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Determinants of pegivirus persistence, cross-species infection, and adaptation in the laboratory mouse
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Abstract
Viruses capable of causing persistent infection have developed sophisticated mechanisms for evading host immunity, and understanding these processes can reveal novel features of the host immune system. One such virus, human pegivirus (HPgV), infects ~15% of the global human population, but little is known about its biology beyond the fact that it does not cause overt disease. We passaged a pegivirus isolate of feral brown rats (RPgV) in immunodeficient laboratory mice to develop a mouse-adapted virus (maPgV) that established persistent high-titer infection in a majority of wild-type laboratory mice. maRPgV viremia was detected in the blood of mice for >300 days without apparent disease, closely recapitulating the hallmarks of HPgV infection in humans. We found a pro-viral role for type-I interferon in chronic infection; a lack of PD-1-mediated tolerance to PgV infection; and multiple mechanisms by which PgV immunity can be achieved by an immunocompetent host. These data indicate that the PgV immune evasion strategy has aspects that are both common and unique among persistent viral infections. The creation of maPgV represents the first PgV infection model in wild-type mice, thus opening the entire toolkit of the mouse host to enable further investigation of this persistent RNA virus infections.
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Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
Accurate structure prediction of biomolecular interactions with AlphaFold 3
Abramson, J., Adler, J., Dunger, J., Evans, R., Green, T., Pritzel, A., Ronneberger, O., Willmore, L., Ballard, A. J., Bambrick, J., et al. (2024) · Nature · doi:10.1038/s41586-024-07487-w · Cited by 15,861
Flagged first, then by citations
Research works printed but not linked: 43
- TS Postler, 2023, Renaming of the genus Flavivirus to Orthoflavivirus and extension of binomial species names within the family Flaviviridae, Arch Virol, 168, 224, 10.1007/s00705-023-05835-1 · DOI
- JT Stapleton, 2011, The GB viruses: a review and proposed classification of GBV-A, GBV-C (HGV), and GBV-D in genus Pegivirus within the family Flaviviridae., The Journal of general virology, 92, 233, 10.1099/vir.0.027490-0 · DOI
- M Tacke, 1997, Humoral immune response to the E2 protein of hepatitis G virus is associated with long-term recovery from infection and reveals a high frequency of hepatitis G virus exposure among healthy blood donors, Hepatology, 26, 1626, 10.1002/hep.510260635 · DOI
- W Zhang, 2006, Effect of early and late GB virus C viraemia on survival of HIV-infected individuals: a meta-analysis., HIV medicine., 7, 173, 10.1111/j.1468-1293.2006.00366.x · DOI
- CF Williams, 2004, Persistent GB virus C infection and survival in HIV-infected men, The New England journal of medicine, 350, 981, 10.1056/NEJMoa030107 · DOI
- J Xiang, 2001, Effect of coinfection with GB virus C on survival among patients with HIV infection, The New England journal of medicine, 345, 707, 10.1056/NEJMoa003364 · DOI
- N Bhattarai, 2012, GB virus C: the good boy virus, Trends in microbiology, 20, 124, 10.1016/j.tim.2012.01.004 · DOI
- A Fama, 2020, Human Pegivirus Infection and Lymphoma Risk: A Systematic Review and Meta-analysis, Clin Infect Dis, 71, 1221, 10.1093/cid/ciz940 · DOI
- MBA Oldstone, 2009, Anatomy of viral persistence., PLoS Pathog., 5, e1000523, 10.1371/journal.ppat.1000523 · DOI
