The genetic architecture of parallel armor plate reduction in threespine sticklebacks.
Open accessAbstract
How many genetic changes control the evolution of new traits in natural populations? Are the same genetic changes seen in cases of parallel evolution? Despite long-standing interest in these questions, they have been difficult to address, particularly in vertebrates. We have analyzed the genetic basis of natural variation in three different aspects of the skeletal armor of threespine sticklebacks (Gasterosteus aculeatus): the pattern, number, and size of the bony lateral plates. A few chromosomal regions can account for variation in all three aspects of the lateral plates, with one major locus contributing to most of the variation in lateral plate pattern and number. Genetic mapping and allelic complementation experiments show that the same major locus is responsible for the parallel evolution of armor plate reduction in two widely separated populations. These results suggest that a small number of genetic changes can produce major skeletal alterations in natural populations and that the same major locus is used repeatedly when similar traits evolve in different locations.
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A QTL of lateral plate formation in a low-plated form of the stickleback indicates a significant modification of the reduced plate phenotype (eda locus) with modifying effects within and between loci affecting plate number and size.
“A quantitative trait analysis (QTL) of lateral plate formation in a low-plated form of the stickleback indicates a significant modification of the reduced plate phenotype (eda locus) with modifying effects within and between loci affecting plate number and size [53],[54].”
From Zebrafish eda and edar Mutants Reveal Conserved and Ancestral Roles of Ectodysplasin Signaling in Vertebrates (2008) · cites this paper as [54]
The Results and Discussion (QTL Architecture; page unavailable) identify a major LG 4 locus affecting plate morph, additional unlinked QTL modifying plate number, and QTL affecting plate size. They do not identify the major locus as Eda or establish modifying effects within that locus; the paper says further molecular work is needed to determine whether the LG 4 region contains one or multiple mutations. (LLM, conf=0.84)
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Research works printed but not linked: 20
- Banbura J A new model of lateral plate morph inheritance in the threespine stickleback, Gasterosteus aculeatus Theor Appl Genet 1994 88 871 876 24186191
- Baumgartner JV Bell MA Lateral plate morph variation in California populations of the threespine stickleback, Gasterosteus aculeatus Evolution 1984 38 665 674 28555988
- Bell MA Lateral plate polymorphism and ontogeny of the complete plate morph of threespine sticklebacks (Gasterosteus aculeatus) Evolution 1981 35 67 74 28563462
- Bell MA Foster SA The evolutionary biology of the threespine stickleback 1994 New York Oxford University Press 571 p
- Christians JK Bingham VK Oliver FK Heath TT Keightley PD Characterization of a QTL affecting skeletal size in mice Mamm Genome 2003 14 175 183 12647240
- Day T Pritchard J Schluter D Ecology and genetics of phenotypic plasticity: A comparison of two sticklebacks Evolution 1994 48 1723 1734 28568405
- Gompel N Carroll SB Genetic mechanisms and constraints governing the evolution of correlated traits in drosophilid flies Nature 2003 424 931 935 12931186
- Kingsley DM Zhu B Osoegawa K de Jong PJ Schein J New genomic tools for molecular studies of evolutionary change in sticklebacks Behaviour 2004 (in press)
- Majerus ME Mundy NI Mammalian melanism: Natural selection in black and white Trends Genet 2003 19 585 588 14585605
- Manly KF A Macintosh program for storage and analysis of experimental genetic mapping data Mamm Genome 1993 4 303 313 8318734
- Orr HA Betancourt AJ Haldane's sieve and adaptation from the standing genetic variation Genetics 2001 157 875 884 11157004 PMC1461537
- Orti G Bell MA Reimchen TE Meyer A Global survey of mitochondrial DNA sequences in the threespine stickleback: Evidence for recent migrations Evolution 1994 48 608 622 28568281
- Peichel CL Nereng KS Ohgi KA Cole BL Colosimo PF The genetic architecture of divergence between threespine stickleback species Nature 2001 414 901 905 11780061
- Reimchen TE Structural relationships between spines and lateral plates in threespine stickleback (Gasterosteus aculeatus) Evolution 1983 37 931 946 28563533
- Reimchen TE Injuries on stickleback from attacks by a toothed predator (Oncorhynchus) and implications for the evolution of lateral plates Evolution 1992 46 1224 1230 28564400
- Schluter D Clifford EA Nemethy M McKinnon JS Parallel evolution and inheritance of quantitative traits Am Nat 2004 (in press) 15266380
- Shapiro MD Marks ME Peichel CL Blackman BK Nereng KS Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks Nature 2004 (in press) 15085123
- Sucena E Delon I Jones I Payre F Stern DL Regulatory evolution of shavenbaby/ovo underlies multiple cases of morphological parallelism Nature 2003 424 935 938 12931187
- van Ooijen JW LOD significance thresholds for QTL analysis in experimental populations of diploid species Heredity 1999 83 613 624 10620035
- Ziuganov VV Genetics of osteal plate polymorphism and microevolution of threespine stickleback (Gasterosteus aculeatus L) Theor Appl Genet 1983 65 239 246 24263421
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Self-citation
- Authors
- Colosimo, P. F., Peichel, C. L., Nereng, K., Blackman, B. K., Shapiro, M. D., Schluter, D., & Kingsley, D. M.
- Affiliations
- Howard Hughes Medical Institute (US)
- Fred Hutch Cancer Center (US)
- University of British Columbia (CA)
- Corresponding author
- Kingsley, David M
- Venue
- PLoS Biology
- Publisher
- Public Library of Science (PLoS)
- Published
- 2004-03-30
- Volume
- 2
- Issue
- 5
- Pages
- e109
- ISSN
- 1544-9173 (ISSN-L)
- 1545-7885
- PMC
- PMC385219
- OpenAlex
- W2048619570
- Cited by
- 390
- References
- 0
- Citations by year
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- FWCI
- 10.74
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS Biology (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Howard Hughes Medical Institute
- National Institutes of Health
- Natural Sciences and Engineering Research Council of Canada
- National Human Genome Research Institute (P50HG002568)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Mapping and Diversity in Plants and Animals
- Physical Sciences › Mathematics › Geometry and Topology › Morphological variations and asymmetry
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Keywords
- parallel evolution, Gasterosteus aculeatus, lateral plates, genetic architecture, allelic complementation, gene mapping, natural variation, vertebrate evolution
- MeSH terms
- Alleles, Animals, Animal Structures, Chromosome Mapping, Crosses, Genetic, Biological Evolution, Female, Genetic Complementation Test, Genotype, Male, Models, Genetic, Molecular Sequence Data, Mutation, Phenotype, Selection, Genetic, Genetic Variation, Evolution, Molecular, Smegmamorpha, Quantitative Trait Loci
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