Comparable respiratory activity in attached and suspended human fibroblasts
Open accessAbstract
Measurement of oxygen consumption of cultured cells is widely used for diagnosis of mitochondrial diseases, drug testing, biotechnology, and toxicology. Fibroblasts are cultured in monolayers, but physiological measurements are carried out in suspended or attached cells. We address the question whether respiration differs in attached versus suspended cells using multiwell respirometry (Agilent Seahorse XF24) and high-resolution respirometry (Oroboros O2k), respectively. Respiration of human dermal fibroblasts measured in culture medium was baseline-corrected for residual oxygen consumption and expressed as oxygen flow per cell. No differences were observed between attached and suspended cells in ROUTINE respiration of living cells and LEAK respiration obtained after inhibition of ATP synthase by oligomycin. The electron transfer capacity was higher in the O2k than in the XF24. This could be explained by a limitation to two uncoupler titrations in the XF24 which led to an underestimation compared to multiple titration steps in the O2k. A quantitative evaluation of respiration measured via different platforms revealed that short-term suspension of fibroblasts did not affect respiratory activity and coupling control. Evaluation of results obtained by different platforms provides a test for reproducibility beyond repeatability. Repeatability and reproducibility are required for building a validated respirometric database.
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Respiratory rates measured at basal condition were similar between suspended and attached astrocytes.
“Of note, the respiratory rates measured at basal condition were similar between suspended and attached astrocytes (Figure 2B,D vs. Figure 3A,B), in line with previous observations on human fibroblasts [46].”
From Proliferating Astrocytes in Primary Culture Do Not Depend upon Mitochondrial Respiratory Complex I Activity or Oxidative Phosphorylation (2023) · cites this paper as [46]
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Cites
Benecke, B.-J., Ben-Ze'ev, A., & Penman, S. (1978) · Cell · doi:10.1016/0092-8674(78)90347-1 · Cited by 291 · see citing works
Gnaiger, E. (2001) · Respiration Physiology · doi:10.1016/s0034-5687(01)00307-3 · Cited by 280 · see citing works
Self-citationShen, C. F., Guilbault, C., Li, X., Elahi, S. M., Ansorge, S., Kamen, A., & Gilbert, R. (2019) · Vaccine · doi:10.1016/j.vaccine.2019.07.003 · Cited by 75 · cited 1× · see citing works
“These include metabolic profiling [1], substrate diffusion [2], cell morphology and rheology [3], macrophage adherence [2], suspension culture as mimetic of circulating tumor cells [4], metastatic potential [4], therapeutic cell reimplantation, and cell culture biotechnology and pharmacology [5].”
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Research works printed but not linked: 23
- [1]Lazdins JK, Koech DK, Karnovsky ML. Oxidation of glucose by mouse peritoneal macrophages: a comparison of suspensions and monolayers. J Cell Physiol. 1980 Nov; 105(2): 191– 6. doi: 10.1002/jcp.1041050202 6780573 · DOI
- [2]Pofit JF, Strauss PR. Membrane transport by macrophages in suspension and adherent to glass. J Cell Physiol. 1977 Aug; 92(2): 249– 55. doi: 10.1002/jcp.1040920213 881435 · DOI
