Wnt signaling regulates the lineage differentiation potential of mouse embryonic stem cells through Tcf3 down-regulation
Open accessAbstract
Canonical Wnt signaling plays a rate-limiting role in regulating self-renewal and differentiation in mouse embryonic stem cells (ESCs). We have previously shown that mutation in the Apc (adenomatous polyposis coli) tumor suppressor gene constitutively activates Wnt signaling in ESCs and inhibits their capacity to differentiate towards ecto-, meso-, and endodermal lineages. However, the underlying molecular and cellular mechanisms through which Wnt regulates lineage differentiation in mouse ESCs remain to date largely unknown. To this aim, we have derived and studied the gene expression profiles of several Apc-mutant ESC lines encoding for different levels of Wnt signaling activation. We found that down-regulation of Tcf3, a member of the Tcf/Lef family and a key player in the control of self-renewal and pluripotency, represents a specific and primary response to Wnt activation in ESCs. Accordingly, rescuing Tcf3 expression partially restored the neural defects observed in Apc-mutant ESCs, suggesting that Tcf3 down-regulation is a necessary step towards Wnt-mediated suppression of neural differentiation. We found that Tcf3 down-regulation in the context of constitutively active Wnt signaling does not result from promoter DNA methylation but is likely to be caused by a plethora of mechanisms at both the RNA and protein level as shown by the observed decrease in activating histone marks (H3K4me3 and H3-acetylation) and the upregulation of miR-211, a novel Wnt-regulated microRNA that targets Tcf3 and attenuates early neural differentiation in mouse ESCs. Our data show for the first time that Wnt signaling down-regulates Tcf3 expression, possibly at both the transcriptional and post-transcriptional levels, and thus highlight a novel mechanism through which Wnt signaling inhibits neuro-ectodermal lineage differentiation in mouse embryonic stem cells.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
These studies showed that abnormal catenin regulation induced dysregulated in vitro differentiation (and not proliferation), findings in keeping with the APC heterozygous human iPSC line.
“These studies showed that abnormal catenin regulation induced dysregulated in vitro differentiation (and not proliferation), findings in keeping with our APC heterozygous human iPSC line.”
From Modeling APC mutagenesis and familial adenomatous polyposis using human iPS cells (2018) · cites this paper as [35]
The Results section (pages not provided) reports that constitutive Wnt signaling prevented differentiation in a short-term in vitro assay and that Apc-mutant mouse ESCs showed defective neural differentiation in vitro. It does not establish the claim’s “and not proliferation” distinction; the Results also report that very high Wnt signaling could compromise colony formation and growth. (LLM, conf=0.85)
Experimental — accuracy not yet measuredA limited number of reports describe APC mutant lines, all done on mouse ESC expressing either hypomorphic mutant variants of APC or specifically overexpressing β-catenin APC mutations.
“This is supported by the existence of a limited number of reports describing APC mutant lines, which were all done on mouse ESC expressing either hypomorphic mutant variants of APC [35] or specifically overexpressing β-catenin APC mutations [36].”
From Modeling APC mutagenesis and familial adenomatous polyposis using human iPS cells (2018) · cites this paper as [35]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
The ground state of embryonic stem cell self-renewal
Ying, Q.-L., Wray, J., Nichols, J., Batlle-Morera, L., Doble, B., Woodgett, J., Cohen, P., & Smith, A. (2008) · Nature · doi:10.1038/nature06968 · Cited by 3,442 · see citing works
Conversion of embryonic stem cells into neuroectodermal precursors in adherent monoculture
Ying, Q.-L., Stavridis, M., Griffiths, D., Li, M., & Smith, A. (2003) · Nature Biotechnology · doi:10.1038/nbt780 · Cited by 1,504 · see citing works
A targeted chain-termination mutation in the mouse Apc gene results in multiple intestinal tumors.
