Evaluation of Methods for the Extraction and Purification of DNA from the Human Microbiome

Yuan, Sanqing, Cohen, Dora B., Ravel, Jacques, Abdo, Zaid, Forney, Larry J.·2012·PLoS ONE
DOI 10.1371/journal.pone.0033865

Cited by (512)

Items 201–300 of 512

  1. Oligosaccharides Modulate Rotavirus-Associated Dysbiosis and TLR Gene Expression in Neonatal Rats
    Ignasi Azagra-Boronat, Malén Massot‐Cladera, Karen Knipping, Belinda van’t Land, Sebastian Tims, Bernd Stahl, Jan Knol, Johan Garssen, Àngels Franch, Margarida Castell et al. · 2019 · Cells
  2. Dehydrated CRISPR-mediated DNA analysis for visualized animal-borne virus sensing in the unprocessed blood sample
    Cheng Qian, Hui Wu, Ya Shi, Jian Feng Wu, Huan Chen · 2019 · Sensors and Actuators B Chemical
  3. Molecular ecological tools to decipher the role of our microbial mass in obesity
    Gerben D. A. Hermes, Erwin G. Zoetendal, Hauke Smidt · 2014 · Beneficial Microbes
  4. High throughput sequencing methods for microbiome profiling: application to food animal systems
    Sarah K. Highlander · 2012 · Animal Health Research Reviews
  5. A metagenomic approach to dissect the genetic composition of enterotypes in Han Chinese and two Muslim groups
    Jing Li, Ruiqing Fu, Yajun Yang, Hans‐Peter Horz, Yaqun Guan, Yan Lü, Haiyi Lou, Lei Tian, Shijie Zheng, Hongjiao Liu et al. · 2017 · Systematic and Applied Microbiology
  6. Improved Yield and Accuracy for DNA Extraction in Microbiome Studies with Variation in Microbial Biomass
    Amy Davis, Christina M. Kohler, Ramzi A. Alsallaq, Randall T. Hayden, Gabriela Maria Marón, Elisa B. Margolis · 2019 · BioTechniques
  7. Small to modest impact of social group on the gut microbiome of wild Costa Rican capuchins in a seasonal forest
    Joseph Daniel Orkin, Shasta E. Webb, Amanda Dawn Melin · 2019 · American Journal of Primatology
  8. An identification protocol for ESBL-producing Gram-negative bacteria bloodstream infections using a MinION nanopore sequencer
    Jun Sakai, Norihito Tarumoto, Masahiro Kodana, Sae Ashikawa, Kazuo Imai, Toru Kawamura, Kenji Ikebuchi, Takashi Murakami, Kotaro Mitsutake, Takuya Maeda et al. · 2019 · Journal of Medical Microbiology
  9. Effects of Bifidobacterium animalis Subsp. lactis (BPL1) Supplementation in Children and Adolescents with Prader–Willi Syndrome: A Randomized Crossover Trial
    Montse Amat-Bou, Sonika Garcia-Ribera, Eric Climent, Irene Piquer‐Garcia, Raquel Corripio, David Sánchez-Infantes, Laia Villalta, María Elías, Josep C. Jiménez‐Chillarón, Empar Chenoll et al. · 2020 · Nutrients
  10. Optimized DNA Extraction and Purification Method for Characterization of Bacterial and Fungal Communities in Lung Tissue Samples
    Vicente Pérez‐Brocal, Fabien Magne, Susana Ruiz‐Ruiz, Carolina A. Ponce, Rebeca I. Bustamante, Viviana San Martin, Mireya Gutierrez, Gianna Gatti, Sergio L. Vargas, Andrés Moyá · 2019 · Scientific Reports
  11. Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome
    Xavier A. Harrison, Allan D. McDevitt, Jenny Claire Dunn, Sarah M. Griffiths, Chiara Benvenuto, Richard John Birtles, Jean P. Boubli, Kevin J. Bown, Calum Bridson, Darren R. Brooks et al. · 2021 · Proceedings of the Royal Society B Biological Sciences
