Characterization of the Gut Microbial Community of Obese Patients Following a Weight-Loss Intervention Using Whole Metagenome Shotgun Sequencing

Louis, Sandrine, Tappu, Rewati-Mukund, Damms-Machado, Antje, Huson, Daniel H., Bischoff, Stephan C.·2016·PLoS ONE

DOI 10.1371/journal.pone.0149564

Cited by (269)

Items 201–269 of 269

Effect of a multiphase dietary intervention on metabolic profile and gut microbiota composition in metabolically healthy and unhealthy obese subjects
Neus Bosch‐Sierra, Beatriz Navajas-Porras, Carmen Grau-del Valle, Christian Salom, Sergio Pérez-Burillo, G. D'Auria, Maria Pilar Francino, Carlos Morillas, Celia Bañuls · 2025 · Clinical Nutrition
Molecular genetic methods for intestinal microbiome investigation
Olga L. Kardymon, Anna V. Kudryavtseva · 2016 · Russian Journal of Gastroenterology Hepatology Coloproctology
Functional development and performance enhancement of probiotics
Juan Zhang, Jian Chen · 2018 · Chinese Science Bulletin (Chinese Version)
Evaluation of Microbiota and Weight Alterations After the Administration of Tetracycline and Lactobacillus gasseri in Rats
Fernando S. Olimpio, Fernando de Sá Del Fiol, Renata de Lima, Karina S. Rosa, Guilherme Augusto Sanches Roque, Cintia V. Santos, John E. Piletz · 2020 · Current Microbiology
Does caloric restriction prime the microbiome for pathogenic bacteria?
K. Leigh Greathouse, Abigail J. Johnson · 2021 · Cell Host & Microbe
An analysis of gut dysbiosis in obesity, diabetes, and chronic gut conditions
Ahmed Haleem, Sama Anvari, Aisha Nazli, Mohamed Sager, Mahmood Akhtar · 2020 · Ibnosina Journal of Medicine and Biomedical Sciences
Microbiote intestinal : qu’en attendre au plan physiologique et thérapeutique ?
Joel M. Dore, Marie-Christine Multon, Jéhan‐Michel Béhier, Hervé Affagard, Antoine Andremont, Philippe Barthélémy, Rui Batista, Marc Bonneville, Christophe Bonny, Gwendoline Boyaval et al. · 2017 · Therapies
Towards Individualized Use of Probiotics and Prebiotics for Metabolic Syndrome and Associated Diseases Treatment: Does Pathophysiology-Based Approach Work and Can Anticipated Evidence Be Completed?
Rostyslav V Bubnov, Spivak NIa · 2018 · Preprints.org
Diet and long-term weight loss: what can we learn from our gut microbes?
Noel Theodore Mueller, Mingyu Zhang · 2020 · American Journal of Clinical Nutrition
Amelioration of metabolic syndrome in high-fat diet-fed mice by total sesquiterpene lactones of chicory via modulation of intestinal flora and bile acid excretion
Lushi Huang, Zhiwei Zhang, Fengqi Zhang, Weichen Zhang, Xiuhua Meng, Tunyu Jian, Xiaoqin Ding, Jian Chen · 2025 · Food & Function
Nutritional Studies Evaluating Ketogenic Diets as a Treatment for Obesity and Obesity-Associated Morbidities: Underlying Mechanisms and Potential for Clinical Implementation
Luciano Pirola, Karolina Maria Górecka, Carol Góis Leandro, Aneta Balcerczyk · 2024 · Endocrines
Understanding the Role of (Advanced) Machine Learning in Metagenomic Workflows