Fodde, R., Edelmann, W., Yang, K., van Leeuwen, C., Carlson, C., Renault, B., Breukel, C., Alt, E., Lipkin, M., & Khan, P. M. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.19.8969 · Cited by 531 · see citing works
Self-citationBibel, M., Richter, J., Lacroix, E., & Barde, Y.-A. (2007) · Nature Protocols · doi:10.1038/nprot.2007.147 · Cited by 283 · see citing works
Flagged first, then by citations
Research works printed but not linked: 53
- [1]Kielman MF, Rindapaa M, Gaspar C, van Poppel N, Breukel C, et al (2002) Apc modulates embryonic stem-cell differentiation by controlling the dosage of beta-catenin signaling. Nat Genet 32: 594– 605. 12426568
- [2]Ogawa K, Nishinakamura R, Iwamatsu Y, Shimosato D, Niwa H (2006) Synergistic action of Wnt and LIF in maintaining pluripotency of mouse ES cells. Biochem Biophys Res Commun 343: 159– 166. 16530170
- [3]Sato N, Meijer L, Skaltsounis L, Greengard P, Brivanlou AH (2004) Maintenance of pluripotency in human and mouse embryonic stem cells through activation of Wnt signaling by a pharmacological GSK-3-specific inhibitor. Nat Med 10: 55– 63. 14702635
- [4]Berge DT, Kurek D, Blauwkamp T, Koole W, Maas A, et al (2011) Embryonic stem cells require Wnt proteins to prevent differentiation to epiblast stem cells. Nat Cell Biol 13: 1070– 1075. 21841791 PMC4157727
- [5]Yi F, Pereira L, Hoffman JA, Shy BR, Yuen CM, et al (2011) Opposing effects of Tcf3 and Tcf1 control Wnt stimulation of embryonic stem cell self-renewal. Nat Cell Biol 13: 762– 770. 21685894 PMC3129424
- [6]Wray J, Kalkan T, Gomez-Lopez S, Eckardt D, Cook A, et al (2011) Inhibition of glycogen synthase kinase-3 alleviates Tcf3 repression of the pluripotency network and increases embryonic stem cell resistance to differentiation. Nat Cell Biol 13: 838– 845. 21685889 PMC3160487
- [7]Rubinfeld B, Albert I, Porfiri E, Fiol C, Munemitsu S, et al (1996) Binding of GSK3beta to the APC-beta-catenin complex and regulation of complex assembly. Science 272: 1023– 1026. 8638126
- [8]Aberle H, Bauer A, Stappert J, Kispert A, Kemler R (1997) beta-catenin is a target for the ubiquitin-proteasome pathway. EMBO J 16: 3797– 3804. 9233789 PMC1170003
- [9]Hart MJ, de los Santos R, Albert IN, Rubinfeld B, Polakis P (1998) Downregulation of beta-catenin by human Axin and its association with the APC tumor suppressor, beta-catenin and GSK3 beta. Curr Biol 8: 573– 581. 9601641
- [10]Hoppler S, Kavanagh CL (2007) Wnt signaling: variety at the core. J Cell Sci 120: 385– 393. 17251379
- [11]Kim CH, Oda T, Itoh M, Jiang D, Artinger KB, et al (2000) Repressor activity of Headless/Tcf3 is essential for vertebrate head formation. Nature 407: 913– 916. 11057671 PMC4018833
- [12]Merrill BJ, Gat U, DasGupta R, Fuchs E (2001) Tcf3 and Lef1 regulate lineage differentiation of multipotent stem cells in skin. Genes Dev 15: 1688– 1705. 11445543 PMC312726
- [13]Nguyen H, Rendl M, Fuchs E (2006) Tcf3 governs stem cell features and represses cell fate determination in skin. Cell 127: 171– 183. 17018284
- [14]Pereira L, Yi F, Merrill BJ (2006) Repression of Nanog gene transcription by Tcf3 limits embryonic stem cell self-renewal. Mol Cell Biol 26: 7479– 7491. 16894029 PMC1636872
- [15]Dorsky RI, Itoh M, Moon RT, Chitnis A (2003) Two tcf3 genes cooperate to pattern the zebrafish brain. Development 130: 1937– 1947. 12642497
- [16]Houston DW, Kofron M, Resnik E, Langland R, Destree O, et al (2002) Repression of organizer genes in dorsal and ventral Xenopus cells mediated by maternal XTcf3. Development 129: 4015– 4025. 12163405
