Detecting archaic introgression using an unadmixed outgroup

Skov, Laurits, Hui, Ruoyun, Shchur, Vladimir, Hobolth, Asger, Scally, Aylwyn, Schierup, Mikkel Heide, Durbin, Richard·2018·PLoS Genetics

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Items 101–125 of 125

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  2. Tracing the Neanderthal–Modern Human hybrid zone using paleogenomic data
    Lionel N. Di Santo, Claudio S. Quilodrán, Paola Cerrito, Mathias Currat · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  3. GAISHI: A Python Package for Detecting Ghost Introgression with Machine Learning
    Xin Huang, Josef Hackl, Harvinder Pawar, Martin Kuhlwilm · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  4. Introgression, hominin dispersal and megafaunal survival in Late Pleistocene Island Southeast Asia
    João C. Teixeira, Guy S. Jacobs, Chris B. Stringer, Jonathan Tuke, Georgi Hudjashov, Gludhug A. Purnomo, Herawati Sudoyo, Murray P. Cox, Raymond Tobler, CHRIS S. M. TURNEY et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  5. The Negative Impact of the Hominin’s DPP4 Gene Inherited from Neanderthals to Pandemic of COVID-19
    Sorush Niknamian · 2021 · Open Access Journal of Mycology & Mycological Sciences
  6. Faculty Opinions recommendation of Recovering signals of ghost archaic introgression in African populations.
    Ulf Pettersson · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  7. Faculty Opinions recommendation of Recovering signals of ghost archaic introgression in African populations.
    Paweł Stankiewicz · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  8. THE NEGATIVE IMPACT OF The HOMININ’s DPP4 GENE INHERITED from NEANDERTHALS to PANDEMIC of COVID-19
    Sorush Niknamian · 2021
  9. Ghost admixture in eastern gorillas
    Harvinder Pawar, Aigerim Rymbekova, Sebastián Cuadros-Espinoza, Xin Huang, Marc de Manuel, Tom van der Valk, Irene Lobón, Marina Álvarez-Estapé, Marc Haber, Olga Dolgova et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  10. Exploring adaptive introgression in modern human circadian rhythm genes
    Christopher Kendall, Amin Nooranikhojasteh, Guilherme Debortoli, Vinicius Cauê Furlan Roberto, Marla Mendes de Aquino, David R. Samson, Esteban Juan Parra, Bence Viola, Michael A. Schillaci · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  11. Human evolution: Tracing ancient journeys through Denisovan DNA
    Shigeki Nakagome · 2025 · Current Biology
  12. How Much Could We Trust the Inferred Neanderthal Segments?
    A. V. Ilina, Léo Planche, V. L. Shchur · 2025 · Lobachevskii Journal of Mathematics
  13. ArchIE2: A software package for robust inference of introgressed local ancestry
    Harold Z. Wang, Sriram Sankararaman · 2026 · Human Population Genetics and Genomics
  14. A Denisovan-derived Alu insertion in OCA2 contributes to pigmentation diversity in present-day Melanesians
    Kwondo Kim, Aaron Pfennig, Sabriya A. Syed, Nicholas L. Moskwa, Nélio Alessandro de Jesus Oliveira, Quynh-Mai Pham, Pille Hallast, Feyza Yilmaz, Justin A. McDonough, Heather Norton et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  15. Origines et conséquences des variants régulateurs chez l'humain
    Martin Silvert · 2019 · theses.fr (ABES)
  16. Intégrer des approches expérimentales et d’évolution moléculaire en génomique de la spéciation afin d’identifier les mécanismes impliqués dans la divergence entre bar atlantique et loup méditerranéen
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  17. WITHDRAWN: GhostHunter: A Multi-Test Framework for Detecting Ghost Introgression
    Margaret Wanjiku, Arun Sethuraman · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  18. ArchaicSeeker 3.0: A deep-learning framework for scalable, haplotype-resolved inference of archaic introgression
    Baonan Wang, Chang Lei, Huanyu Lin, 石少康, Xixian Ma, Weishun Zeng, Kai Yuan, Xumin Ni, Shuhua Xu · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  19. The reliability of inferred archaic segments
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  20. A Rarefaction Approach to Identify Local Introgression in a Three Population Tree
    T. C. Smith, Zachary A. Szpiech · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  21. Revisiting neanderthal ancestry: Evolutionary insights and biomedical relevance
    Siyuan Bu, Zhijun Zhang · 2026 · The Innovation Life
  22. Regulation of NAT1 activity in modern humans by a novel phosphorylation site
    Luise Fast, Mikel Lana Alberro, Eva Rakava, Richard Ågren, Stephan Riesenberg, Wieland Β. Huttner, Janet F. Kelso, Svante Pääbo, Hugo Zeberg · 2026 · Science Advances
  23. Scalable ARG-free Detection of Denisovan-mediated Superarchaic Introgression Reveals Heterogeneous Patterns across Populations
    Noel Powelson McAllister, Sebastian Zöllner, Xinjun Zhang · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  24. The receptor kinase NILR1 confers nematode resistance through developmental rather than canonical immune signaling
    Maximilian F. Euler, Seema Aslam, Stefan Neumann, Florian M. W. Grundler · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
  25. Ancient introgression drives wild boar expansion and phenotypic diversification of domestic pigs
    Jianhai Chen, Xiaoyong Du, Zhuqing Zheng, Neena Amatya Gorkhali, Changyi Xiao, Shilin Zhu, Jie Zhong, Luan Fu, Jingjin Li, Zhuofan Yan et al. · 2026 · Science