Evolution of Evolvability in Gene Regulatory Networks

Cited by (255)

Items 201–255 of 255

1. dynUGENE: an R package for uncertainty-aware gene regulatory network inference, simulation, and visualization
   Tianyu Lu, Anjali Silva · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
2. A virtue made of necessity: Is the increasing hierarchical complexity of sexual clades an inevitable outcome of their declining (macro)evolutionary potential?
   Ján Toman, Jaroslav Flegr A · 2018
3. Editorial: Digital evolution: Insights for biologists
   Miguel A. Fortuna, Guillaume Beslon, Charles Ofria · 2022 · Frontiers in Ecology and Evolution
4. A robust relationship between robustness and evolvability
   Nate B. Hardy · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
5. Computational Model of Flower Pattern Evolution Predicts Spontaneous Emergence of Boundary Cell Types Across Petal Epidermis
   Steven Oud, Maciej M. Zurowski, Pjotr L. van der Jagt, May T. S. Yeo, Joseph F. Walker, Edwige Moyroud, Renske M. A. Vroomans · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
6. Studying the evolution of bacterial micro-organisms by modeling and numerical simulation approaches
   Charles Rocabert · 2017 · theses.fr (ABES)
7. Investigating the evolution of diversity and complexity of Prokaryotic gene regulatory networks using in silico models
   Dafyd J. Jenkins · 2009 · University of Birmingham Institutional Research Archive (University of Birmingham)
8. C Library for Simulated Evolution of Biological Networks
   Deepak Chandran, Herbert M. Sauro · 2010 · arXiv (Cornell University)
9. Towards Application of the RBNK Model
   Larry Bull · 2013 · arXiv (Cornell University)
10. Gene regulatory networks estimation using uniting Bayesian subnetworks
    Jowhara Fahad Al-Shobaili, Aboubekeur Hamdi‐Cherif · 2014 · International Conference on Management of Emergent Digital EcoSystems (MEDES)
11. Extraction of gene regulatory networks from biological literature
    Karthik Tangirala, Doina Caragea · 2013 · IEEE International Conference on Computational Advances in Bio and Medical Sciences
12. The effects of population structure and the genotype-phenotype map on evolutionary dynamics
    Imre Derényi · 2009
13. Computational Modeling of the Regulatory Network Organizing the Wound Response in Arabidopsis thaliana
    Jan T. Kim, Anyela V. Camargo, Alessandra Devoto, Vincent Moulton, John Turner · 2012 · Artificial Life
14. Evolution of Boolean Networks: Contingency Versus Necessity in Biology
    Stephen J. Gilmore · 2012 · The Open Evolution Journal
15. System Identification methods for Reverse Engineering Gene Regulatory Networks
    Zhen Wang · 2010 · QSpace (Queen's University Library)
16. Towards a Integrated Evolutionary Model to Study Evolution of Evolution
    Charles Rocabert, Carole Knibbe, Guillaume Beslon · 2015 · HAL
17. Artificial life investigations into the evolutionary origins of representational cognition
    Solvi Arnold · 2015 · Nagoya University Repository (NAGOYA Repository)
18. From Cellular Components to Living Cells (and Back): Evolution of Function in Biological Networks
    Thorsten Lenser · 2011 · Common Library Network (Der Gemeinsame Bibliotheksverbund)
19. Nodulation gene networks in legumes
    Yupeng Li · 2015 · Plant and Animal Genome XXIV Conference
20. Modeling dynamic gene expression in STREPTOMYCES COELICOLOR: Comparing single and multi‐objective setups
    Spencer A. Thomas, Yaochu Jin, Emma Laing, Colin P. Sambrook Smith · 2016 · Wiley eBooks
21. Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression
    Berta Verd, Anton Crombach, Johannes Jaeger · 2016 · bioRxiv (Cold Spring Harbor Laboratory)
22. Neutral network assortativity shapes whether selective pressure promotes or hinders robustness
    David Shorten, Geoff Nitschke · 2016 · IEEE Symposium Series on Computational Intelligence (SSCI)
23. Backward evolution from gene network dynamics
    Merzu Kebede Belete, Daniel A. Charlebois, Gábor Balázsi · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
24. On attracting sets in artificial networks: cross activation
    Felix Sadyrbaev · 2018 · ITM Web of Conferences
25. Coupled fast and slow feedbacks lead to continual evolution: A general modeling approach
    Meike Tessa Wortel, Han Peters, Nils Chr. Stenseth · 2019 · arXiv (Cornell University)
26. Networks Describing Dynamical Systems
    Eduard Brokan, Felix Sadyrbaev · 2018 · Tatra Mountains Mathematical Publications
27. EvoEvo Deliverable 3.3
    Paulien Hogeweg, Guillaume Beslon · 2016
28. Darwin, the Modern Synthesis, and a New Biology
    John Steven Torday, William L. Miller · 2020 · Springer eBooks
29. Genomes
    Larry Bull · 2020 · Emergence, complexity and computation
30. BIO
    Günter P. Wagner · 2009 · Evolution & Development
31. On the Origin of Phenotypic Plasticity
    Takahiro Sakamoto, Hideki Innan · 2022 · Research Square