- [17]Tam WL, Lim CY, Han J, Zhang J, Ang YS, et al (2008) T-cell factor 3 regulates embryonic stem cell pluripotency and self-renewal by the transcriptional control of multiple lineage pathways. Stem Cells 26: 2019– 2031. 18467660 PMC2692055
- [18]Marson A, Levine SS, Cole MF, Frampton GM, Brambrink T, et al (2008) Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells. Cell 134: 521– 533. 18692474 PMC2586071
- [19]Cole MF, Johnstone SE, Newman JJ, Kagey MH, Young RA (2008) Tcf3 is an integral component of the core regulatory circuitry of embryonic stem cells. Genes Dev 22: 746– 755. 18347094 PMC2275428
- [20]Yi F, Pereira L, Merrill BJ (2008) Tcf3 functions as a steady-state limiter of transcriptional programs of mouse embryonic stem cell self-renewal. Stem Cells 26: 1951– 1960. 18483421 PMC2743928
- [21]Merrill BJ, Pasolli HA, Polak L, Rendl M, Garcia-Garcia MJ, et al (2004) Tcf3: a transcriptional regulator of axis induction in the early embryo. Development 131: 263– 274. 14668413
- [22]Guo G, Huang Y, Humphreys P, Wang X, Smith A (2011) A PiggyBac-based recessive screening method to identify pluripotency regulators. PLoS ONE 6: e18189 doi: 10.1371/journal.pone.0018189.. 21533166 PMC3078921 · DOI
- [23]Korinek V, Barker N, Willert K, Molenaar M, Roose J, et al (1998) Two members of the Tcf family implicated in Wnt/beta-catenin signaling during embryogenesis in the mouse. Mol Cell Biol 18: 1248– 1256. 9488439 PMC108837
- [24]Galceran J, Farinas I, Depew MJ, Clevers H, Grosschedl R (1999) Wnt3a-/–like phenotype and limb deficiency in Lef1(−/−)Tcf1(−/−) mice. Genes Dev 13: 709– 717. 10090727 PMC316557
- [25]Kelly KF, Ng DY, Jayakumaran G, Wood GA, Koide H, et al (2011) beta-catenin enhances Oct-4 activity and reinforces pluripotency through a TCF-independent mechanism. Cell Stem Cell 8: 214– 227. 21295277 PMC3465368
- [26]Smits R, Kielman MF, Breukel C, Zurcher C, Neufeld K, et al (1999) Apc1638T: a mouse model delineating critical domains of the adenomatous polyposis coli protein involved in tumorigenesis and development. Genes Dev 13: 1309– 1321. 10346819 PMC316713
- [28]Korinek V, Barker N, Morin PJ, van Wichen D, de Weger R, et al (1997) Constitutive transcriptional activation by a beta-catenin-Tcf complex in APC−/− colon carcinoma. Science 275: 1784– 1787. 9065401
- [31]Solberg N, Machon O, Krauss S (2012) Characterization and functional analysis of the 5′-flanking promoter region of the mouse Tcf3 gene. Mol Cell Biochem 360: 289– 299. 21935611
- [32]Spieker N, Peterson J, Reneman S, Destree O (2004) Analysis of the Tcf-3 promoter during early development of Xenopus. Dev Dyn 231: 510– 517. 15376330
- [33]Tay YM, Tam WL, Ang YS, Gaughwin PM, Yang H, et al (2008) MicroRNA-134 modulates the differentiation of mouse embryonic stem cells, where it causes post-transcriptional attenuation of Nanog and LRH1. Stem Cells 26: 17– 29. 17916804
- [34]Tay Y, Zhang J, Thomson AM, Lim B, Rigoutsos I (2008) MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation. Nature 455: 1124– 1128. 18806776
- [35]Xu N, Papagiannakopoulos T, Pan G, Thomson JA, Kosik KS (2009) MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells. Cell 137: 647– 658. 19409607
- [36]Zhong X, Li N, Liang S, Huang Q, Coukos G, et al (2010) Identification of microRNAs regulating reprogramming factor LIN28 in embryonic stem cells and cancer cells. J Biol Chem 285: 41961– 41971. 20947512 PMC3009922
- [37]Wu L, Belasco JG (2005) Micro-RNA regulation of the mammalian lin-28 gene during neuronal differentiation of embryonal carcinoma cells. Mol Cell Biol 25: 9198– 9208. 16227573 PMC1265813