Thomas Krause, Bruno Gabriel Nascimento Andrade, Haithem Afli, Haiying Wang, Huiru Zheng, Matthias Hemmje · 2021 · Lecture notes in computer science
Physical Therapy for Knee Pain Relief Induces Changes in Gut Microbiome Composition: A Secondary Analysis of Data From a Randomized Controlled Trial
Afroditi Kouraki, Amrita Vijay, Sameer Akram Gohir, Bonnie Millar, Anthony Kelly, Ana Maria Valdes · 2024 · Sports Health A Multidisciplinary Approach
Characteristics and consequences of a disease outbreak in aquatic insects
Galen Holt, Georgia Dwyer, Courtney Bourke, Ty G. Matthews, Ashley Macqueen, Rebecca E. Lester · 2021 · Freshwater Biology
Gut Microbiota Diversity in Lean Athletes Is Associated with Positive Energy Balance
Viktor Bielik, Ivan Hric, Vladimír Baláž, Adela Penesová, Silvia Vávrová, Jozef Grones, Boris Bokor, Jaroslav Budiš, Miroslav Böhmer, Gabriel Minárik et al. · 2020 · Annals of Nutrition and Metabolism
Purified C. pilosula polysaccharides attenuate streptozotocin-induced oxidative stress and restore gut microbiota in T2DM mice
Fang Wang, Yanjie Yang, Lulu Wang, Haohao Wang, Wendi Wang, Shuhong Yang, Mingjun Yang, Chun Zhang, Yonggang Wang · 2025 · International Journal of Biological Macromolecules
Gut microbiome composition and strain-sharing in multiplex autism spectrum disorder families
Wenqi Lu, Oscar W. Wong, Jie Zhu, Sizhe Chen, Hein M. Tun, Yating Wan, Zhilu Xu, Chun Pan Cheung, Jessica Y. L. Ching, Pui Kuan Cheong et al. · 2026 · Nature Communications
Microbiota intestinal e síndrome metabólica: utilização terapêutica de probióticos
Luciano Pedro da Silva, Rafaela Bezerra Rovai, Joyce Josilene De Rezende, Bruna Gonçalves Das Mercês, Caroline Bianca Ferreira Teixeira Da Silva, Deborah Cristina Landi Masquio · 2023 · Revista da Associação Brasileira de Nutrição - RASBRAN
Natural Changbai mineral water reduces obesity risk through regulating metabolism and gut microbiome in a hyperuricemia male mouse model
Maichao Li, Kai Guo, Yuwei He, Hailong Li, Wenyan Sun, Xuan Yuan, Zhen Liu, Xinde Li, Tony Raymond Merriman, Changgui Li et al. · 2024 · Frontiers in Nutrition
Enhanced Anti-Obesity Effects of Euphorbia Kansui Extract through Macrophage and Gut Microbiota Modulation: A Real-World Clinical and In Vivo Study
Ji-won Noh, Jung-hwa Yoo, Byung-Cheol Lee · 2024 · Pharmaceuticals
Modulation of the fecal microbiota and metabolome from an obese adult using a dynamic in vitro human ascending colon model with Triphala extract
Pincha Kwandee, Surasawadee Somnuk, Wuttichai Mhuantong, Yodying Yingchutrakul, Chutikarn Butkinaree, Bandhita Wanikorn, Sittiruk Roytrakul, Massalin Nakphaichit, Paiboon Tunsagool · 2025 · Food Bioscience
Verdauungsoptimierung – wie sich Ernährung und Mikrobiom gegenseitig beeinflussen
Stephan C. Bischoff · 2019 · DMW - Deutsche Medizinische Wochenschrift
Effects of fermented coffee on human gut microbiota
Gwangpyo Ko, Jin-Kyeong Kim, Seong-Wha Jo, Do‐Youn Jeong, Tatsuya Unno · 2020 · Journal of Applied Biological Chemistry
Bariatric surgery: Is a matter of cutting calories or cutting metabolic regulators?