- [3]Harrison CJ, Allen TD. Cell surface morphology after trypsinisation depends on initial cell shape. Differentiation. 1979; 15(1): 61– 6. doi: 10.1111/j.1432-0436.1979.tb01035.x 527772 · DOI
- [4]Park JY, Jeong AL, Joo HJ, Han S, Kim SH, Kim HY, et al. Development of suspension cell culture model to mimic circulating tumor cells. Oncotarget. 2017 Dec 7; 9(1): 622– 640. doi: 10.18632/oncotarget.23079 29416640 PMC5787494 · DOI
- [6]Yépez VA, Kremer LS, Iuso A, Gusic M, Kopajtich R, Koňaříková E, et al. OCR-Stats: Robust estimation and statistical testing of mitochondrial respiration activities using Seahorse XF Analyzer. PLoS One. 2018 Jul 11; 13(7): e0199938. doi: 10.1371/journal.pone.0199938 29995917 PMC6040740 · DOI
- [7]Danhelovska T, Kolarova H, Zeman J, Hansikova H, Vaneckova M, Lambert L, et al. Multisystem mitochondrial diseases due to mutations in mtDNA-encoded subunits of complex I. BMC Pediatr. 2020 Jan 29; 20(1): 41. doi: 10.1186/s12887-020-1912-x 31996177 PMC6988306 · DOI
- [8]Burska D, Stiburek L, Krizova J, Vanisova M, Martinek V, Sladkova J, et al. Homozygous missense mutation in UQCRC2 associated with severe encephalomyopathy, mitochondrial complex III assembly defect and activation of mitochondrial protein quality control. Biochim Biophys Acta Mol Basis Dis. 2021 Aug 1; 1867(8): 166147. doi: 10.1016/j.bbadis.2021.166147 33865955 · DOI
- [9]Ye F, Hoppel CL. Measuring oxidative phosphorylation in human skin fibroblasts. Anal Biochem. 2013; 437: 52– 8. doi: 10.1016/j.ab.2013.02.010 23462540 · DOI
- [11]Farmer SR, Ben-Ze’ev A, Benecke BJ, Penman S. (1978). Altered translatability of messenger RNA from suspended anchorage-dependent fibroblasts: reversal upon cell attachment to a surface. Cell. 1978 Oct 1; 15(2): 627– 37. doi: 10.1016/0092-8674(78)90031-4 719755 · DOI
- [12]Wu M, Neilson A, Swift AL, Moran R, Tamagnine J, Parslow D, et al. Multiparameter metabolic analysis reveals a close link between attenuated mitochondrial bioenergetic function and enhanced glycolysis dependency in human tumor cells. Am J Physiol Cell Physiol. 2007 Jan; 292(1): C125– 36. doi: 10.1152/ajpcell.00247.2006 16971499 · DOI
- [13]Doerrier C, Garcia-Souza LF, Krumschnabel G, Wohlfarter Y, Mészáros AT, Gnaiger E. High-Resolution FluoRespirometry and OXPHOS Protocols for Human Cells, Permeabilized Fibers from Small Biopsies of Muscle, and Isolated Mitochondria. Methods Mol Biol. 2018; 1782: 31– 70. doi: 10.1007/978-1-4939-7831-1_3 29850993 · DOI
- [14]Gnaiger E. Mitochondrial pathways and respiratory control. An introduction to OXPHOS analysis (5th ed.). Bioenerg Commun. 2020; 2, 112 pp. doi: 10.26124/bec:2020–0002 · DOI
- [15]Zhang J, Nuebel E, Wisidagama DR, Setoguchi K, Hong JS, Van Horn CM, et al. Measuring energy metabolism in cultured cells, including human pluripotent stem cells and differentiated cells. Nat Protoc. 2012 May 10; 7(6): 1068– 85. doi: 10.1038/nprot.2012.048 22576106 PMC3819135 · DOI
- [16]Gnaiger E. Polarographic oxygen sensors, the oxygraph and high-resolution respirometry to assess mitochondrial function. In: Mitochondrial dysfunction in drug-induced toxicity (Dykens JA, Will Y, eds) John Wiley & Sons, Inc, Hoboken, NJ, 2008; 327– 52. doi: 10.1002/9780470372531.ch12 · DOI
- [19]Scandurra FM, Gnaiger E. Cell respiration under hypoxia: facts and artefacts in mitochondrial oxygen kinetics. Adv. Exp. Med. 2010; 662: 7– 25. doi: 10.1007/978-1-4419-1241-1_2 20204766 · DOI
