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Parallel Evolution of Auditory Genes for Echolocation in Bats and Toothed Whales
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Molecular convergence of echolocation between toothed whales and bats has usually been constrained to gene sequences.
“Alth ough m ole cu lar conv er g en ce of ech olo cation b etween to oth ed whales an d bats h a s be en studie d p reviously, i t has usua l ly be en const raine d to gene sequences ( Davies et al . 2012 ;S hen et a l. 2012 ;Liu et a l. 2014 ;Thom a s and Hahn 2015 ;Zou and Zhang 2015 ;Lambert et al. 2017 ;Marcovitz et al. 2019 )”
From Practical Guidance and Workflows for Identifying Fast Evolving Non-Coding Genomic Elements Using PhyloAcc (2024) · cites this paper as Shen et al. 2012
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Research works printed but not linked: 59
- Y Li, 2010, The hearing gene Prestin unites echolocating bats and whales., Curr Biol, 20, R55, 10.1016/j.cub.2009.11.042 · DOI
- Y Liu, 2010, Convergent sequence evolution between echolocating bats and dolphins., Curr Biol, 20, R53, 10.1016/j.cub.2009.11.058 · DOI
- Z Liu, 2011, Parallel evolution of KCNQ4 in echolocating bats., PLoS ONE, 6, e26618, 10.1371/journal.pone.0026618 · DOI
- JR Speakman, 1993, The evolution of echolocation for predation., Symp zool Soc Lond, 65, 39
- VS Arch, 2008, ‘Silent’ signals: selective forces acting on ultrasonic communication systems in terrestrial vertebrates., Anim Behav, 76, 1423, 10.1016/j.anbehav.2008.05.012 · DOI
- R Fettiplace, 2006, Active hair bundle movements in auditory hair cells., J Physiol, 576, 29, 10.1113/jphysiol.2006.115949 · DOI
- J Ashmore, 2010, The remarkable cochlear amplifier., Hear Res, 266, 1, 10.1016/j.heares.2010.05.001 · DOI
- J Zheng, 2000, Prestin is the motor protein of cochlear outer hair cells., Nature, 405, 149, 10.1038/35012009 · DOI
- G Li, 2008, The hearing gene Prestin reunites echolocating bats., Proc Natl Acad Sci U S A, 105, 13959, 10.1073/pnas.0802097105 · DOI
- Y Liu, 2012, The voltage-gated potassium channel subfamily KQT member 4 (KCNQ4) displays parallel evolution in echolocating bats., Mol Biol Evol, 29, 1441, 10.1093/molbev/msr310 · DOI
- P Dallos, 2008, Cochlear amplification, outer hair cells and prestin., Curr Opin Neurobiol, 18, 370, 10.1016/j.conb.2008.08.016 · DOI
- F Di Palma, 2001, Genomic structure, alternative splice forms and normal and mutant alleles of cadherin 23 (Cdh23)., Gene, 281, 31, 10.1016/S0378-1119(01)00761-2 · DOI
- H Bolz, 2001, Mutation of CDH23, encoding a new member of the cadherin gene family, causes Usher syndrome type 1D., Nat Genet, 27, 108, 10.1038/83667 · DOI
- KN Alagramam, 2001, The mouse Ames waltzer hearing-loss mutant is caused by mutation of Pcdh15, a novel protocadherin gene., Nat Genet, 27, 99, 10.1038/83837 · DOI
- ZM Ahmed, 2003, The molecular genetics of Usher syndrome., Clin Genet, 63, 431, 10.1034/j.1399-0004.2003.00109.x · DOI
- P Kazmierczak, 2007, Cadherin 23 and protocadherin 15 interact to form tip-link filaments in sensory hair cells., Nature, 449, 87, 10.1038/nature06091 · DOI
- J Siemens, 2004, Cadherin 23 is a component of the tip link in hair-cell stereocilia., Nature, 428, 950, 10.1038/nature02483 · DOI
- M Zak, 2011, The otoferlin interactome in neurosensory hair cells: significance for synaptic vesicle release and trans-Golgi network (Review)., Int J Mol Med, 28, 311