  12. An Introductory “How-to” Guide for Incorporating Microbiome Research into Integrative and Comparative Biology
    Kevin D. Kohl · 2017 · Integrative and Comparative Biology
  13. Outbreaks of an Emerging Viral Disease Covary With Differences in the Composition of the Skin Microbiome of a Wild United Kingdom Amphibian
    Lewis J. Campbell, Trenton W. J. Garner, Kevin Hopkins, Amber G. F. Griffiths, Xavier A. Harrison · 2019 · Frontiers in Microbiology
  14. Optimizing Nanopore Sequencing for Rapid Detection of Microbial Species and Antimicrobial Resistance in Patients at Risk of Surgical Site Infections
    Emma Whittle, Jennifer A. Yonkus, Patricio Jeraldo, Roberto Alva‐Ruiz, Heidi Nelson, Michael L. Kendrick, Thomas E. Grys, Robin Patel, Mark Joseph Truty, Nicholas Chia · 2022 · mSphere
  15. Expansion Microscopy: Super-Resolution Imaging with Hydrogels
    Sven Truckenbrodt · 2023 · Analytical Chemistry
  16. Clean Low-Biomass Procedures and Their Application to Ancient Ice Core Microorganisms
    Zhi-Ping Zhong, Natalie Solonenko, María Consuelo Gazitúa, Donald V. Kenny, Ellen Mosley‐Thompson, Virginia I. Rich, James L. Van Etten, Lonnie G. Thompson, Matthew B. Sullivan · 2018 · Frontiers in Microbiology
  17. Absolute quantification of prokaryotes in the microbiome by 16S rRNA qPCR or ddPCR
    Boryana Doyle, Gabriella Z. M. Reynolds, Mai Dvorak, Dylan G. Maghini, Aravind Natarajan, Ami Siddharth Bhatt · 2025 · Nature Protocols
  18. An Overview of Cultural, Molecular and Metagenomic Techniques in Description of Microbial Diversity
    Uwem Okon Edet, S. P. Antai, A. A. Brooks, Atim Asitok, Osim Enya, F Japhet · 2017 · Journal of Advances in Microbiology
  19. Biases during DNA extraction affect characterization of the microbiota associated with larvae of the Pacific white shrimp,Litopenaeus vannamei
    Ming Xue, Liyou Wu, Yaoyao He, Huafang Liang, Chongqing Wen · 2018 · PeerJ
  20. Challenges of next-generation sequencing targeting anaerobes
    Georg Conrads, Mohamed M. H. Abdelbary · 2019 · Anaerobe
  21. Comparison of five assays for DNA extraction from bacterial cells in human faecal samples
    Tessa Gryp, Griet Glorieux, Marie Joossens, Mario Vaneechoutte · 2020 · Journal of Applied Microbiology
  22. The Influence of DNA Extraction and Lipid Removal on Human Milk Bacterial Profiles
    Anna O. Okunola, Shantelle Claassen-Weitz, Kilaza Samson Mwaikono, Sugnet Gardner‐Lubbe, Heather Joy Zar, Mark Patrick Nicol, Elloise du Toit · 2020 · Methods and Protocols
  23. Gut Microbiota as a Potential Predictive Biomarker in Relapsing-Remitting Multiple Sclerosis
    Vicente Navarro‐López, María Ángeles Méndez-Miralles, Rosario Vela Yebra, Ana Fríes-Ramos, Pedro Sánchez-Pellicer, Beatriz Ruzafa-Costas, Eva Núñez-Delegido, Humberto Gómez-Gómez, Sara Chumillas-Lidón, José Antonio Picó-Monllor et al. · 2022 · Genes
  24. Ecosystem-specific microbiota and microbiome databases in the era of big data
    Victor P. Lobanov, Angélique Gobet, Alyssa Joyce · 2022 · Environmental Microbiome
  25. A Hybrid DNA Extraction Method for the Qualitative and Quantitative Assessment of Bacterial Communities from Poultry Production Samples