Anna Belligoli, Silvia Bettini, Luca Busetto · 2018 · Current Opinion in Endocrine and Metabolic Research
Unsupervised integration of multimodal dataset identifies novel signatures of health and disease
Ilan Shomorony, Elizabeth T. Cirulli, Lei Huang, Lori A. Napier, Robyn Heister, Michael A. Hicks, Isaac V. Cohen, Hung‐Chun Yu, Christine Leon Swisher, Natalie M. Schenker-Ahmed et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
The Profile and Function of Gut Microbiota in Chronic Kidney Disease
Weihong Chen, Shuwu Wei, Shen Yue, Wei Jiang, Wenna Wang, Fubin Teng, Weiwei Sun, Hongfang Liu · 2023 · Research Square
Association Between the Dietary Index for Gut Microbiota and Metabolic Syndrome: Mediation Effects of Albumin and Systemic Immune‐Inflammation Index
Shouxin Wei, Sijia Yu, Chuan Qian · 2025 · Food Science & Nutrition
The Relationship Between Gut Microbiota During Pregnancy and the Level of Postpartum Adiposity
Noora Houttu, Kati Mokkala, Himmi Lindgren, Mrunalini Lotankar, Chouaib Benchraka, Katariina M. M. Pärnänen, Lotta Saros, Ella Muhli, Tero J. Vahlberg, Leo Lahti et al. · 2025 · MicrobiologyOpen
Effects of Obesity and Feeding Avocado Extract on Gut Microbiota and Fecal Metabolomic Profile in Overweight/Obese Cats
Roman Husník, Jon M. Fletcher, Rachel Pilla, Donald K. Ingram, Frederic P. Gaschen, George Roth, Chih-Chun Chen, Jan S. Suchodolski · 2025 · Microbiology Research
Verdauungsoptimierung – wie sich Ernährung und Mikrobiom gegenseitig beeinflussen
Stephan C. Bischoff · 2020 · Aktuelle Ernährungsmedizin
Human Gut Microbiota and Obesity: How Is Gut Microbiota Associated with Obesity Improvement Induced by Bariatric Surgeries or Low-Calorie Diet Treatment?
Rui Zhang · 2017 · Louisiana State University
Dietary Management of Obesity Minimally Effects Variation of the Feline Fecal Microbiota's Metabolic Function
B DiSabatino · 2019 · The Atrium (University of Guelph)
Das intestinale Mikrobiom – wie es uns Menschen beeinflusst
Stephan C. Bischoff · 2017 · Endo-Praxis
Avaliação da viabilidade e funcionalidade de microrganismos probióticos microencapsulados em partículas lipídicas recobertas por interação eletrostática de polímeros
Fernando Eustáquio de Matos · 2018 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
Ernährung und Darmmikrobiom
Stephan C. Bischoff · 2019 · Die Gastroenterologie
Mikrobiom und Stoffwechsel beim polyzystischen Ovarialsyndrom (PCOS)
Wolfgang R. Heizmann, Christoph Keck · 2021 · Der Gynäkologe
Impact of Metabolic Regulation in Understanding the Status of Human Health and Diseases: A Review
Nadeem Siddiqui, P. Lakshmi Bhavana, Vemuri Sarvani, Sriraman Gurumanchi, Sibin Nambidi, Sai Madhav, Golamari Siva Reddy, G. Koteswara Reddy, Koteswara Rao · 2022 · International Journal of Life Science and Pharma Research
Gut microbiota and obesity. Can probiotics help?
Irina N. Zakharova, Irina V. Berezhnaya, Mariia A. Simakova · 2021 · Pediatrics Consilium Medicum
The role of the intestinal microbiota in weight loss in overweight and obese humans
Isabel Sospedra López, Gema Alfonso Sigüenza, Estela González Rodríguez, Mar Lozano‐Casanova, José Miguel Martínez-Sanz · 2022 · Elsevier eBooks
Early-stage Hyperglycemia-induced Gut Microbial Changes Are Partially Associated with Mechanical Allodynia in db/db Mice
Xinting Wang, Jihong Wu, Simin Qi, Rui Huang, Xiaoping Wu, Lin Tian, Peili Wang, Shenglan Wang · 2021 · International Journal of Diabetes and Endocrinology
Pathogenetic Role of the Intestinal Microflora in the Obesity Development
І.О. Снігурська, В.В. Божко, D.К. Miloslavsky, Marina Yu. Penkova · 2022 · Ukraïnsʹkij žurnal medicini bìologìï ta sportu
