Integrative Multi-Omics Approaches in Cancer Research: From Biological Networks to Clinical Subtypes

Heo, Yong Jin, Hwa, Chanwoong, Lee, Gang-Hee, Park, Jae-Min, An, Joon-Yong·2021·Molecules and Cells

Cited by (295)

Items 101–200 of 295

  1. Integrative Multiomics and Drug Sensitivity Profiling Reveal Potential Biomarkers and Therapeutic Strategies in Pediatric Solid Tumors
    Dina ElHarouni, Rosa D. Hernansaiz-Ballesteros, Heike Peterziel, Gnana Prakash Balasubramanian, Christopher Previti, Kathrin Schramm, Mirjam Blattner-Johnson, Rolf Kabbe, Barbara C. Jones, Sina Oppermann et al. · 2025 · Cancer Research
  2. Advanced segmentation method for integrating multi-omics data for early cancer detection
    S Sangeetha, Sandeep Kumar Mathivanan, M Azath, Ravinder Beniwal, Naim Ahmad, Wade Ghribi, Saurav Mallik · 2025 · Egyptian Informatics Journal
  3. SetQuence & SetOmic: Deep set transformers for whole genome and exome tumour analysis
    Neringa Jurenaite, Daniel León-Periñán, Veronika Donath, Sunna Torge, René Jäkel · 2023 · Biosystems
  4. Role of systems biology and multi-omics analyses in delineating spatial interconnectivity and temporal dynamicity of ER stress mediated cellular responses
    Priyanka Mallick, Sebabrata Maity, Oishee Chakrabarti, Saikat Chakrabarti · 2022 · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research
  5. MetaRelSubNetVis: Referenceable network visualizations based on integrated patient data with group-wise comparison
    Florian Auer, Simone Mayer, Frank Krämer · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  6. OCR: OmniNet-Fusion: A hybrid attention-based CNN-RNN model for multi-omics integration in precision cancer drug response prediction
    Syed Mohammed Azmal, Sajja Tulasi Krishna · 2025 · Computational Biology and Chemistry
  7. Metabolic Vulnerability Index and Atherosclerosis Incident: A Prospective Cohort Study From the UK Biobank
    Xiangliang Liu, Xinqiao Chen, Wang Yang, Yuwei He, Yuting Liu, Yuguang Li, Naifei Chen, Jiuwei Cui · 2025 · Journal of the American Heart Association
  8. Advances in LC–MS strategies for comprehensive characterization and quantification of antibody-drug conjugates in preclinical and clinical settings
    Devendra Kumar, Neerja Trivedi · 2025 · Journal of Chromatography A
  9. Multi-omics integration in deciphering non-small cell lung cancer drug resistance: current status, challenges, and future prospects
    Jidong Miao, Wenqiang Guan, Jing Wang, Huiying Gong, Qian Xie, Yang Gao · 2026 · Hereditas
  10. A review of multi-omics integration techniques across five machine learning method families
    Adedayo Olowolayemo, Amina Souag, Konstantinos Sirlantzis, Scott Turner, Cornelia M. Wilson · 2026 · Bioinformatics Advances
  11. The Application of Omics Technologies in Type II Diabetes Mellitus Research
    Abdullah Al Sultan, Zahra Rattray, Nicholas J. W. Rattray · 2025 · Current Diabetes Reviews
  12. Technological innovations promote cancer stem cell-based translational research
    Zijiao Yang, Wenyu Liao, Weizhong Wang, Wengui Shi, Zuoyi Jiao, Zuoren Yu · 2025 · Cancer Letters
  13. Telomere maintenance meets cancer metabolism: Mechanistic insights and clinical opportunities
    Ji‐Yong Sung, Kihwan Hwang · 2025 · Critical Reviews in Oncology/Hematology
  14. As a Potential Predictor of Pan-Cancer, UBE2S is Related to Tumor-Associated Macrophage Infiltration