    Michael James Rothrock, Kelli L. Hiett, John T. Gamble, Andrew C. Caudill, Kellie M. Cicconi-Hogan, J. Gregory Caporaso · 2014 · Journal of Visualized Experiments
  26. The Gastric Microbiome and Its Influence on Gastric Carcinogenesis
    Chao Zhang, Sarah Ellen Powell, Doron Betel, Manish A. Shah · 2017 · Hematology/Oncology Clinics of North America
  27. Human Immunodeficiency Virus Infection Is Associated With Preterm Delivery Independent of Vaginal Microbiota in Pregnant African Women
    Muchaneta Gudza-Mugabe, Enock Havyarimana, Shameem Z. Jaumdally, Kirsty Lee Garson, Katie S. Lennard, Andrew Tarupiwa, Fortunate Mugabe, Tarisai Marere, Rooyen Tinago Mavenyengwa, Lindi Masson et al. · 2019 · The Journal of Infectious Diseases
  28. Alpha-diversity and microbial community structure of the male urinary microbiota depend on urine sampling method
    Jan Hrbacek, Daniel Morais, Pavel Čermák, Vítězslav Hanáček, Roman Zachoval · 2021 · Scientific Reports
  29. Comparison Analysis of Different DNA Extraction Methods on Suitability for Long-Read Metagenomic Nanopore Sequencing
    Lei Zhang, Ting Chen, Ye Wang, Shengwei Zhang, Qingyu Lv, Decong Kong, Hua Jiang, Yuling Zheng, Yuhao Ren, Wenhua Huang et al. · 2022 · Frontiers in Cellular and Infection Microbiology
  30. Microfluidics: A new tool for microbial single cell analyses in human microbiome studies
    Yuguang Liu, Marina R. S. Walther-Antonio · 2017 · Biomicrofluidics
  31. Effect of storage and DNA extraction method on 16S rRNA-profiled fecal microbiota in Japanese adults
    Yuki Kawada, Yuji Naito, Akira Andoh, Motoyuki Ozeki, Ryo Inoüe · 2018 · Journal of Clinical Biochemistry and Nutrition
  32. Whole-body microbiota of newborn calves and their response to prenatal vitamin and mineral supplementation
    Sarah M. Luecke, Devin B. Holman, Kaycie N. Schmidt, Katherine E. Gzyl, Jennifer L Hurlbert, Ana Clara B Menezes, Kerri A Bochantin, James D Kirsch, Friederike Baumgaertner, Kevin K K Sedivec et al. · 2023 · Frontiers in Microbiology
  33. The development and application of a molecular community profiling strategy to identify polymicrobial bacterial DNA in the whole blood of septic patients
    Monica Faria Crowder, John Maynard Conly, M.E. Surette · 2015 · BMC Microbiology
  34. The yield and quality of cellular and bacterial DNA extracts from human oral rinse samples are variably affected by the cell lysis methodology
    Mohsen Sohrabi, RAJ G. NAIR, Lakshman Perera Samaranayake, Li Zhang, Abu Hasanat Md. Zulfiker, Adnan Ahmetagic, David M. Good, Ming Qian Wei · 2016 · Journal of Microbiological Methods
  35. Assessment of microbiota:host interactions at the vaginal mucosa interface
    Pamela Pruski, Holly Lewis, Yun Sok Lee, Julian Roberto Marchesi, Phillip R. Bennett, Zoltán Takáts, David A. MacIntyre · 2018 · Methods
  36. Metagenomic investigation of African dust events in the Caribbean
    Samantha M. Waters, Sara Purdue, Roy A. Armstrong, Y. Detrés · 2020 · FEMS Microbiology Letters
  37. Preconception helminth infection alters offspring microbiota and immune subsets in a mouse model
