Transportin 3 promotes a nuclear maturation step required for efficient HIV-1 integration
Open accessAbstract
The HIV/AIDS pandemic is a major global health threat and understanding the detailed molecular mechanisms of HIV replication is critical for the development of novel therapeutics. To replicate, HIV-1 must access the nucleus of infected cells and integrate into host chromosomes, however little is known about the events occurring post-nuclear entry but before integration. Here we show that the karyopherin Transportin 3 (Tnp3) promotes HIV-1 integration in different cell types. Furthermore Tnp3 binds the viral capsid proteins and tRNAs incorporated into viral particles. Interaction between Tnp3, capsid and tRNAs is stronger in the presence of RanGTP, consistent with the possibility that Tnp3 is an export factor for these substrates. In agreement with this interpretation, we found that Tnp3 exports from the nuclei viral tRNAs in a RanGTP-dependent way. Tnp3 also binds and exports from the nuclei some species of cellular tRNAs with a defective 3'CCA end. Depletion of Tnp3 results in a re-distribution of HIV-1 capsid proteins between nucleus and cytoplasm however HIV-1 bearing the N74D mutation in capsid, which is insensitive to Tnp3 depletion, does not show nucleocytoplasmic redistribution of capsid proteins. We propose that Tnp3 promotes HIV-1 infection by displacing any capsid and tRNA that remain bound to the pre-integration complex after nuclear entry to facilitate integration. The results also provide evidence for a novel tRNA nucleocytoplasmic trafficking pathway in human cells.
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It has been proposed that the nuclear export of CA and tRNAs displaces them from the viral DNA, exposing the DNA to IN and other factors necessary for integration.
“It has been proposed that the nuclear export of CA and tRNAs displaces them from the viral DNA, exposing the DNA to IN and other factors necessary for integration (120).”
From Role of host tRNAs and aminoacyl-tRNA synthetases in retroviral replication (2019) · cites this paper as [120]
The Results section (‘Tnp3 is an export factor for CA’; page not available) proposes that Tnp3 promotes a maturation step by possibly displacing CA and tRNAs still bound to the pre-integration complex. The cited passages do not say that this exposes viral DNA to integrase (IN) or other factors, so that specific mechanism is not supported by our copy. (LLM, conf=0.82)
Experimental — accuracy not yet measuredTnp3 interacts with HIV-1 CA and tRNAs lacking 3' CCA ends in the nucleus and facilitates their nuclear export.
“Indeed, Tnp3 interacts with HIV-1 CA and tRNAs lacking 3Ј CCA ends in the nucleus and facilitates their nuclear export (120).”
From Role of host tRNAs and aminoacyl-tRNA synthetases in retroviral replication (2019) · cites this paper as [120]
Transportin 3 (Tnp3) is required for efficient HIV-1 integration.
“Transportin 3 (Tnp3), a host RNA-binding protein that participates in nucleocytoplasmic transport of nucleic acids and proteins, is required for efficient HIV-1 integration (120).”
From Role of host tRNAs and aminoacyl-tRNA synthetases in retroviral replication (2019) · cites this paper as [120]
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Cites
In Vivo Gene Delivery and Stable Transduction of Nondividing Cells by a Lentiviral Vector
Naldini, L., Blömer, U., Gallay, P., Ory, D., Mulligan, R., Gage, F. H., Verma, I. M., & Trono, D. (1996) · Science · doi:10.1126/science.272.5259.263 · Cited by 4,903 · see citing works
Identification of host proteins required for HIV infection through a functional genomic screen
Brass, A. L., Dykxhoorn, D. M., Benita, Y., Yan, N., Engelman, A., Xavier, R. J., Lieberman, J., & Elledge, S. J. (2008) · Science · doi:10.1126/science.1152725 · Cited by 1,449 · cited 6× · see citing works
“Depletion of Tnp3 in HeLa cells resulted in ,7 fold inhibition of infection with the best siRNA (Figure 2A, 2B) in agreement with previous reports [18,20].”