    Haodi Yue, Jialin Wang, Siyu Hou, Mengjun Zhang · 2023 · Future Oncology
  15. Molecular and modular intricacies of precision oncology
    Ravneet Chhabra · 2024 · Frontiers in Immunology
  16. Newer Biomarkers in Gallbladder Carcinoma: A Scoping Review
    Amitabh Kumar Upadhyay, Deb Sanjay Nag, Sanghamitra Jena, Neetesh Sinha, Dona Lodh · 2024 · Cureus
  17. Precision Oncology, Signaling Pathways Reprogramming and Targeted Therapy: A Holistic Approach to Molecular Cancer Therapeutics
    Manish Kumar · 2025
  18. Augmented kurtosis-based projection pursuit: a novel, advanced machine learning approach for multi-omics data analysis and integration
    Fabian Bong, Ibrahim Ahmed, Nithya Ramakrishnan, Karla N. Valenzuela‐Valderas, Peter D. Wentzell, Jasmine Barra, Tobias K. Karakach · 2025 · Nucleic Acids Research
  19. Recent advancements in artificial intelligence - driven breast cancer molecular subtypes classification using multi-omics: A comprehensive review
    Sajid Shah, Azurah A. Samah, Syed Hamid Hussain Madni, Siti Zaiton Mohd Hashim, Muhammad Faheem · 2026 · Engineering Applications of Artificial Intelligence
  20. Advancements in bone marrow biopsy: the role of omics and artificial intelligence in hematologic diagnostics
    Maryam Alwahaibi, Nasar Alwahaibi · 2026 · Frontiers in Medicine
  21. Research and application of omics and artificial intelligence in cancer
    Ye Zhang, Wenwen Ma, Zhiqiang Huang, Kun Liu, Zhaoyi Feng, Lei Zhang, Dezhi Li, Tianlu Mo, Qing Liu · 2024 · Physics in Medicine and Biology
  22. Diagnosis progress of carcinoma of unknown primary
    Yun Qiao, Mei Wang, Kaiyuan Hui, Xiaodong Jiang · 2024 · Frontiers in Oncology
  23. Multi-omics reveal inhibitory effects of Protopanaxadiol on metastasis through PI3K-Akt and MAPK pathway in human cervical cancer HeLa cells
    Rui Lü, Juanjuan Liu, Kiran Thakur, Hui Cao, Juan Carlos Mejuto, Jesús Simal‐Gándara, Jianguo Zhang · 2024 · Food Bioscience
  24. Proteomics and Its Applications in Cancers 2.0
    Stanislav Naryzhny · 2024 · International Journal of Molecular Sciences
  25. Cancer Subtyping Through Multi-Omics Feature Selection: A Review of Methods and the Superiority of Variational Autoencoders
    Muneeba Afzal Mukhdoomi, Manzoor Ahmad Chachoo · 2024 · IEEE Delhi Section Conference (DELCON)
  26. Systematic identification of cancer pathways and potential drugs for intervention through multi-omics analysis
    Tuan Xu, Deborah K. Ngan, Wei Zheng, Ruili Huang · 2025 · The Pharmacogenomics Journal
  27. Phytoflavonoids as alternative therapeutic effect for melanoma: Integrative Network pharmacology, molecular dynamics and drug-likeness profiling for lead discovery
    Manoj Kumar Prajapati, Abhilasha Mittal, Pritipadma Panda · 2025 · Computational Biology and Chemistry
  28. MOGAD: Integrated Multi-Omics and Graph Attention for the Discovery of Alzheimer’s Disease’s Biomarkers
    Zhizhong Zhang, Yuqi Chen, Changliang Wang, Maoni Guo, Lu Cai, Jian He, Yanchun Liang, Garry Wong, Liang Chen · 2025 · Informatics
  29. Multiomics and tumor banking: comprehensive plaforms- integrating cancer diversity, biomarker discovery and personalised cancer care in India
    Abhishek Mohanty, Apoorva Srinivasan, Pallavi Udupaa, Daniel Robin Catchpoole · 2025 · Human Molecular Genetics
  30. Advancements in Multi-omics Integration for Comprehensive Cancer Understanding and Treatment