- [38]Liu CG, Calin GA, Volinia S, Croce CM (2008) MicroRNA expression profiling using microarrays. Nat Protoc 3: 563– 578. 18388938
- [39]Betel D, Wilson M, Gabow A, Marks DS, Sander C (2008) The microRNA.org resource: targets and expression. Nucleic Acids Res 36: D149– 153. 18158296 PMC2238905
- [40]Friedman RC, Farh KK, Burge CB, Bartel DP (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res 19: 92– 105. 18955434 PMC2612969
- [41]Krek A, Grun D, Poy MN, Wolf R, Rosenberg L, et al (2005) Combinatorial microRNA target predictions. Nat Genet 37: 495– 500. 15806104
- [43]Watanabe K, Dai X (2011) A WNTer Revisit: New Faces of {beta}-Catenin and TCFs in Pluripotency. Sci Signal 4: pe41. 21971038
- [44]Lyashenko N, Winter M, Migliorini D, Biechele T, Moon RT, et al (2011) Differential requirement for the dual functions of beta-catenin in embryonic stem cell self-renewal and germ layer formation. Nat Cell Biol 13: 753– 761. 21685890 PMC3130149
- [45]Hikasa H, Ezan J, Itoh K, Li X, Klymkowsky MW, et al (2010) Regulation of TCF3 by Wnt-dependent phosphorylation during vertebrate axis specification. Dev Cell 19: 521– 532. 20951344 PMC2963175
- [46]Solberg N, Machon O, Machonova O, Krauss S (2012) Mouse Tcf3 represses canonical Wnt signaling by either competing for beta-catenin binding or through occupation of DNA-binding sites. Mol Cell Biochem 365: 53– 63. 22270545
- [47]Wu CI, Hoffman JA, Shy BR, Ford EM, Fuchs E, et al (2012) Function of Wnt/beta-catenin in counteracting Tcf3 repression through the Tcf3-beta-catenin interaction. Development 139: 2118– 2129. 22573616 PMC3357906
- [48]Suzuki H, Watkins DN, Jair KW, Schuebel KE, Markowitz SD, et al (2004) Epigenetic inactivation of SFRP genes allows constitutive WNT signaling in colorectal cancer. Nat Genet 36: 417– 422. 15034581
- [49]Jiang X, Tan J, Li J, Kivimae S, Yang X, et al (2008) DACT3 is an epigenetic regulator of Wnt/beta-catenin signaling in colorectal cancer and is a therapeutic target of histone modifications. Cancer Cell 13: 529– 541. 18538736 PMC2577847
- [50]Aguilera O, Fraga MF, Ballestar E, Paz MF, Herranz M, et al (2006) Epigenetic inactivation of the Wnt antagonist DICKKOPF-1 (DKK-1) gene in human colorectal cancer. Oncogene 25: 4116– 4121. 16491118
- [51]He B, Reguart N, You L, Mazieres J, Xu Z, et al (2005) Blockade of Wnt-1 signaling induces apoptosis in human colorectal cancer cells containing downstream mutations. Oncogene 24: 3054– 3058. 15735684
- [52]Cai C, Ashktorab H, Pang X, Zhao Y, Sha W, et al (2012) MicroRNA-211 expression promotes colorectal cancer cell growth in vitro and in vivo by targeting tumor suppressor CHD5. PLoS ONE 7: e29750 doi: 10.1371/journal.pone.0029750.. 22235338 PMC3250477 · DOI
- [53]Levy C, Khaled M, Iliopoulos D, Janas MM, Schubert S, et al (2010) Intronic miR-211 assumes the tumor suppressive function of its host gene in melanoma. Mol Cell 40: 841– 849. 21109473 PMC3004467
- [54]Mazar J, DeYoung K, Khaitan D, Meister E, Almodovar A, et al (2010) The regulation of miRNA-211 expression and its role in melanoma cell invasiveness. PLoS ONE 5: e13779 doi: 10.1371/journal.pone.0013779.. 21072171 PMC2967468 · DOI
- [55]Wang FE, Zhang C, Maminishkis A, Dong L, Zhi C, et al (2010) MicroRNA-204/211 alters epithelial physiology. FASEB J 24: 1552– 1571. 20056717 PMC3231816
- [56]Joyner AL, Sedivy JM (2000) Gene targeting: a practical approach. Oxford; New York: Oxford University Press. xviii, 293 p. p.