    Donald D. Nyangahu, Matthew Darby, Enock Havyarimana, Bryan P. Brown, William G. C. Horsnell, Heather B. Jaspan · 2020 · Parasite Immunology
  38. Comparative evaluation of a new magnetic bead-based DNA extraction method from fecal samples for downstream next-generation 16S rRNA gene sequencing
    Kara D. McGaughey, Tulay Yilmaz-Swenson, Nourhan M. Elsayed, Dianne A. Cruz, Ramona Rodriguez, Michael D. Kritzer, Angel V. Peterchev, Megan Gray, Samantha R. Lewis, Jeffrey M. Roach et al. · 2018 · PLoS ONE
  39. Vaginal Glycogen, Not Estradiol, Is Associated With Vaginal Bacterial Community Composition in Black Adolescent Women
    Kenetta L. Nunn, Benjamin J. Ridenhour, Emily M. Chester, Virginia J. Vitzthum, J. Dennis Fortenberry, Larry J. Forney · 2019 · Journal of Adolescent Health
  40. The prebiotic effect of CPP-ACP sugar-free chewing gum
    James R. Fernando, Catherine A. Butler, Geoffrey Grant Adams, Helen L. Mitchell, Stuart G. Dashper, Karen Escobar, Brigitte Hoffmann, Peiyan Shen, Glenn D. Walker, Yi Yuan et al. · 2019 · Journal of Dentistry
  41. Breastfeeding may have a long-term effect on oral microbiota: results from the Fin-HIT cohort
    Ilana Eshriqui, Heli T. Viljakainen, Sandra Roberta G. Ferreira, Sajan C. Raju, Elisabete Weiderpass, Rejane Augusta de Oliveira Figueiredo · 2020 · International Breastfeeding Journal
  42. Effects of Whole-Grain and Sugar Content in Infant Cereals on Gut Microbiota at Weaning: A Randomized Trial
    Julio Plaza‐Díaz, María José Bernal, Sophie Schutte, Empar Chenoll, Salvador Genovés, Francisco M. Codoñer, Ángel Gil, Luis Manuel Sánchez-Siles · 2021 · Nutrients
  43. Impact of Technical Sources of Variation on the Hand Microbiome Dynamics of Healthcare Workers
    Mariana Rosenthal, Allison E. Aiello, Carol Chenoweth, Deborah E. Goldberg, Elaine Larson, Gregory Brian Gloor, Betsy Foxman · 2014 · PLoS ONE
  44. Quantitative Molecular Detection of Putative Periodontal Pathogens in Clinically Healthy and Periodontally Diseased Subjects
    André Göhler, Adrian Hetzer, Birte Holtfreter, Marie Henrike Geisel, Carsten Oliver Schmidt, Ivo Steinmetz, Thomas Kocher · 2014 · PLoS ONE
  45. Assessing the impact of long term frozen storage of faecal samples on protein concentration and protease activity
    Laura S. Morris, Julian Roberto Marchesi · 2016 · Journal of Microbiological Methods
  46. An Infant Milk Formula Supplemented with Heat-Treated Probiotic Bifidobacterium animalis subsp. lactis CECT 8145, Reduces Fat Deposition in C. elegans and Augments Acetate and Lactate in a Fermented Infant Slurry
    Ángela Silva, Núria González, Ana Terrén, Antonio G. Garcı́a, Juan Francisco Martínez-Blanch, Vanessa Illescas, Javier Morales, Marcos Maroto, Salvador Genovés, Daniel Ramón et al. · 2020 · Foods
  47. Absolute measurement of gene transcripts with Selfie-digital PCR
    Petar Podlesniy, Ramón Trullás · 2017 · Scientific Reports
  48. How the ‘kitome’ influences the characterization of bacterial communities in lepidopteran samples with low bacterial biomass
    Luis R. Paniagua Voirol, Georgios Valsamakis, M. Yu, Paul R. Johnston, Monika Hilker · 2020 · Journal of Applied Microbiology