- MBA Oldstone, 1989, Viral persistence., Cell, 56, 517, 10.1016/0092-8674(89)90573-4 · DOI
- J Bukh, 1998, Experimental infection of chimpanzees with hepatitis G virus and genetic analysis of the virus, J Infect Dis, 177, 855, 10.1086/515255 · DOI
- AL Bailey, 2015, Durable sequence stability and bone marrow tropism in a macaque model of human pegivirus infection, Sci Transl Med, 7, 10.1126/scitranslmed.aab3467 · DOI
- K El Omari, 2013, Structure of a pestivirus envelope glycoprotein E2 clarifies its role in cell entry., Cell Rep., 3, 30, 10.1016/j.celrep.2012.12.001 · DOI
- Y Li, 2013, Crystal structure of glycoprotein E2 from bovine viral diarrhea virus, Proc Natl Acad Sci U S A, 110, 6805, 10.1073/pnas.1300524110 · DOI
- L Kong, 2013, Hepatitis C virus E2 envelope glycoprotein core structure, Science, 342, 1090, 10.1126/science.1243876 · DOI
- AG Khan, 2014, Structure of the core ectodomain of the hepatitis C virus envelope glycoprotein 2, Nature, 509, 381, 10.1038/nature13117 · DOI
- MR Oliver, 2023, Structures of the Hepaci-, Pegi-, and Pestiviruses envelope proteins suggest a novel membrane fusion mechanism, PLoS Biol, 21, e3002174, 10.1371/journal.pbio.3002174 · DOI
- M Mirdita, 2022, ColabFold: making protein folding accessible to all., Nat Methods, 19, 679, 10.1038/s41592-022-01488-1 · DOI · Paper page
- RB Denman, 1993, Using RNAFOLD to predict the activity of small catalytic RNAs, Biotechniques, 15, 1090
- SE Hickson, 2024, RNA structures within Venezuelan equine encephalitis virus E1 alter macrophage replication fitness and contribute to viral emergence., 10.1101/2024.04.09.588743 · DOI
- JM Jubel, 2020, The Role of PD-1 in Acute and Chronic Infection., Front Immunol., 11, 487, 10.3389/fimmu.2020.00487 · DOI
- CU Blank, 2019, Defining ‘T cell exhaustion.’, Nat Rev Immunol, 19, 665, 10.1038/s41577-019-0221-9 · DOI · Paper page
- AH Sharpe, 2018, The diverse functions of the PD1 inhibitory pathway, Nat Rev Immunol, 18, 153, 10.1038/nri.2017.108 · DOI
- DL Barber, 2006, Restoring function in exhausted CD8 T cells during chronic viral infection, Nature, 439, 682, 10.1038/nature04444 · DOI
- M Matloubian, 1994, CD4+ T cells are required to sustain CD8+ cytotoxic T-cell responses during chronic viral infection, J Virol, 68, 8056, 10.1128/jvi.68.12.8056-8063.1994 · DOI
- KA Berggren, 2020, Animal Models Used in Hepatitis C Virus Research., Int J Mol Sci, 21, 3869, 10.3390/ijms21113869 · DOI
- E Billerbeck, 2017, Mouse models of acute and chronic hepacivirus infection, Science, 357, 204, 10.1126/science.aal1962 · DOI
- AL Bailey, 2017, Pegivirus avoids immune recognition but does not attenuate acute-phase disease in a macaque model of HIV infection., PLoS Pathog, 13, e1006692, 10.1371/journal.ppat.1006692 · DOI
- JT Stapleton, 2022, Human Pegivirus Type 1: A Common Human Virus That Is Beneficial in Immune-Mediated Disease?, Front Immunol., 13, 887760, 10.3389/fimmu.2022.887760 · DOI
- LM Snell, 2015, New insights into type I interferon and the immunopathogenesis of persistent viral infections, Curr Opin Immunol, 34, 91, 10.1016/j.coi.2015.03.002 · DOI
- S Lukhele, 2019, Type I interferon signaling, regulation and gene stimulation in chronic virus infection, Semin Immunol, 43, 101277, 10.1016/j.smim.2019.05.001 · DOI
- G Schönrich, 2019, The PD-1/PD-L1 Axis and Virus Infections: A Delicate Balance., Front Cell Infect Microbiol, 9, 207, 10.3389/fcimb.2019.00207 · DOI
- S Jo, 2008, CHARMM-GUI: A web-based graphical user interface for CHARMM, J Comput Chem, 29, 1859, 10.1002/jcc.20945 · DOI · Paper page
- EC Meng, 2023, UCSF ChimeraX: Tools for structure building and analysis, Protein Science, 32, e4792, 10.1002/pro.4792 · DOI