    Aditi Praful Thapliyal, Pallavi Singh, Manu Pant, Kumud Pant · 2025 · Advances in Science, Technology & Innovation/Advances in science, technology & innovation
  31. Integrative Multi-Omics Analysis Reveals Key Metabolic Regulators and Prognostic Biomarkers in Pediatric and Adult Thyroid Cancer
    Bin Ling, Mengran Tian, Jinmiao Wang, Wei Feng Luo, Jialong Yu, Xing Wan, Qiman Dong, Ming Gao, Min Zhao, Xiangqian Zheng et al. · 2025 · Journal of Cancer
  32. Integrative multi-omics analysis of long non-coding RNA regulatory networks in chronic myeloid leukemia resistance and leukemic stem cell persistence
    Ismael Soltani, Wael Bahia, Hajer Bougatef, Chaker Slaymi, Y. Hasni, Wassim Youssef Almawi, Salima Ferchichi · 2025 · Computational Biology and Chemistry
  33. The regulatory role of the renin-angiotensin system in the tumor microenvironment and immunotherapy of hepatocellular carcinoma
    Zhengxian Qu, Xiaodong Wang · 2026 · Journal of the Renin-Angiotensin-Aldosterone System
  34. Robust graph structure learning to improve multi-omics cancer subtype classification
    Mengke Guo, Xiucai Ye, Tetsuya Sakurai · 2026 · BMC Bioinformatics
  35. A Tumor-Agnostic, Topology-Informed Scoring Framework for Drug Repurposing: Application to CDK4/6 Inhibitor Resistance in HR+ Breast Cancer
    Keyang Qian, Zijie Cai, Ruiquan Liu, Yang Wang, Jiayi Liu, Mengzi Wu, Mengdi Zhu, Linghan Wang, Huipei Gan, Zhuangqiu Yang et al. · 2026 · Biomedicines
  36. Early Cancer Detection: What's Going on and What's Next
    Emma Di Carlo · 2026 · MedComm
  37. SIGNIFICANCE OF OSTEOPONTIN FOR PREDICTING AGGRESSIVENESS OF PROSTATE CANCER
    N Yu Lukianova, Taras Zadvornyi, Tetiana Borikun, Oleksandr Mushii, Anna Pavlova, А. Tymoshenko, Eduard STAKHOVSKYI, Yu. V. Vitruk, Vasyl Fedorovich Chekhun · 2023 · Experimental Oncology
  38. Antisense-mediated splicing correction as a therapeutic approach for p53 K120R mutation
    Doyeong Kim, Sang‐Min Park, Seo-Young Lee, Jinchul Kim, Han-Byul Jung, Young Sook Kim, Sun‐Ku Chung · 2024 · BMB Reports
  39. TRPM8 levels determine tumor vulnerability to channel agonists
    Alessandro Alaimo, Francesco Giuseppe Carbone, Kristi Buzo, Nicole Annesi, Sacha Genovesi, Annalisa Lorenzato, Karen Widmann, Michela Libergoli, Elisa Marmocchi, Giovanni Bertalot et al. · 2025 · Molecular Oncology
  40. Uncovering subtype-specific metabolic signatures in breast cancer through multimodal integration, attention-based deep learning, and self-organizing maps
    Parisa Shahnazari, Kaveh Kavousi, Hamid Reza Khorram Khorshid, Zarrin Minuchehr, Bahram Goliaei, Reza M. Salek · 2025 · Scientific Reports
  41. Assessing Long-Term Stored Tissues for Multi-Omics Data Quality and Proteogenomics Suitability
    Kyu Jin Song, Minsuh Kim, Yong Jin Heo, Kyung-Cho Cho, Jae-Won Oh, Dae Ho Kim, Chanwoong Hwa, Yeji Do, Seunghyuk Choi, Hee Sang Hwang et al. · 2025 · Journal of Proteome Research
  42. A Review on the Applications and Implications of Artificial Intelligence and Machine Learning in Oncology
    Kunal Hiwase, Prateek Verma, N. R. Zade, Praveen Kumar, Induni Nayodhara Weerarathna, Swapnil K. Gundewar · 2026 · International Journal of Computational Intelligence Systems
  43. Integrative epigenome-transcriptome analysis unravels cancer-specific over-expressed genes potentially regulating immune microenvironment in clear cell renal cell carcinoma
    Nikhil Sureshkumar Gadewal, Abhiram Natu, Siddhartha Sen, Sukanya Rauniyar, Virupaksha Ajit Bastikar, Sanjay Gupta · 2024 · Biochimica et Biophysica Acta (BBA) - General Subjects