  49. Invited review: Novel methods and perspectives for modulating the rumen microbiome through selective breeding as a means to improve complex traits: Implications for methane emissions in cattle
    Óscar González-Recio, Marina Martínez-Álvaro, Francesco Tiezzi, Alejandro Saborío‐Montero, Christian Maltecca, R. Roehe · 2023 · Livestock Science
  50. Feeding-Related Gut Microbial Composition Associates With Peripheral T-Cell Activation and Mucosal Gene Expression in African Infants
    Lianna Wood, Bryan P. Brown, Katie S. Lennard, Ulaş Karaöz, Enock Havyarimana, Jo-Ann Shelley Passmore, Anneke Catharina Hesseling, Paul T. Edlefsen, Louise Kuhn, Nicola Mulder et al. · 2018 · Clinical Infectious Diseases
  51. Effects of preservation method on canine ( Canis lupus familiaris ) fecal microbiota
    Katti R. Crakes, Holly H. Ganz, Jonathan A. Eisen, Stanley L. Marks · 2018 · PeerJ
  52. Rapid and Accurate Species Identification of Mitis Group Streptococci Using the MinION Nanopore Sequencer
    Kazuo Imai, Rina Nemoto, Masahiro Kodana, Norihito Tarumoto, Jun Sakai, Toru Kawamura, Kenji Ikebuchi, Kotaro Mitsutake, Takashi Murakami, Shigefumi Maesaki et al. · 2020 · Frontiers in Cellular and Infection Microbiology
  53. Specific Dietary Components and Gut Microbiota Composition are Associated with Obesity in Children and Adolescents with Prader–Willi Syndrome
    Sonika Garcia-Ribera, Montse Amat-Bou, Eric Climent, Marina Llobet, Empar Chenoll, Raquel Corripio, Lourdes Ibáñez, Marta Ramon‐Krauel, Carles Lerín · 2020 · Nutrients
  54. Functional characterization of prokaryotic dark matter: the road so far and what lies ahead
    Pedro Escudeiro, Christopher S. Henry, Ricardo Pedro Moreira Dias · 2022 · Current Research in Microbial Sciences
  55. Impact of intravesical Bacillus Calmette-Guérin and chemotherapy on the bladder microbiome in patients with non-muscle invasive bladder cancer
    Christopher A. James, Kayéromi D. Gomez, Shalin Desai, Hiten Dilip Patel, Goran Rac, Chirag P. Doshi, Ryan A. Dornbier, Petar Bajic, Thomas M. Halverson, Gopal Nand Gupta et al. · 2023 · Frontiers in Cellular and Infection Microbiology
  56. Ultra-sensitive detection of Mycobacterium leprae: DNA extraction and PCR assays
    Fernanda Saloum de Neves Manta, Thyago Leal-Calvo, Suelen Justo Maria Moreira, B.L.C. Marques, Marcelo Ribeiro Alves, Patrícia Sammarco Rosa, José A. C. Nery, ‪Rita de Cássia Pontello Rampazzo, Alexandre Dias Tavares Costa, Marco Aurélio Krieger et al. · 2020 · PLoS neglected tropical diseases
  57. A Longitudinal Characterization of the Seminal Microbiota and Antibiotic Resistance in Yearling Beef Bulls Subjected to Different Rates of Gain
    Emily M. Webb, D. Holman, Kaycie N. Schmidt, M. Crouse, C. Dahlen, R. Cushman, A. Snider, K. McCarthy, S. Amat · 2023 · Microbiology spectrum
  58. Isolation and Characterization of Biosurfactant Producing and Crude Oil Degrading Bacteria from Oil Contaminated Soils
    Ali Akbar Ebadi, Mohsen Olamaee, Nayer Azam Khoshkholgh Sima, Reza Ghorbani Nasrabadi, Maryam Hashemi · 2017 · Iranian Journal of Science and Technology Transactions A Science
  59. The composition of the vaginal microbiome in first trimester pregnant women influences the level of autophagy and stress in vaginal epithelial cells