- S Yasunaga, 1999, A mutation in OTOF, encoding otoferlin, a FER-1-like protein, causes DFNB9, a nonsyndromic form of deafness., Nat Genet, 21, 363, 10.1038/7693 · DOI
- MJ Houseman, 2001, A novel mutation in a family with non-syndromic sensorineural hearing loss that disrupts the newly characterised OTOF long isoforms., J Med Genet, 38, E25, 10.1136/jmg.38.8.e25 · DOI
- R Varga, 2003, Non-syndromic recessive auditory neuropathy is the result of mutations in the otoferlin (OTOF) gene., J Med Genet, 40, 45, 10.1136/jmg.40.1.45 · DOI
- I Roux, 2006, Otoferlin, defective in a human deafness form, is essential for exocytosis at the auditory ribbon synapse., Cell, 127, 277, 10.1016/j.cell.2006.08.040 · DOI
- N Schug, 2006, Differential expression of otoferlin in brain, vestibular system, immature and mature cochlea of the rat., Eur J Neurosci, 24, 3372, 10.1111/j.1460-9568.2006.05225.x · DOI
- RR Fay, 2000, Evolution of hearing in vertebrates: the inner ears and processing., Hear Res, 149, 1, 10.1016/S0378-5955(00)00168-4 · DOI
- MD Seidman, 2002, Molecular mechanisms of age-related hearing loss., Ageing Res Rev, 1, 331, 10.1016/S1568-1637(02)00004-1 · DOI
- EC Teeling, 2005, A molecular phylogeny for bats illuminates biogeography and the fossil record., Science, 307, 580, 10.1126/science.1105113 · DOI
- WJ Murphy, 2001, Resolution of the early placental mammal radiation using Bayesian phylogenetics., Science, 294, 2348, 10.1126/science.1067179 · DOI
- WJ Murphy, 2001, Molecular phylogenetics and the origins of placental mammals., Nature, 409, 614, 10.1038/35054550 · DOI
- RA Adams, 2000, Ontogeny, Functional Ecology, and Evolution of Bats, 10.1017/CBO9780511541872 · DOI
- ZM Ahmed, 2006, The tip-link antigen, a protein associated with the transduction complex of sensory hair cells, is protocadherin-15., J Neurosci, 26, 7022, 10.1523/JNEUROSCI.1163-06.2006 · DOI
- F Di Palma, 2001, Mutations in Cdh23, encoding a new type of cadherin, cause stereocilia disorganization in waltzer, the mouse model for Usher syndrome type 1D., Nat Genet, 27, 103, 10.1038/83660 · DOI
- HH Zakon, 2002, Convergent evolution on the molecular level., Brain Behav Evol, 59, 250, 10.1159/000063562 · DOI
- TA Castoe, 2009, Evidence for an ancient adaptive episode of convergent molecular evolution., Proc Natl Acad Sci U S A, 106, 8986, 10.1073/pnas.0900233106 · DOI
- J Zhang, 2006, Parallel adaptive origins of digestive RNases in Asian and African leaf monkeys., Nat Genet, 38, 819, 10.1038/ng1812 · DOI
- S Yokoyama, 1998, The ‘five-sites’ rule and the evolution of red and green color vision in mammals., Mol Biol Evol, 15, 560, 10.1093/oxfordjournals.molbev.a025956 · DOI
- P Dallos, 2008, Prestin-based outer hair cell motility is necessary for mammalian cochlear amplification., Neuron, 58, 333, 10.1016/j.neuron.2008.02.028 · DOI
- MM Mellado Lagarde, 2008, Outer hair cell somatic, not hair bundle, motility is the basis of the cochlear amplifier., Nat Neurosci, 11, 746, 10.1038/nn.2129 · DOI
- HJ Kennedy, 2005, Force generation by mammalian hair bundles supports a role in cochlear amplification., Nature, 433, 880, 10.1038/nature03367 · DOI
- DK Chan, 2005, Ca2+ current-driven nonlinear amplification by the mammalian cochlea in vitro., Nat Neurosci, 8, 149, 10.1038/nn1385 · DOI