Implicações da cirurgia bariátrica na microbiota intestinal
Monique Vasconcellos Mascarenhas, Camila de Melo Accardo, Rômulo Tadeu Dias de Oliveira, José Maria Montiel, Priscila Larcher Longo · 2022 · Colloquium health and education
Pilot study of the association between microbiome and the development of adverse posttraumatic neuropsychiatric sequelae after traumatic stress exposure
Abigail L. Zeamer, Marie-Claire Salive, Xinming An, Stacey L. House, Francesca L. Beaudoin, Jennifer Strafford Stevens, Donglin Zeng, Thomas C. Neylan, Gari D. Clifford, Sarah D. Linnstaedt et al. · 2023 · medRxiv
Duodenal microbiota and weight-loss following sleeve gastrectomy and Roux-en-Y gastric bypass – a pilot study
Tomasz Stefura, Jakub Rusinek, Maciej Zając, Barbara Zapała, Tomasz Gosiewski, Agnieszka Sroka-Oleksiak, Dominika Salamon, Michał Pędziwiatr, Piotr Major · 2023 · BMC Surgery
Insertion Sequence Driven Evolution of the Microbiota Revealed by a Novel Metagenomics Pipeline
Joshua M. Kirsch, Andrew J. Hryckowian, Breck A. Duerkop · 2023 · SSRN Electronic Journal
Transfer with microbiota from lean donors prevents excessive weight gain and restores gut-brain vagal signaling in obese rats maintained on a high fat diet
Dulce M. Minaya, Jiyoung S. Kim, Rebecca A. Kirkland, Jillian T. Allen, Sitara Cullinan, Neil Maclang, Guillaume de Lartigue, Claire Barbier de La Serre · 2024 · Research Square
Effects of green and black tea kombuchas consumption on the body composition, intestinal health, and markers of metabolism, oxidative stress, and inflammation in Wistar rats and humans
Mirian Aparecida de Campos Costa · 2024
Interdisziplinäre Adipositastherapie – Erfahrungen des Adipositasnetzes Stuttgart Esslingen Tübingen, Ludwigsburg-Bietigheim (ANSET) – Ein Positionspapier
Stephan C. Bischoff, Michael W. Müller, Tobias Meile, Jessica Lange, Ralf Lobmann, Daniel Wulff, Daniel Kopf, Katrin Hebestreit, Björn Nolting, Dieter Birk et al. · 2025 · Aktuelle Ernährungsmedizin
Study of gut microbiota in cholangiocarcinoma patients
Olga Sergeevna Fedorova, Anna E. Kovshirina, Т. S. Sokolova, Куленич Виктория Владимировна, Ludmila Mikhailovna Ogorodova · 2025 · Bulletin of Siberian Medicine
Multi-Omics Insights into the Relationship Between Intestinal Microbiota and Abdominal Fat Deposition in Meat Ducks
Zhixiu Wang, Chunyan Yang, Yan Li, Bingqiang Dong, Qianqian Song, Hao Bai, Yong Jiang, Guobin Chang, Guohong Chen · 2025 · Animals
Additional file 1 of Lifestyle modifications result in alterations in the gut microbiota in obese children
Ky Young Cho · 2021 · Figshare
Additional file 2 of Lifestyle modifications result in alterations in the gut microbiota in obese children
Ky Young Cho · 2021 · Figshare
Additional file 3 of Lifestyle modifications result in alterations in the gut microbiota in obese children
Ky Young Cho · 2021 · Figshare
Additional file 3 of Gut microbiota predicts body fat change following a low-energy diet: a PREVIEW intervention study
Jian, Ching, Silvestre, Marta Paulino, Middleton, Danielle, Korpela, Katri, Elli Jalo, Broderick, David, de Vos, Willem Meindert, Mikael Fogelholm, Mike William Taylor, Anne Raben et al. · 2022 · Figshare
Additional file 1 of Gut microbiota predicts body fat change following a low-energy diet: a PREVIEW intervention study
Jian, Ching, Silvestre, Marta Paulino, Middleton, Danielle, Korpela, Katri, Elli Jalo, David T. J. Broderick, de Vos, Willem Meindert, Mikael Fogelholm, Mike William Taylor, Anne Raben et al. · 2022 · Figshare
Additional file 1 of Identification of robust and generalizable biomarkers for microbiome-based stratification in lifestyle interventions
