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Correlating Transcriptional Networks to Papillary Renal Cell Carcinoma Survival: A Large-Scale Coexpression Analysis and Clinical Validation

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Correlation and Gene Co-Expression Networks

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Integrated genomics of susceptibility to alkylator-induced leukemia in mice

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Age-related but not longevity-related genes are found by weighted gene co-expression network analysis in the peripheral blood cells of humans

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Sex Differences in the Age of Genetics

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Unsupervised, Statistically Based Systems Biology Approach for Unraveling the Genetics of Complex Traits: A Demonstration with Ethanol Metabolism

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Interlinkages among County-Level Construction Indicators and Related Sustainable Development Goals in China

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Identification of transcriptional modules linked to the drought response of Brassica napus during seed development and their mitigation by early biotic stress

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Dynamical properties of gene regulatory networks involved in long-term potentiation

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Microenvironment of ruptured cerebral aneurysms discovered using data driven analysis of gene expression

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Gene Expression Signatures Identify Biologically Homogenous Subgroups of Grade 2 Meningiomas

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Integrated Weighted Correlation Network Analysis of Mouse Liver Gene Expression Data

Horvath, S. (2011) · Springer eBooks · doi:10.1007/978-1-4419-8819-5_12 · Cited by 6

Exploring gene expression signatures in preeclampsia and identifying hub genes through bioinformatic analysis

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Enhancing the Functional Content of Eukaryotic Protein Interaction Networks

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Network reconstruction based on synthetic data generated by a Monte Carlo approach

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Network Medicine: New Paradigm in the -Omics Era

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Stratification of Estrogen Receptor-Negative Breast Cancer Patients by Integrating the Somatic Mutations and Transcriptomic Data

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Potential Pathogenic Genes and Mechanism of Ankylosing Spondylitis: A Study Based on WGCNA and Bioinformatics Analysis

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Ensemble Clustering for Biological Datasets

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Detecting the Presence and Absence of Causal Relationships between Expression of Yeast Genes with Very Few Samples

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A Genetical Genomics Approach to Genome Scans Increases Power for QTL Mapping

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JGI Plant Gene Atlas: An updateable transcriptome resource to improve structural annotations and functional gene descriptions across the plant kingdomPreprint

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Clinical prognosis and related molecular features of hepatitis B-associated adolescent and young adult hepatocellular carcinoma

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Decoding plant‐induced transcriptomic variability and consistency in two related polyphagous mites differing in host ranges

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Local Dependency in Networks

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Inferring Gene Regulatory Networks from Genetical Genomics Data

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Applying network and genetic analysis to the potato metabolome

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Small networks of expressed genes in the whole blood and relationships to profiles in circulating metabolites provide insights in inter-individual variability of feed efficiency in growing pigs

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Processing Large-Scale, High-Dimension Genetic and Gene Expression Data

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A bioinformatic implementation of mutual information as a distance measure for identification of clusters of variables

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COL3A1, COL6A3, and SERPINH1 Are Related to Glucocorticoid-Induced Osteoporosis Occurrence According to Integrated Bioinformatics Analysis

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Identification potential epigenetic biomarkers of a human immunodeficiency virus/tuberculosis co‐infection based on weighted gene co‐expression network analysis

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Enhancing the functional content of protein interaction networksPreprint

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Systems Approaches for Pharmacogenetics and Pharmacogenomics

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A network medicine approach to psychiatric genetics

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Quantitative Trait Specific Differential Expression (qtDE)

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Genes and Pathways Contributing to Obesity

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Gene co-expression network analysis reveals common system-level properties of genes involved in tuberculosis across independent gene expression studies

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Using gene expression data to identify causal pathways between genotype and phenotype in a complex disease: application to Genetic Analysis Workshop 19

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Identification of functional gene modules by integrating multi-omics data and known molecular interactions

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Locational memory of macrovessel vascular cells is transcriptionally imprinted

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Systems Biology Approaches to Studying Diet x Genome Interactions

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Networks and Fundamental Concepts

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Discovery Approaches to UPR in Athero-Susceptible Endothelium In Vivo

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Detection of Quantitative Trait Associated Genes Using Cluster Analysis

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Identifying Functional Modules Using MST-Based Weighted Gene Co-Expression Networks

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Multi-layer Bundling as a New Approach for Determining Multi-scale Correlations Within a High-Dimensional Dataset

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Clustering Procedures and Module Detection

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Protein Interactions for Functional Genomics

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Discovery of Regulatory Mechanisms from Gene Expression Variation by eQTL Analysis

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Evaluating Whether a Module is Preserved in Another Network

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Integrative system genetic analysis reveals mRNA-lncRNA network associated with mouse spontaneous lung cancer susceptibility

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Functional homogeneity and specificity of topological modules in human proteome

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Understanding Tamoxifen Resistance of Breast Cancer Based on Integrative Bioinformatics Approaches

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DrGA: cancer driver gene analysis in a simpler manner

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Altered macronutrient composition and genetics influence the complex transcriptional network associated with adiposity in the Collaborative Cross

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GSGS: A Computational Framework to Reconstruct Signaling Pathways from Gene SetsPreprint

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Plasmid pHXY0908 confers ciprofloxacin heteroresistance to Salmonella enterica serovar typhimurium ATCC 14028 by regulating efflux pump gene expression

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Coexposure to polyvinyl chloride and acid rain mitigates cadmium toxicity in rice roots via a coordinated molecular response

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D_CDF test of negative log transformed p-values with application to genetic pathway analysis

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Large-Scale Regulatory Network Analysis from Microarray Data

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Weighted gene co-expression network analysis of microarray mRNA expression profiling in response to electroacupuncture

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Transcriptomic profiling identifies host-derived biomarker panels for assessing cerebral malaria

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VC‐PCR: A prediction method based on variable selection and clustering

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Effects of hybridization and gene flow on gene co-expression networks

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Linear covariance selection model via ℓ1-penalization

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TraitCorr as a workbench for correlating gene expression measurements with phenotypic data

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Colorectal Cancer and Its Molecular Subsystems: Construction, Interpretation, and Validation

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Estudo comparativo de redes gênicas de expressão de genes associados à diabetes mellitus tipo 2 (DM2) e genótipos de risco da doença

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Genetics and genomics of social behaviour in a chicken modelPreprint

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“Skull base meningiomas have a distinct immune landscape.”Preprint

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Bayesian Inference and Partial Identification in Multi-Treatment Causal Inference with Unobserved ConfoundingPreprint

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Artificial Neural Network Model Using Immune-infiltration Modules for Endometrial Receptivity Assessment of Implantation FailurePreprint

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Mechanisms underlying the atherosclerosis risk associated with apolipoprotein E isoforms in humans

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Model selection procedures for high dimensional genomic data

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Trends and Statistical Challenges in Genomewide Association Studies

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AN INTEGRATIVE COMPUTATIONAL FRAMEWORK FOR DEFINING ASTHMA ENDOTYPES

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Microarrays in Systems Neurobiology and Translational Neuroscience – From Genome Research to Clinical Applications

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Integrated Genomics Of Susceptiblity To Therapy-Related Leukemia

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Incorporating Knowledge of Topology Improves Reconstruction of Interaction Networks from Microarray Data

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Methods and Challenges of Identifying Biomolecular Relationships and Networks Associated with Complex Diseases/Phenotypes, and Their Application to Drug Treatments

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Opening up Rosetta

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Can pharmacology possibly have a role for bioinformatics?

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Association Study between Gene Expression and Multiple Relevant Phenotypes with Cluster Analysis

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The i...

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Weighted gene coexpression network analysis strategies applied to mouse weight

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