable for E. coli. We constructed rpmJ null strains, AY101 (DeltarpmJ::tetA) and AY201 (DeltarpmJ::cat), by replacing rpmJ with tetA, which encodes a membrane protein responsible for tetracycline-resistance, and cat, which encodes a cytoplasmic chloramphenicol acetyltransferase, respectively. Depletion of RpmJ did not inhibit protein synthesis, whereas the growth of AY101 was defective at high temperatures. The level of SecY mRNA decreased significantly in both disruptants even though the rho-independent terminator was inserted immediately downstream of secY. Some periplasmic proteins were missing in the disruptants with a concomitant increase in the amount of phage shock protein in the inner membrane. These phenotypes caused by the rpmJ null mutation were corrected by a plasmid carrying secY, but not by one carrying rpmJ.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“These genes are significantly down-regulated during stationary phase or when cells encounter stress conditions (Coenye and Vandamme, 2005; Ikegami et al., 2005; Starosta et al., 2014).”
From The Dynamic SecYEG Translocon (2021) · cites this paper as Ikegami et al., 2005
In the citing paper
“This is rather surprising, because secY is encoded in the spc operon together with genes for several ribosomal proteins (Lindahl et al., 1990; Ikegami et al., 2005).”
From The Dynamic SecYEG Translocon (2021) · cites this paper as Ikegami et al., 2005
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4
LAEMMLI, U. K. (1970) · Nature · doi:10.1038/227680a0 · Cited by 249,961
Casadaban, M. J. (1976) · Journal of Molecular Biology · doi:10.1016/0022-2836(76)90119-4 · Cited by 1,878
Mechanism of Assembly of the Outer Membrane of Salmonella typhimurium
Osborn, M., Gander, J. E., Parisi, E., et al. (1972) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)45127-2 · Cited by 1,570
High Resolution Structure of the Large Ribosomal Subunit from a Mesophilic Eubacterium
Harms, J. M., Schluenzen, F., Zarivach, R., Bashan, A., Gat, S., Agmon, I., Bartels, H., Franceschi, F. J., & Yonath, A. (2001) · Cell · doi:10.1016/s0092-8674(01)00546-3 · Cited by 899
Use of Bacteriophage λ Recombination Functions To Promote Gene Replacement in Escherichia coli
Murphy, K. C. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.8.2063-2071.1998 · Cited by 585
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12
Komine, Y., Adachi, T., Inokuchi, H., & Ozeki, H. (1990) · Journal of Molecular Biology · doi:10.1016/0022-2836(90)90224-a · Cited by 307
[41] Reconstitution of ribosomes from subribosomal components
Traub, P., Mizushima, S.-I., Lowry, C. V., & Nomura, M. (1971) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(71)20043-4 · Cited by 290
Hussain, M., Ichihara, S., & Mizushima, S.-I. (1980) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)85762-9 · Cited by 273
Cerretti, D. P., Dean, D. R., Davis, G. R., Bedwell, D. M., & Nomura, M. (1983) · Nucleic Acids Research · doi:10.1093/nar/11.9.2599 · Cited by 257
A temperature-sensitive mutant of E. coli exhibiting slow processing of exported proteins
Ito, K., Wittekind, M. G., Nomura, M., Shiba, K., Yura, T., Miura, A., & Nashimoto, H. (1983) · Cell · doi:10.1016/0092-8674(83)90065-x · Cited by 214
Cited by
Sorted by citations
Oswald, J., Njenga, R., Natriashvili, A., Sarmah, P., & Koch, H.-G. (2021) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2021.664241 · Cited by 88
Metadata
- Authors
- IKEGAMI, A., NISHIYAMA, K.-I., MATSUYAMA, S.-I., & TOKUDA, H.
- Affiliations
- Rikkyo University (JP)
- Institute for Quantitative Biosciences, The University of Tokyo (JP)
- Venue
- Bioscience, Biotechnology, and Biochemistry
- Publisher
- Informa UK Limited
- Published
- 2005-01
- Volume
- 69
- Issue
- 8
- Pages
- 1595-1602
- ISSN
- 0916-8451 (ISSN-L)
- 1347-6947
- OpenAlex
- W2008802977
- Cited by
- 30
- References
- 34
- Citations by year
- 2026: 6 · 2024: 1 · 2023: 3 · 2022: 1 · 2021: 2 · 2020: 2 · 2019: 2 · 2018: 1 · 2015: 1 · 2014: 3 · 2013: 1 · 2012: 1
- FWCI
- 0.72
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Bioscience Biotechnology and Biochemistry (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Ministry of Education, Culture, Sports, Science and Technology
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Heat shock proteins research
- Keywords
- SecY, Escherichia coli, mRNA stability, rho-independent terminator, protein translocation, periplasmic proteins, phage shock protein, gene expression regulation
- MeSH terms
- SEC Translocation Channels, Base Sequence, Genes, Bacterial, Molecular Sequence Data, Operon, Ribosomal Proteins, DNA Primers, Protein Transport, Escherichia coli Proteins
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review