Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data

Cited by (139)

Items 101–139 of 139

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   Alla G. Gagarinova, Mohan Babu, Jack F. Greenblatt, Andrew Emili · 2012 · Journal of Visualized Experiments
2. High-Throughput Analyses and Curation of Protein Interactions in Yeast
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3. Organization Principles in Genetic Interaction Networks
   Christopher L. Jacobs, Daniel Segrè · 2012 · Advances in experimental medicine and biology
4. Network dynamics of the yeast methyltransferome
   Guri N. Giaever, Elena Lissina, Corey Nislow · 2019 · Microbial Cell
5. Genetic Networks
   Michael Costanzo, Anastasia Baryshnikova, Benjamin VanderSluis, Brenda Andrews, Chad L. Myers, Charles M. Boone · 2012 · Elsevier eBooks
6. From large-scale assays to mechanistic insights: computational analysis of interactions
   Ariel Jaimovich, Nir Friedman · 2010 · Current Opinion in Biotechnology
7. Dissecting the DNA damage response using functional genomics approaches in S. cerevisiae
   Marta Beata Davidson, Grant W. Brown · 2009 · DNA repair
8. Integrative structure determination of histones H3 and H4 using genetic interactions
   Ignacia Echeverria, Hannes Braberg, Nevan J. Krogan, Andrej Šali · 2022 · FEBS Journal
9. Protein-protein interactions are a major source of epistasis in genetic interaction networks
   Xavier Castellanos-Girouard, Adrian W.R. Serohijos, Stephen W. Michnick · 2026 · Nature Communications
10. An Algorithm to Mine Therapeutic Motifs for Cancer From Networks of Genetic Interactions
    Herty Liany, Yu Lin, Anand Devaprasath D. Jeyasekharan, Vaibhav Rajan · 2022 · IEEE Journal of Biomedical and Health Informatics
11. A Gaussian process-based definition reveals new and bona fide genetic interactions compared to a multiplicative model in the Gram-negative Escherichia coli
    Ashwani Kumar, Ali Hosseinnia, Alla G. Gagarinova, Sadhna Phanse, Sunyoung Kim, Khaled Ahmed Aly, Sandra Zilles, Mohan Babu · 2019 · Bioinformatics
12. Genome-Wide Scoring of Positive and Negative Epistasis through Decomposition of Quantitative Genetic Interaction Fitness Matrices
    Ville-Pekka Eronen, Rolf Lindén, Anna Lindroos, Mirella Kanerva, Tero A. Aittokallio · 2010 · PLoS ONE
13. Improved functional overview of protein complexes using inferred epistatic relationships
    Colm J. Ryan, Derek Greene, Aude Guénolé, Haico van Attikum, Nevan J. Krogan, Pádraig Cunningham, Gerard Cagney · 2011 · BMC Systems Biology
14. Understanding Cancer Progression Using Protein Interaction Networks
    Emre Güney, Rebeca Sanz Pamplona, Àngels Sierra, Baldomero Oliva · 2012 · Springer eBooks
15. Distinct configurations of protein complexes and biochemical pathways revealed by epistatic interaction network motifs
    Fergal Casey, Nevan J. Krogan, Denis C. Shields, Gerard Cagney · 2011 · BMC Systems Biology
16. From Driver Mutations To Driver Cancer Networks: Why We Need A New Paradigm
    Nikolaos Kalosidis, Aegli Mantsou, Nikolaos A. Papanikolaou · 2018 · Cancer Studies
17. Extracting Between-Pathway Models from E-MAP Interactions Using Expected Graph Compression
    David R. Kelley, Carl Kingsford · 2010 · Lecture notes in computer science
18. Monochromaticity in neutral evolutionary network models
    Arda Halu, Ginestra Bianconi A · 2012 · Physical Review E
19. Pervasive System Biology for Active Compound Valorization in Jatropha
    Nicolas Carels, Milena Magalhães, Carlyle Ribeiro Lima, Bir Bahadur, Márcio Argollo de Menezes · 2019 · Springer eBooks
20. Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut
    Mark D.M. Leiserson, Diana Tatar, Lenore Cowen, Benjamin J. Hescott · 2011 · Lecture notes in computer science
21. Predicting and explaining the impact of genetic disruptions and interactions on organismal viability
    Bader F. Al-Anzi, M. Khajah, S. Fakhraldeen · 2022 · Bioinform.
22. Protein-protein interaction is a major source of epistasis in genetic interaction networks
    Xavier Castellanos-Girouard, Adrian W.R. Serohijos, Stephen W. Michnick · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
23. Imputation of Quantitative Genetic Interactions in Epistatic MAPs by Interaction Propagation Matrix Completion
    Marinka Žitnik, Blaž Zupan · 2014 · Lecture notes in computer science
24. Az anyagcsere szerkezetének hatása a genetikai interakciókra és a genomszerveződésre
    Károly Kovács · 2013
25. Detection of protein complexes in protein interaction networks is improved through network-driven functional homogeneity analysis
    Haiying Wang, Huiru Zheng, Francisco J Azuaje · 2013 · IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
26. Genecentric
    Andrew Gallant, Mark D.M. Leiserson, Maxim Kachalov, Lenore Cowen, Benjamin J. Hescott · 2012 · ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB)
27. Methods for Identifying Pathway Epistasis and the Effects of Aging on the Human Methylome
    Gregory Hannum · 2012 · eScholarship (California Digital Library)
28. Predicting Cell Cycle Genes from E-MAP Profiles by Integrating Multiple Types of Data
    Lin Wang, Hou‐Wen Lin, Minping Qian, Fangting Li, Minghua Deng · 2010
29. On the interconnection of stable protein complexes: inter-complex hubs and their conservation in Saccharomyces cerevisiae and Homo sapiens networks
    Concettina Guerra · 2015 · International Journal of Bioinformatics Research and Applications
30. Exploring the Monochromatic Landscape in Yeast using Genetic Interactions and Known Processes Reveals the Importance of Protein Complexes
    Magali Michaut, Anastasia Baryshnikova, Michael Costanzo, Chad L. Myers, Brenda Andrews, Charles M. Boone, Gary D. Bader · 2010
31. Computational paradigms for analyzing genetic interaction networks
    Carles Pons, Michael Costanzo, Charles M. Boone, Chad L. Myers · 2015 · Cambridge University Press eBooks
32. Global Analysis of Kinase Interactions in Budding Yeast using Synthetic Dosage Lethality
    Sara Sharifpoor · 2012 · TSpace (University of Toronto)
33. Chromatin Reassembly following a DNA Double-Strand Break Repair: The Ctf18-complex and Ctf4 work in concert with H3K56 Acetylation
    Harshika Seepany · 2011 · TSpace (University of Toronto)
34. Analytical Approaches and Use Case on Network Interactions
    Hamza Hanafi, Badr Dine Rossi Hassani, M. Aït Kbir · 2020 · Lecture notes in intelligent transportation and infrastructure
35. Quantitative Genetic Screens for Mapping Bacterial Pathways and Functional Networks
    Alla G. Gagarinova, Ali Hosseinnia, Mohan Babu · 2021 · Methods in molecular biology
36. Exploring the function and evolution of proteins using domain families
    Adam James Reid · 2009 · OpenGrey (Institut de l'Information Scientifique et Technique)
37. Large scale data analysis for computational biochemistry
    Xuemei Luo · 2011
38. The relationship between interfacial overlap and functional divergence in the yeast protein-protein interaction network
    Yilun Han, Mohamed Ali Ghadie, Yu Xia · 2025 · Structure
39. Conservation of the genetic interaction network between two yeast species
    Carles Pons · 2025 · bioRxiv (Cold Spring Harbor Laboratory)