Jiarui Chen, Sara Leal Siliceo, Ni, Yueqiong, Nielsen, Henrik B., Xu, Aimin, Panagiotou, Gianni · 2024 · Figshare
Microbial Dysbiosis and Metabolic Disorder
K. Kesavardhini, P. Saranraj, U. Subhalakshmi, K. Gayathri, Balachander Lokeshwari · 2026 · IGI Global eBooks
Rôle de Vanin-1 dans l'intéraction hôte-microbiote et la physiopathologie des maladies inflammatoires chroniques de l'intestin (MICI)
Michaël Maltese · 2016 · theses.fr (ABES)
Impact of body weight and antibiotic disturbance on canine gut microbiota : in vitro simulation and restoration strategies
Charlotte Deschamps · 2023 · theses.fr (ABES)
PHARMACOLOGICAL AND SURGICAL TREATMENT OF OBESITY: INTEGRATING THE ROLES OF INFLAMMATION AND GUT DYSBIOSIS- REVIEW
Karolina Zarówna, Weronika Pura, Jakub Mazur, Jakub Marciniak, Mateusz Kosowski, Dominika Matecka, Wiktor Śliwiński, Daniel Chołuj · 2026 · International Journal of Innovative Technologies in Social Science
Colonic nutritional and physicochemical parameters drive gut microbiota dysbiosis in obesity: what we learned from the Ob-M-ARCOL model development
Ophélie Uriot, Charlotte Deschamps, Lucie Etienne‐Mesmin, Morgane Brun, Mélanie Pouget, Sandrine Chalançon, Claude Durif, Cyril Chaudemanche, Monique Alric, Yves Boirie‌ et al. · 2026 · Gut Microbes
Strain transmission links human microbiomes along the oral-gut axis and across cohabiting individuals
Vitor Heidrich, Gloria Fackelmann, Liviana Ricci, Roan Spadazzi, Gabriel Baldanzi, Michal Punčochář, Giulia Naspi Catassi, Paolo Marchi, Monica Modesto, Gianmarco Piccinno et al. · 2026 · Cell Press Blue
Established and Emerging Biomarkers to Characterize Persons at Risk for Obesity—Paving the Way for Targeted Clinical Intervention Trials—A Comprehensive Position Paper
Farhad Vahid, Victoria Stopa, Laurent Malisoux, Yvan Devaux, Elsa Lamy, Fernando Manuel Salvado Capela e Silva, Sarah Forberger, Tiziana De Magistris, Antoni Sureda, Margalida Monserrat-Mesquida et al. · 2026 · Obesity Reviews
Oral and gut microbiota features associated with weight-loss outcomes after metabolic and bariatric surgery: A pilot study
Ahmed Alwali, Louise Bruun Thingholm, Corinna Bang, Jan Henrik Beckmann, Sebens Susanne, Malte Christoph Rühlemann, Matthias Laudes, Clemens Schafmayer, André Franke, Mark Philipp et al. · 2026 · Clinical Nutrition ESPEN
Baseline gut microbiome and metabolome profiles predict weight loss after a structured lifestyle intervention
Benjamin Seethaler, Maryam Basrai, Nathalie M. Delzenne, Jens Walter, Nguyen K. Nguyen, Stephan C. Bischoff · 2026 · Microbiome
Sex-dependent gut microbiota modulation in responders and non-responders with obesity to a multiphase weight-loss dietary intervention
Beatriz Navajas-Porras, Neus Bosch‐Sierra, Carmen Grau-del Valle, Catherine Pesantes-Somogyi, Sergio Pérez-Burillo, Giuseppe D’Auria, Maria Pilar Francino, Carlos Morillas, Celia Bañuls · 2026 · Research Square
Complete genome sequence of Subdoligranulum sp. strain DSM 23681 isolated from the cecum of a broiler chicken
Paul Taillandier, Karine Clément, Tiphaine Le Roy · 2026 · Microbiology Resource Announcements
Digestion and Fermentation Behavior of Ampelopsis grossedentata Tea Polysaccharide and Its Modulation on Human Gut Microbiome
Lu Xu, Yuli Chen, Kailin Li, Tim‐Fat Shum, Cheng Li, Yong Cao, Jiachi Amber Chiou · 2026 · SSRN Electronic Journal
Sequence diversity of gut microbial enzymes reveals strain-level associations with obesity
Silvia Petraro, Chiara Tarracchini, Leonardo Mancabelli, Gabriele Andrea Lugli, Francesca Turroni, Marco Ventura, Christian Milani · 2026 · Microbiome Research Reports