- JP Rauschecker, 2002, Sending sound to the brain., Science, 295, 1025, 10.1126/science.1067796 · DOI
- MC Liberman, 2002, Prestin is required for electromotility of the outer hair cell and for the cochlear amplifier., Nature, 419, 300, 10.1038/nature01059 · DOI
- JT Albert, 2007, Voltage-sensitive Prestin orthologue expressed in zebrafish hair cells., J Physiol, 580, 451, 10.1113/jphysiol.2007.127993 · DOI
- MA Cheatham, 2004, Cochlear function in Prestin knockout mice., J Physiol, 560, 821, 10.1113/jphysiol.2004.069559 · DOI
- JA Assad, 1992, An active motor model for adaptation by vertebrate hair cells., J Neurosci, 12, 3291, 10.1523/JNEUROSCI.12-09-03291.1992 · DOI
- J Howard, 1988, Compliance of the hair bundle associated with gating of mechanoelectrical transduction channels in the bullfrog's saccular hair cell., Neuron, 1, 189, 10.1016/0896-6273(88)90139-0 · DOI
- M Sotomayor, 2010, Structural determinants of cadherin-23 function in hearing and deafness., Neuron, 66, 85, 10.1016/j.neuron.2010.03.028 · DOI
- QY Zheng, 2005, Digenic inheritance of deafness caused by mutations in genes encoding cadherin 23 and protocadherin 15 in mice and humans., Hum Mol Genet, 14, 103, 10.1093/hmg/ddi010 · DOI
- CM Shanahan, 1994, High expression of genes for calcification-regulating proteins in human atherosclerotic plaques., J Clin Invest, 93, 2393, 10.1172/JCI117246 · DOI
- M Uguccioni, 1997, High expression of the chemokine receptor CCR3 in human blood basophils. Role in activation by eotaxin, MCP-4, and other chemokines., J Clin Invest, 100, 1137, 10.1172/JCI119624 · DOI
- JD Thompson, 1997, The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools., Nucleic Acids Res, 25, 4876, 10.1093/nar/25.24.4876 · DOI
- D Posada, 2008, jModelTest: phylogenetic model averaging., Mol Biol Evol, 25, 1253, 10.1093/molbev/msn083 · DOI
- D Posada, 2009, Selection of models of DNA evolution with jModelTest., Methods Mol Biol, 537, 93, 10.1007/978-1-59745-251-9_5 · DOI
- D Darriba, 2011, ProtTest 3: fast selection of best-fit models of protein evolution., Bioinformatics, 27, 1164, 10.1093/bioinformatics/btr088 · DOI
- JP Huelsenbeck, 2001, MRBAYES: Bayesian inference of phylogenetic trees., Bioinformatics, 17, 754, 10.1093/bioinformatics/17.8.754 · DOI · Paper page
- F Ronquist, 2003, MrBayes 3: Bayesian phylogenetic inference under mixed models., Bioinformatics, 19, 1572, 10.1093/bioinformatics/btg180 · DOI
- WH Li, 1985, A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes., Mol Biol Evol, 2, 150
- J Zhang, 1997, Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods., J Mol Evol, 44, S139, 10.1007/PL00000067 · DOI
- J Zhang, 1997, Detection of convergent and parallel evolution at the amino acid sequence level., Mol Biol Evol, 14, 527, 10.1093/oxfordjournals.molbev.a025789 · DOI
- Z Yang, 2007, PAML 4: phylogenetic analysis by maximum likelihood., Mol Biol Evol, 24, 1586, 10.1093/molbev/msm088 · DOI · Paper page
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Metadata
- Authors
- Shen, Y.-Y., Liang, L., Li, G.-S., Murphy, R. W., & Zhang, Y.-P.
- Venue
- PLoS Genetics
- Publisher
- Public Library of Science (PLoS)
- Published
- 2012-06-28
- Volume
- 8
- Issue
- 6
- Pages
- e1002788
- ISSN
- 1553-7404
- PMC
- PMC3386236
- Cited by
- 109
- References
- 0
- Language
- en
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