- [57]Li LC, Dahiya R (2002) MethPrimer: designing primers for methylation PCRs. Bioinformatics 18: 1427– 1431. 12424112
Cited by
Sorted by citations
Modeling APC mutagenesis and familial adenomatous polyposis using human iPS cells
Sommer, C. A., Capilla, A., Molina-Estevez, F. J., Gianotti-Sommer, A., Skvir, N., Caballero, I., Chowdhury, S., & Mostoslavsky, G. (2018) · PLOS ONE · doi:10.1371/journal.pone.0200657 · Cited by 39 · see citing works
“This is supported by the existence of a limited number of reports describing APC mutant lines, which were all done on mouse ESC expressing either hypomorphic mutant variants of APC [35] or specifically overexpressing β-catenin APC mutations [36].”
Background
- Authors
- Atlasi, Y., Noori, R., Gaspar, C., Franken, P., Sacchetti, A., Rafati, H., Mahmoudi, T., Decraene, C., Calin, G. A., Merrill, B. J., & Fodde, R.
- Affiliations
- Erasmus MC (NL)
- Centre National de la Recherche Scientifique (FR)
- University of Illinois Chicago (US)
- Corresponding author
- Fodde, Riccardo
- ORCID
- Venue
- PLoS Genetics
- Publisher
- Public Library of Science (PLoS)
- Published
- 2013-05-02
- Volume
- 9
- Issue
- 5
- Pages
- e1003424
- ISSN
- 1553-7390 (ISSN-L)
- 1553-7404
- PMC
- PMC3642041
- OpenAlex
- W2133656012
- Cited by
- 84
- References
- 4
- Citations by year
- 2026: 3 · 2025: 2 · 2024: 3 · 2023: 4 · 2022: 3 · 2021: 9 · 2020: 8 · 2019: 4 · 2018: 9 · 2017: 14 · 2016: 5 · 2015: 9 · 2014: 10 · 2013: 1
- FWCI
- 3.74
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS Genetics (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- EUR Research Repository (Erasmus University Rotterdam) (publishedVersion, other-oa)
- EUR Research Repository (Erasmus University Rotterdam) (submittedVersion, other-oa)
- RePub (Erasmus University Rotterdam) (submittedVersion, other-oa)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Figshare (submittedVersion, cc-by)
- Funders
- Laura and John Arnold Foundation
- National Institutes of Health
- University of Texas MD Anderson Cancer Center
- National Cancer Institute (R01CA128571)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Pluripotent Stem Cells Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Wnt/β-catenin signaling in development and cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Keywords
- Wnt signaling, mouse embryonic stem cells, TCF3, APC mutation, neuronal differentiation, lineage differentiation, histone modifications, H3K4me3, histone H3 acetylation, miR-211, post-transcriptional regulation, pluripotency, self-renewal
- MeSH terms
- Animals, Cell Differentiation, Mutation, Transcription, Genetic, Down-Regulation, Gene Expression Regulation, Developmental, Cell Lineage, DNA Methylation, Adenomatous Polyposis Coli Protein, Mice, Basic Helix-Loop-Helix Proteins, Basic Helix-Loop-Helix Transcription Factors, Embryonic Stem Cells, Wnt Signaling Pathway
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review