- [20]Komlódi T, Sobotka O, Gnaiger E. Facts and artefacts on the oxygen dependence of hydrogen peroxide production using Amplex UltraRed. Bioenerg Commun. 2021; 4. doi: 10.26124/bec:2020–0004 · DOI
- [21]Hutter E, Renner K, Pfister G, Stöckl P, Jansen-Dürr P, Gnaiger E. Senescence-associated changes in respiration and oxidative phosphorylation in primary human fibroblasts. Biochem J. 2004 Jun 15; 380(Pt 3): 919– 28. doi: 10.1042/BJ20040095 15018610 PMC1224220 · DOI · Paper page
- [22]Gnaiger E.– MitoEAGLE task group. Mitochondrial physiology. Bioenergetics Communication, 2020; 1, 1– 44. doi: 10.26124/bec:2020-0001.v1 · DOI
- [24]Gnaiger, E. (2021) The elementary unit—canonical reviewer’s comments on: Bureau International des Poids et Mesures (2019) The International System of Units (SI) 9th ed. MitoFit Preprints 2020.4.v2 [preprint]. Available from: doi: 10.26124/mitofit:200004.v2 · DOI
- [25]Gnaiger E. Bioenergetic cluster analysis–mitochondrial respiratory control in human fibroblasts. MitoFit Preprints [preprint]. 2021; 8. doi: 10.26124/mitofit:2021–0008 · DOI
- [26]Abelson HT, Johnson LF, Penman S, Green H. Changes in RNA in relation to growth of the fibroblast: II. The lifetime of mRNA, rRNA, and tRNA in resting and growing cells. Cell. 1974 Apr 01; 1(40), 161– 5. doi: 10.1016/0092-8674(74)90107-X · DOI
- [27]Ben-Ze’ev A., Reiss R., Bendori R., Gorodecki B. (1990). Transient induction of vinculin gene expression in 3T3 fibroblasts stimulated by serum-growth factors. Cell Regulation. 1990 Aug 1; 1(9), 621– 6. doi: 10.1091/mbc.1.9.621 2127699 PMC361624 · DOI
- [28]Benecke BJ, Ben-Ze’ev A, Penman S. The regulation of RNA metabolism in suspended and reattached anchorage-dependent 3T6 fibroblasts. J Cell Physiol. 1980 May; 103(2): 247– 54. doi: 10.1002/jcp.1041030209 6160160 · DOI
Cited by
Sorted by citations
Silva, E. A., Dalla Costa, A. P., Ruas, J. S., Siqueira-Santos, E. S., Francisco, A., & Castilho, R. F. (2023) · Cells · doi:10.3390/cells12050683 · Cited by 5 · see citing works
- Authors
- Zdrazilova, L., Hansikova, H., & Gnaiger, E.
- Affiliations
- Oroboros Instruments (Austria) (AT)
- Corresponding author
- Gnaiger, Erich
- Venue
- PLOS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2022-03-03
- Volume
- 17
- Issue
- 3
- Pages
- e0264496
- ISSN
- 1932-6203 (ISSN-L)
- PMC
- PMC8893708
- OpenAlex
- W4214825164
- Cited by
- 28
- References
- 3
- Citations by year
- 2026: 5 · 2025: 6 · 2024: 8 · 2023: 7 · 2022: 2
- FWCI
- 1.88
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- PLoS ONE (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- European Union’s Horizon 2020 research and innovation program (859770, NextGen-O2k project)
- Institutional project of Charles University (GAUK110119, SVV–UK 260367)
- Ministry of Health of the Czech Republic (NV19-07-00149)
- COST Action (CA15203 MitoEAGLE)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Mitochondrial Function and Pathology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer, Hypoxia, and Metabolism
- Physical Sciences › Chemistry › Physical and Theoretical Chemistry › thermodynamics and calorimetric analyses
- Keywords
- cellular respiration, human dermal fibroblasts, high-resolution respirometry, mitochondrial function, electron transfer capacity, oligomycin, ATP synthase inhibition, reproducibility
- MeSH terms
- Fibroblasts, Humans, Oxidative Phosphorylation, Oxygen Consumption, Reproducibility of Results, Cell Respiration
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