32. Evolvability and organismal architecture
    Stefano Tiso · 2024 · University of Groningen research database (University of Groningen / Centre for Information Technology)
33. Evolvability in the context of antibiotic resistance
    Timo J. B. van Eldijk · 2024 · University of Groningen research database (University of Groningen / Centre for Information Technology)
34. Body plan evolvability: The role of variability in gene regulatory networks
    Alexander V. Spirov, Мясникова Екатерина Марковна, David M. Holloway · 2024 · Journal of Bioinformatics and Computational Biology
35. Acclimation to high daily thermal amplitude converts a defense response regulator into susceptibility factor
    Marie Didelon, Justine Sucher, Pedro Carvalho‐Silva, Matilda Zaffuto, Adelin Barbacci, Sylvain Raffaele · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
36. From valleys to peaks: The role of evolvability in fitness landscape navigation.
    Priyanka Mehra, Arend Hintze · 2025 · PubMed Central
37. Switch From Soil to Plant Host Lifestyle Is Mediated by rpoS Mutations in Bacterial Endophyte
    Wiam Alsharif, Cristina Andrés‐Barrao, Sabiha Parween, Abdulrahman Hashim, Kirti Shekhawat, Michaël Abrouk, Jian You Wang, Ramona Marasco, Simon G. Krattinger, Daniele G. Daffonchio et al. · 2025 · Plant Cell & Environment
38. Identification of Key Genes and Pathways Associated with Frailty and Exercise Effects Using a Network and Evolutionary Approach
    Kyoko Naito, Hiromichi Akahori, Yoshinori Muto, Tomoyoshi Terada · 2025 · Genes
39. Fundamentals of graph theory and biological networks
    Edgar Ceh-Varela, Sarbagya Ratna Shakya · 2025 · Elsevier eBooks
40. Coevolution of learning ability and neuro-cognitive organization
    Solvi Arnold · 2010 · Utrecht University Repository (Utrecht University)
41. Additional file 1 of Genetic architecture of inter-specific and -generic grass hybrids by network analysis on multi-omics data
    Elesandro Bornhofen, Dario Fè, István Nagy, Ingo Lenk, Morten Greve, Thomas Didion, Christian Sig Jensen, Asp, Torben, Luc Janss · 2024 · Figshare
42. Additional file 2 of Genetic architecture of inter-specific and -generic grass hybrids by network analysis on multi-omics data
    Elesandro Bornhofen, Dario Fè, István Nagy, Ingo Lenk, Morten Greve, Thomas Didion, Christian Sig Jensen, Asp, Torben, Luc Janss · 2024 · Figshare
43. Additional file 3 of Genetic architecture of inter-specific and -generic grass hybrids by network analysis on multi-omics data
    Elesandro Bornhofen, Dario Fè, István Nagy, Ingo Lenk, Morten Greve, Thomas Didion, Christian Sig Jensen, Asp, Torben, Luc Janss · 2024 · Figshare
44. Contrasting temperature-induced gene network rewiring and isoform switching underlie relative thermal tolerance of coral species
    Federica Scucchia, Pierrick Harnay, Hollie M. Putnam · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
45. Étude de l'évolution réductive des génomes bactériens par expériences d'évolution in silico et analyses bioinformatiques
    Bérénice Batut · 2014 · theses.fr (ABES)
46. Origine evolutive de la complexite des systemes biologiques : Une etude par evolution experimentale in silico
    Vincent Liard · 2020
47. Ride the supercoiling : Evolution of supercoiling-mediated gene regulatory networks through genomic inversions
    Théotime Grohens · 2022 · theses.fr (ABES)
48. Theoretical and empirical study of the evolution of gene regulatory networks
    Apolline J. R. Petit · 2024 · theses.fr (ABES)
49. The robustness and evolvability of continuously varying traits
    Nate B. Hardy · 2026 · Evolution
50. Divergent Evolutionary Routes of Hypoxia Tolerance in Mangroves
    Yulin Weng, Taiping Chen, Lichun Zhou, Yuan‐Ye Zhang, Shen Yinjia, Qingshun Quinn Li · 2026 · Molecular Ecology
51. Hot off the Press: The Variability of Evolvability: Properties of Dynamic Fitness Landscapes Determine how Phenotypic Variability Evolves
    Csenge Petak, L. Frati, Renske M. A. Vroomans, Melissa H. Pespeni, Nick Cheney · 2026 · Genetic and Evolutionary Computation Conference Companion (GECCO Companion)
52. Insights into Genotype-Phenotype Mapping and Evolvability: A Perspective of Neutral Evolution
    Shaojie Deng · 2026 · SSRN Electronic Journal
53. The study of evolvability in gene regulatory networks
    Alger Jorritsma, Aaron Kiggen, Steven M. Van Belleghem, Pieter van den Berg · 2026 · Trends in Genetics
54. Regulatory mutation accumulation drives multi-trait phenotypic expansion in silver-adapted Escherichia coli
    Theresa D. Jones, Anuoluwapo Anele, Ishan J. Patel, Bryce J. Middleton, Leah M. Worrill, Jacquelle A. R. Joseph-Lainez, Brittany R. Sanders, Joseph L. Graves, Misty D. Thomas · 2026 · Microbiology Spectrum
55. COMPLEX NETWORK GROWING MODEL USING DOWNLINK MOTIFS
    Ahmad Al-Musawi · 2013 · VCU Scholars Compass (Virginia Commonwealth University)