    Dimitrios Nasioudis, Larry J. Forney, G. Maria Schneider, Karol Gliniewicz, Michael France, Allison Boester, Mio Sawai, Jessica E. Scholl, Steven Sol Witkin · 2017 · Journal of Reproductive Immunology
  60. Effects of parental care on resource allocation into immune defense and buccal microbiota in mouthbrooding cichlid fishes*
    Isabel Salome Keller, Till Bayer, Walter Salzburger, Olivia Roth · 2018 · Evolution
  61. Compositional and temporal stability of fecal taxon libraries for use with SourceTracker in sub-tropical catchments
    Christian O’Dea, Qian Zhang, Christopher M. Staley, Nicole M. Masters, Anna Kuballa, Paul L. Fisher, Cameron James Veal, Helen M. Stratton, Michael Jay Sadowsky, Warish Ahmed et al. · 2019 · Water Research
  62. Improved single-swab sample preparation for recovering bacterial and phage DNA from human skin and wound microbiomes
    Samuel Verbanic, Colin Y. Kim, John M. Deacon, Irene A. Chen · 2019 · BMC Microbiology
  63. Relationship between duodenal microbiota composition, clinical features at diagnosis, and persistent symptoms in adult Coeliac disease
    Annalisa Schiepatti, Sara Bacchi, Federico Biagi, Simona Panelli, E. Betti, Gino Roberto Corazza, Enrica Capelli, Rachele Ciccocioppo · 2021 · Digestive and Liver Disease
  64. Implications of taxonomic bias for microbial differential-abundance analysis
    Michael R. McLaren, Jacob T. Nearing, Amy D. Willis, Karen G. Lloyd, Benjamin J. Callahan · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  65. Comparison of two commercial DNA extraction kits for the analysis of nasopharyngeal bacterial communities
    Marcos Pérez‐Losada, Keith A. Crandall, Robert J. Freishtat · 2016 · AIMS Microbiology
  66. Highly Reproducible 16S Sequencing Facilitates Measurement of Host Genetic Influences on the Stickleback Gut Microbiome
    Clayton M. Small, Mark C. Currey, Emily A. Beck, Susan Bassham, William A. Cresko · 2019 · mSystems
  67. Densely Populated Water Droplets in Heavy-Oil Seeps
    Mark Pannekens, Lisa Voskuhl, Arne Meier, Hubert Müller, Shirin Haque, Jan Frösler, Verena S. Brauer, Rainer U. Meckenstock · 2020 · Applied and Environmental Microbiology
  68. Evaluation of DNA Extraction Methods for Reliable Quantification of Acinetobacter baumannii, Klebsiella pneumoniae, and Pseudomonas aeruginosa
    Alexandra Bogožalec Košir, Dane Lužnik, Viktorija Tomič, Mojca Milavec · 2023 · Biosensors
  69. Challenges in simulating the human gut for understanding the role of the microbiota in obesity
    Marisol Aguirre, Koen Venema · 2016 · Beneficial Microbes
  70. Identifying active rumen epithelial associated bacteria and archaea in beef cattle divergent in feed efficiency using total RNA-seq
    Rebecca Siu Ga Tan, Mi Zhou, Fuyong Li, Le Luo Guan · 2021 · Current Research in Microbial Sciences
  71. Diversity of the gut, vaginal and oral microbiome among pregnant women in South Africa with and without pre-eclampsia
    Janri Geldenhuys, Mathys J. Redelinghuys, Hendrik A. Lombaard, Marthie Magdaleen Ehlers, Don Arthur Cowan, Marleen Magdalena Kock · 2022 · Frontiers in Global Women s Health
