The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
Evaluating collinearity effects on species distribution models: An approach based on virtual species simulation
Open accessAbstract
The increasing use of species distribution modeling (SDM) has raised new concerns regarding the inaccuracies, misunderstanding, and misuses of this important tool. One of those possible pitfalls - collinearity among environmental predictors - is assumed as an important source of model uncertainty, although it has not been subjected to a detailed evaluation in recent SDM studies. It is expected that collinearity will increase uncertainty in model parameters and decrease statistical power. Here we use a virtual species approach to compare models built using subsets of PCA-derived variables with models based on the original highly correlated climate variables. Moreover, we evaluated whether modelling algorithms and species data characteristics generate models with varying sensitivity to collinearity. As expected, collinearity among predictors decreases the efficiency and increases the uncertainty of species distribution models. Nevertheless, the intensity of the effect varied according to the algorithm properties: more complex procedures behaved better than simple envelope models. This may support the claim that complex models such as Maxent take advantage of existing collinearity in finding the best set of parameters. The interaction of the different factors with species characteristics (centroid and tolerance in environmental space) highlighted the importance of the so-called "idiosyncrasy in species responses" to model efficiency, but differences in prevalence may represent a better explanation. However, even models with low accuracy to predict suitability of individual cells may provide meaningful information on the estimation of range-size, a key species-trait for macroecological studies. We concluded that the use of PCA-derived variables is advised both to control the negative effects of collinearity and as a more objective solution for the problem of variable selection in studies dealing with large number of species with heterogeneous responses to environmental variables.
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Cites
A review of methods for the assessment of prediction errors in conservation presence/absence models
FIELDING, A. H., & BELL, J. F. (1997) · Environmental Conservation · doi:10.1017/s0376892997000088 · Cited by 6,956
A statistical explanation of MaxEnt for ecologists
Elith, J., Phillips, S. J., Hastie, T., Dudík, M., Chee, Y. E., & Yates, C. J. (2011) · Diversity and Distributions · doi:10.1111/j.1472-4642.2010.00725.x · Cited by 6,699
Selecting thresholds of occurrence in the prediction of species distributions
Liu, C., Berry, P. M., Dawson, T. P., & Pearson, R. G. (2005) · Ecography · doi:10.1111/j.0906-7590.2005.03957.x · Cited by 2,701
Species Distribution Modeling and Ecological Niche Modeling: Getting the Concepts Right
Peterson, A. T., & Soberón, J. (2012) · Natureza & Conservação · doi:10.4322/natcon.2012.019 · Cited by 702
Calosi, P., Bilton, D. T., Spicer, J. I., Votier, S. C., & Atfield, A. (2010) · Journal of Animal Ecology · doi:10.1111/j.1365-2656.2009.01611.x · Cited by 332
Cited by
Want to model a species niche? A step-by-step guideline on correlative ecological niche modelling
Sillero, N., Arenas-Castro, S., Enriquez‐Urzelai, U., Vale, C. G., Sousa-Guedes, D., Martínez-Freiría, F., Real, R., & Barbosa, A. M. (2021) · Ecological Modelling · doi:10.1016/j.ecolmodel.2021.109671 · Cited by 456
Collinearity in ecological niche modeling: Confusions and challenges
Feng, X., Park, D. S., Liang, Y., Pandey, R., & Papeş, M. (2019) · Ecology and Evolution · doi:10.1002/ece3.5555 · Cited by 438
Species Distribution Modeling for Machine Learning Practitioners: A Review
Beery, S., Cole, E., Parker, J., Perona, P., & Winner, K. (2021) · ACM SIGCAS Conference on Computing and Sustainable Societies · doi:10.1145/3460112.3471966 · Cited by 100
Metadata
- Authors
- De Marco, P., & Nóbrega, C. C.
- Venue
- PLOS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2018-09-11
- Volume
- 13
- Issue
- 9
- Pages
- e0202403
- ISSN
- 1932-6203 (ISSN-L)
- OpenAlex
- W2891881295
- Cited by
- 479
- References
- 5
- FWCI
- 23.34
- Type
- journal article
- Language
- en
- Open access
- gold
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