- JR Teijaro, 2013, Persistent LCMV infection is controlled by blockade of type I interferon signaling, Science, 340, 207, 10.1126/science.1235214 · DOI · Paper page
- J Quick, 2017, Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples., Nat Protoc., 12, 1261, 10.1038/nprot.2017.066 · DOI · Paper page
- T Koressaar, 2007, Enhancements and modifications of primer design program Primer3, Bioinformatics, 23, 1289, 10.1093/bioinformatics/btm091 · DOI
- A Untergasser, 2012, Primer3—new capabilities and interfaces, Nucleic Acids Research, 40, e115, 10.1093/nar/gks596 · DOI
- B Langmead, 2012, Fast gapped-read alignment with Bowtie 2., Nat Methods, 9, 357, 10.1038/nmeth.1923 · DOI · Paper page
- B Langmead, 2019, Scaling read aligners to hundreds of threads on general-purpose processors, Bioinformatics, 35, 421, 10.1093/bioinformatics/bty648 · DOI
- PZ Johnson, 2023, RNAcanvas: interactive drawing and exploration of nucleic acid structures, Nucleic Acids Research, 51, W501, 10.1093/nar/gkad302 · DOI
- P Bankhead, 2017, QuPath: Open source software for digital pathology image analysis., Sci Rep, 7, 16878, 10.1038/s41598-017-17204-5 · DOI · Paper page
- Adam Bailey, 2024, Determinants of Pegivirus persistence, cross-species infection, and adaptation in the laboratory mouse [Dataset]., Dryad
Metadata
- Authors
- Nennig, K., Murthy, S., Maloney, S., Shaw, T. M., Sharobim, M., Matkovic, E., Fadiran, S., Larsen, M., Ramuta, M. D., Kim, A. S., Teijaro, J. R., Grove, J., Stremlau, M., Sharma, H., Trivedi, S., Blum, M. J., O’Connor, D. H., Hyde, J. L., Stapleton, J. T., Kapoor, A., & Bailey, A. L.
- Affiliations
- University of Wisconsin–Madison (US)
- Nationwide Children's Hospital (US)
- Scripps Research Institute (US)
- MRC University of Glasgow Centre for Virus Research (GB)
- Johns Hopkins University (US)
- University of Tennessee at Knoxville (US)
- University of Washington (US)
- University of Iowa (US)
- Corresponding author
- Bailey, Adam L.
- ORCID
- Venue
- PLOS Pathogens
- Publisher
- Public Library of Science (PLoS)
- Published
- 2024-08-28
- Volume
- 20
- Issue
- 8
- Pages
- e1012436
- ISSN
- 1553-7366 (ISSN-L)
- 1553-7374
- PMC
- PMC11355568
- OpenAlex
- W4401945901
- Cited by
- 2
- References
- 2
- Citations by year
- 2026: 1 · 2025: 1
- FWCI
- 0.33
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- PLoS Pathogens (publishedVersion, cc-by)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam) (acceptedVersion, cc-by-sa)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- Funders
- Department of Pathology and Laboratory Medicine,the School of Medicine, Public Health at the University of Wisconsin–Madison
- Open Philanthropy and the Life Sciences Research Foundation
- Wellcome Trust and Royal Society (Sir Henry Dale Fellowship (107653/Z/15/Z))
- MRC-University of Glasgow Centre for Virus Research (Medical Research Council/UKRI (MC_UU_00034/1)
- National Institute of General Medical Sciences (NIH training grant (T32GM135119))
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › interferon and immune responses
- Health Sciences › Medicine › Hepatology › Hepatitis C virus research
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Virus Infections Studies
- Keywords
- Pegivirus, hepatitis G virus, viral persistence, mouse-adapted virus, cross-species infection, type I interferon, PD-1, immune evasion, viremia, immunodeficient mice, RNA virus infection, host immune response
- MeSH terms
- Persistent Infection, Animals, Humans, Mice, Inbred C57BL, Flaviviridae, Flaviviridae Infections, Mice, Rats, Immune Evasion
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