  72. The Human Microbiota: Composition, Functions, and Therapeutic Potential
    Rick Conrad, Alexander V. Vlassov · 2015 · Medical Science Review
  73. The application status of sequencing technology in global respiratory infectious disease diagnosis
    Jingyuan Chen, Zhen Qin, Zhongwei Jia · 2024 · Infection
  74. Microfluidic platform for rapid screening of bacterial cell lysis.
    Ricardo Fradique, Ana M. Azevedo, V. Chu, J. Conde, M. Aires-Barros · 2020 · Journal of Chromatography A
  75. An Insight into Vaginal Microbiome Techniques
    Mahima Sharma, Chitrakshi Chopra, Malvika Mehta, Varun Sharma, Sharada Mallubhotla, Srinivas Sistla, Jyothi C. Sistla, Indu Bhushan · 2021 · Life
  76. Comparison of DNA Extraction Methods for Human Oral Microbiome Research
    Jing Wu · 2014 · Journal of Advances in Medicine and Medical Research
  77. Host Microbiome Richness Predicts Resistance to Disturbance by Pathogenic Infection in a Vertebrate Host
    Xavier A. Harrison, Stephen J. Price, Kevin Hopkins, William T. M. Leung, Chris Sergeant, Trenton W. J. Garner · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  78. De-biasing microbiome sequencing data: bacterial morphology-based correction of extraction bias and correlates of chimera formation
    Luise Rauer, Amedeo De Tomassi, Christian L. Müller, Claudia Hülpüsch, Claudia Traidl‐Hoffmann, Matthias Reiger, Avidan Uriel Neumann · 2025 · Microbiome
  79. Chemistry and Bioinformatics Considerations in Using Next-Generation Sequencing Technologies to Inferring HIV Proviral DNA Genome-Intactness
    Guinevere Q. Lee · 2021 · Viruses
  80. Cross-comparison of gut metagenomic profiling strategies
    Gábor Máté Gulyás, Balázs Kakuk, Ákos Dörmő, Tamás Járay, István Prazsák, Zsolt Csabai, Miksa Máté Henkrich, Zsolt Boldogkői, Dóra Tombácz · 2024 · Communications Biology
  81. Influence of Diet Composition on Cattle Rumen Methanogenesis: A Comparative Metagenomic Analysis in Indian and Exotic Cattle
    Nidhi R. Parmar, Prabhakar D. Pandit, Hemant J. Purohit, Jitendra Kumar, Chaitanya G. Joshi · 2017 · Indian Journal of Microbiology
  82. Spatiotemporal dynamics of the bacterial microbiota on lacustrine Cladophora glomerata (Chlorophyta)
    Michael J. Braus, Linda Edwards Graham, Thea L. Whitman · 2017 · Journal of Phycology
  83. The Respiratory Microbiome in Cystic Fibrosis: Compartment Patterns and Clinical Relationships in Early Stage Disease
    Marian García-Núñez, Miguel García González, Xavier Pomares, Concepción Montón, Laura Millares, Sara Quero, Elena Prina, Oscar Asensio-De la Cruz, Montserrat Bosque García, Sílvia Capilla et al. · 2020 · Frontiers in Microbiology
  84. Association of Skin Microbiome with the Onset and Recurrence of Pressure Injury in Bedridden Elderly People
    Shigefumi Okamoto, Kazuhiro Ogai, Kanae Mukai, Junko Sugama · 2021 · Microorganisms
  85. Lower airway microbiota in COPD and healthy controls
    Solveig Tangedal, Rune Nielsen, Marianne Aanerud, Christine Drengenes, Gunnar Reksten Husebø, Sverre Lehmann, Kristel Svalland Knudsen, Pieter Sicco Hiemstra, Tomas Eagan · 2024 · Thorax
  86. Basic Microbiome Analysis: Analytical Steps from Sampling to Sequencing
    Gülfem Terek Ece, Ahmet Aktaş, Özlem Koyuncu Özyurt, Hadiye Demirbakan, Hikmet Eda Alışkan, İmran Sağlık, Orçun Zorbozan, Alev Çetin Duran, Ayşe Rüveyda Uğur, Duygu Nilüfer ÖCAL et al. · 2026 · Microorganisms
