Detecting archaic introgression using an unadmixed outgroup
Skov, Laurits, Hui, Ruoyun, Shchur, Vladimir, Hobolth, Asger, Scally, Aylwyn, Schierup, Mikkel Heide, Durbin, Richard·2018·PLoS Genetics
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- Tracing the Neanderthal–Modern Human hybrid zone using paleogenomic dataLionel N. Di Santo, Claudio S. Quilodrán, Paola Cerrito, Mathias Currat · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- GAISHI: A Python Package for Detecting Ghost Introgression with Machine LearningXin Huang, Josef Hackl, Harvinder Pawar, Martin Kuhlwilm · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Introgression, hominin dispersal and megafaunal survival in Late Pleistocene Island Southeast AsiaJoão C. Teixeira, Guy S. Jacobs, Chris B. Stringer, Jonathan Tuke, Georgi Hudjashov, Gludhug A. Purnomo, Herawati Sudoyo, Murray P. Cox, Raymond Tobler, CHRIS S. M. TURNEY et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- The Negative Impact of the Hominin’s DPP4 Gene Inherited from Neanderthals to Pandemic of COVID-19Sorush Niknamian · 2021 · Open Access Journal of Mycology & Mycological Sciences
- Faculty Opinions recommendation of Recovering signals of ghost archaic introgression in African populations.Ulf Pettersson · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Faculty Opinions recommendation of Recovering signals of ghost archaic introgression in African populations.Paweł Stankiewicz · 2020 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- THE NEGATIVE IMPACT OF The HOMININ’s DPP4 GENE INHERITED from NEANDERTHALS to PANDEMIC of COVID-19Sorush Niknamian · 2021
- Ghost admixture in eastern gorillasHarvinder Pawar, Aigerim Rymbekova, Sebastián Cuadros-Espinoza, Xin Huang, Marc de Manuel, Tom van der Valk, Irene Lobón, Marina Álvarez-Estapé, Marc Haber, Olga Dolgova et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
- Exploring adaptive introgression in modern human circadian rhythm genesChristopher Kendall, Amin Nooranikhojasteh, Guilherme Debortoli, Vinicius Cauê Furlan Roberto, Marla Mendes de Aquino, David R. Samson, Esteban Juan Parra, Bence Viola, Michael A. Schillaci · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Human evolution: Tracing ancient journeys through Denisovan DNAShigeki Nakagome · 2025 · Current Biology
- How Much Could We Trust the Inferred Neanderthal Segments?A. V. Ilina, Léo Planche, V. L. Shchur · 2025 · Lobachevskii Journal of Mathematics
- ArchIE2: A software package for robust inference of introgressed local ancestryHarold Z. Wang, Sriram Sankararaman · 2026 · Human Population Genetics and Genomics
- A Denisovan-derived Alu insertion in OCA2 contributes to pigmentation diversity in present-day MelanesiansKwondo Kim, Aaron Pfennig, Sabriya A. Syed, Nicholas L. Moskwa, Nélio Alessandro de Jesus Oliveira, Quynh-Mai Pham, Pille Hallast, Feyza Yilmaz, Justin A. McDonough, Heather Norton et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Origines et conséquences des variants régulateurs chez l'humainMartin Silvert · 2019 · theses.fr (ABES)
- Intégrer des approches expérimentales et d’évolution moléculaire en génomique de la spéciation afin d’identifier les mécanismes impliqués dans la divergence entre bar atlantique et loup méditerranéenMaud Duranton · 2019 · theses.fr (ABES)
- WITHDRAWN: GhostHunter: A Multi-Test Framework for Detecting Ghost IntrogressionMargaret Wanjiku, Arun Sethuraman · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- ArchaicSeeker 3.0: A deep-learning framework for scalable, haplotype-resolved inference of archaic introgressionBaonan Wang, Chang Lei, Huanyu Lin, 石少康, Xixian Ma, Weishun Zeng, Kai Yuan, Xumin Ni, Shuhua Xu · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- The reliability of inferred archaic segmentsNancy Bird, Erin Walker, Garrett Hellenthal · 2026 · Human Population Genetics and Genomics
- A Rarefaction Approach to Identify Local Introgression in a Three Population TreeT. C. Smith, Zachary A. Szpiech · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Revisiting neanderthal ancestry: Evolutionary insights and biomedical relevanceSiyuan Bu, Zhijun Zhang · 2026 · The Innovation Life
- Regulation of NAT1 activity in modern humans by a novel phosphorylation siteLuise Fast, Mikel Lana Alberro, Eva Rakava, Richard Ågren, Stephan Riesenberg, Wieland Β. Huttner, Janet F. Kelso, Svante Pääbo, Hugo Zeberg · 2026 · Science Advances
- Scalable ARG-free Detection of Denisovan-mediated Superarchaic Introgression Reveals Heterogeneous Patterns across PopulationsNoel Powelson McAllister, Sebastian Zöllner, Xinjun Zhang · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- The receptor kinase NILR1 confers nematode resistance through developmental rather than canonical immune signalingMaximilian F. Euler, Seema Aslam, Stefan Neumann, Florian M. W. Grundler · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Ancient introgression drives wild boar expansion and phenotypic diversification of domestic pigsJianhai Chen, Xiaoyong Du, Zhuqing Zheng, Neena Amatya Gorkhali, Changyi Xiao, Shilin Zhu, Jie Zhong, Luan Fu, Jingjin Li, Zhuofan Yan et al. · 2026 · Science