BackgroundResultInfluentialCapsid Is a Dominant Determinant of Retrovirus Infectivity in Nondividing Cells
Yamashita, M., & Emerman, M. (2004) · Journal of Virology · doi:10.1128/jvi.78.11.5670-5678.2004 · Cited by 325 · see citing works
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Hulme, A. E., Perez, O., & Hope, T. J. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1014522108 · Cited by 276 · see citing works
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HIV-1 uncoats in the nucleus near sites of integration
Burdick, R. C., Li, C., Munshi, M., Rawson, J. M. O., Nagashima, K., Hu, W.-S., & Pathak, V. K. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1920631117 · Cited by 313 · see citing works
“Some previous studies have suggested that low levels of CA are associated with nuclear complexes (14, 15, 17, 19, 20, 22) and are thought to influence integration site selection (23, 24); in these studies, the nuclear CA amounts may have been underestimated because of reduced CA epitope accessibility (25).”
BackgroundMatreyek, K. A., Yücel, S. S., Li, X., & Engelman, A. (2013) · PLoS Pathogens · doi:10.1371/journal.ppat.1003693 · Cited by 280 · see citing works
Bejarano, D. A., Peng, K., Laketa, V., Börner, K., Jost, K. L., Lucic, B., Glass, B., Lusic, M., Müller, B., & Kräusslich, H.-G. (2019) · eLife · doi:10.7554/elife.41800 · Cited by 197 · see citing works
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Role of host tRNAs and aminoacyl-tRNA synthetases in retroviral replication
Jin, D., & Musier-Forsyth, K. (2019) · Journal of Biological Chemistry · doi:10.1074/jbc.rev118.002957 · Cited by 67 · see citing works
“It has been proposed that the nuclear export of CA and tRNAs displaces them from the viral DNA, exposing the DNA to IN and other factors necessary for integration (120).”
BackgroundLi, W., Singh, P. K., Sowd, G. A., Bedwell, G. J., Jang, S., Achuthan, V., Oleru, A. V., Wong, D., Fadel, H. J., Lee, K., et al. (2020) · mBio · doi:10.1128/mbio.02254-20 · Cited by 64 · see citing works
- Authors
- Zhou, L., Sokolskaja, E., Jolly, C., James, W., Cowley, S. A., & Fassati, A.
- Affiliations
- University College London (GB)
- University of Oxford (GB)
- Corresponding author
- Fassati, Ariberto
- Venue
- PLoS Pathogens
- Publisher
- Public Library of Science (PLoS)
- Published
- 2011-08-25
- Volume
- 7
- Issue
- 8
- Pages
- e1002194
- ISSN
- 1553-7366 (ISSN-L)
- 1553-7374
- PMC
- PMC3161976
- OpenAlex
- W2022159627
- Cited by
- 130
- References
- 4
- Citations by year
- 2026: 2 · 2025: 4 · 2024: 3 · 2023: 3 · 2022: 4 · 2021: 16 · 2020: 11 · 2019: 8 · 2018: 7 · 2017: 11 · 2016: 7 · 2015: 9 · 2014: 10 · 2013: 14 · 2012: 19
- FWCI
- 5.70
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS Pathogens (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- UCL Discovery (University College London) (submittedVersion)
- Figshare (submittedVersion, cc-by)
- Funders
- Wellcome Trust
- Topics
- Life Sciences › Immunology and Microbiology › Virology › HIV Research and Treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nuclear Structure and Function
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Virus-based gene therapy research
- Keywords
- HIV-1 integration, karyopherins, preintegration complex, capsid protein, tRNA export, RanGTP, nucleocytoplasmic trafficking, nuclear maturation, HIV replication
- MeSH terms
- Cell Line, Cell Nucleus, Cloning, Molecular, DNA, Viral, Humans, Mutation, Protein Binding, RNA, Transfer, HIV-1, Virus Integration, Active Transport, Cell Nucleus, beta Karyopherins, Capsid Proteins
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