  87. Contagious Antibiotic Resistance: Plasmid Transfer among Bacterial Residents of the Zebrafish Gut
    Wesley Loftie‐Eaton, Angela Crabtree, David Perry, Jack Millstein, Justin Baytosh, Thibault Stalder, Barrie D. Robison, Larry J. Forney, Eva Maria Top · 2021 · Applied and Environmental Microbiology
  88. Bioinformatics in Microbiome Analysis
    Yuhan Hao, Zhiheng Pei, Stuart M. Brown · 2017 · Methods in microbiology
  89. A Comparison of Homogenization vs. Enzymatic Lysis for Microbiome Profiling in Clinical Endoscopic Biopsy Tissue Samples
    Chao Zhang, Prashant V. Thakkar, Sarah Ellen Powell, Prateek Sharma, Sreekar Vennelaganti, Doron Betel, Manish A. Shah · 2019 · Frontiers in Microbiology
  90. Assessing the comparability of different DNA extraction and amplification methods in gut microbial community profiling
    Elizabeth K. Mallott, Ripan Singh Malhi, Katherine Ryan Amato · 2019 · Access Microbiology
  91. Environmental Controls on Microbial Diversity in Arctic Lakes of West Greenland
    Dana J. Somers, Kristin E. Strock, Jasmine E. Saros · 2019 · Microbial Ecology
  92. Amplicon-sequencing of raw milk microbiota: impact of DNA extraction and library-PCR
    Annemarie Siebert, Katharina Hofmann, Lena Staib, Etienne V. Doll, Siegfried Scherer, Mareike Wenning · 2021 · Applied Microbiology and Biotechnology
  93. A novel chemical lysis method for maximum release of DNA from difficult-to-lyse bacteria
    Olle M. de Bruin, Amy K. Chiefari, Danielle Wroblewski, Christina T. Egan, Cassandra Kelly Cirino · 2018 · Microbial Pathogenesis
  94. Sources, Processing-Related Transformation, and Gut Axis Regulation of Conventional and Potential Prebiotics.
    Lu Cheng, Lingyu Kong, Chao-shuang Xia, Xiao-Qun Zeng, Zhen Wu, Yu-Xing Guo, D. Pan · 2022 · Journal of Agricultural and Food Chemistry
  95. Methodological approaches in 16S sequencing of female reproductive tract in fertility patients: a review
    I. M. Davidson, Elham Nikbakht, Larisa Margaret Haupt, Kevin J. Ashton, Paul Joseph Dunn · 2024 · Journal of Assisted Reproduction and Genetics
  96. The influence of diet on gut microbiome and body mass dynamics in a capital-breeding migratory bird
    Isabelle L Jones, Kirsty J. Marsh, Tess Handby, Kevin Hopkins, Julia Slezacek, Stuart Bearhop, Xavier A. Harrison · 2023 · PeerJ
  97. Bioinformatic Methodologies in Assessing Gut Microbiota
    Fox, James Douglas, Sims, Austin, Ross, Morgan, Bettag, Jeffery, Wilder, Alexandra, Natrop, Dylan, Borsotti, Alison, Kolli, Sree, Mehta, Shaurya, Verma, Hema et al. · 2024 · Microbiology Research
  98. A comparison of storage methods for gut microbiome studies in teleosts: Insights from rainbow trout (Oncorhynchus mykiss)
    Mathis Hildonen, Miyako Kodama, Lara Puetz, Marcus Thomas P. Gilbert, Morten T. Limborg · 2019 · Journal of Microbiological Methods
  99. Dysbiosis of the Urinary Bladder Microbiome in Cats with Chronic Kidney Disease
    Younjung Kim, Maura Carrai, Marcus H. Y. Leung, Jaime Chin, Jun Li, Patrick K. H. Lee, Julia A. Beatty, Dirk Udo Pfeiffer, Vanessa R. Barrs · 2021 · mSystems
  100. Characteristics of the Skin Microbiome in Selected Dermatological Conditions: A Narrative Review
    Esther Olunoiki, Jacqueline Rehner, Markus Bischoff, Elena I. Koshel, THOMAS M. VOGT, Jörg Reichrath, Sören L. Becker · 2022 · Life