  44. Precision Oncology: Targeting Genomic Alterations and Cancer Signaling with Integrative Multi-Omics, Deep Learning and Network Biology in Medical Oncology
    Manish Kumar · 2026 · SSRN Electronic Journal
  45. Multi-channel Partial Graph Integration Learning of Partial Multi-omics Data for Cancer Subtyping
    Qingqing Cao, Jianping Zhao, Chun-Hou Zheng · 2023 · Current Bioinformatics
  46. AET-net: A framework for subtype classification based on the multi-omics data of breast cancer
    Qiaosheng Eric Zhang, Yalong Wei, Jie Hou, Junjie Xu, Zhenyu Sun, Heng Zhang, Zhaoman Zhong · 2024 · Molecular & cellular biomechanics
  47. Prediction of Lung Adenocarcinoma Driver Genes Through Protein–Protein Interaction Networks Utilizing GenePlexus
    Fei Yuan, Yuhang Zhang, FeiMing Huang, Xiaoyu Cao, Lei Chen, Jiabo Li, Wenfeng Shen, Kaiyan Feng, YuSheng Bao, Tao Huang et al. · 2024 · PROTEOMICS
  48. The Altered Molecular Landscape of Adjacent Normal Tissues in Oral Cancer
    Sapna Khowal · 2025 · IntechOpen eBooks
  49. Advancements in Mass Spectrometry Imaging for Cancer Research: From Tumor Profiling to Personalized Medicine
    Erica Alves, Bannimath Gurupadayya, Prabitha Prabhakaran · 2025 · Current Analytical Chemistry
  50. Identifying Molecular Determinants and Therapeutic Targets in Luminal B Breast Cancer: A Systems Biology Approach
    Yousef Saeidi, Masoud Ghorbani, Ali Najafi, Mehrdad Moosazadeh Moghaddam · 2025 · bioRxiv
  51. Recent Advances in Anti-Cancer Drugs
    Christiana Michael Neophytou · 2025 · International Journal of Molecular Sciences
  52. Chaos and complexity: Hallmarks of cancer progression
    Abicumaran Uthamacumaran · 2025 · Oxford University Press eBooks
  53. Artificial Intelligence and Bioinformatics in the Malignant Progression of Gastric Cancer
    Tasuku Matsuoka, Masakazu Yashiro · 2025 · Applied Sciences
  54. MASE-GC: a multi-omics autoencoder and stacking ensemble framework for gastric cancer classification
    Di Liu, Zhongguang Che, Guannan Xu, Ye Huang · 2025 · Frontiers in Cell and Developmental Biology
  55. Tumour markers and evidence-based pathology
    K.I. Maslova, Magdalena Chechlińska, Irmina Maria Michałek, Łukasz Taraszkiewicz, Paulina Kober, Inga Trulson, Karolina Worf, Sophie Gabriel, Laura Knoblauch, Fiona Campbell et al. · 2026 · Tumor Biology
  56. Integrative bioinformatics approaches for early detection biomarkers in ovarian cancer
    Emmanuel Ifeanyi Obeagu · 2026 · Annals of Medicine and Surgery
  57. SPP1⁺ macrophage-FADS1⁺ tumor cell crosstalk via the PDGFB-PDGFRB axis drives liver metastasis in colorectal cancer
    Pingfan Zhao, Fuyong Pei, Y. Liu, Yinan Jiang, Xiaochang Fang, Li Shu, Xin Hu, Feiyang Chen, MaoHui Feng, Xuanfei Li · 2026 · Translational Oncology
  58. Multi-Omics Graph Attention Network for Key Gene Prediction in Triple-Negative Breast Cancer
    Zixi Jiang, Kexin Cao, Fang Ge, Zhusheng Huang · 2026 · IEEE Transactions on Computational Biology and Bioinformatics
  59. Beyond chemotherapy: The rise of nucleic acid nanoformulations in personalized lung cancer therapy
    Sania Hermain, K S Harshitha, Nimbagal Raghavendra Naveen · 2026 · Cancer Pathogenesis and Therapy
  60. Integrating multi-omics data for next-generation cancer research and precision medicine
    Soham Biswas, Sovon Acharya, Anjali Prajapat, Poonam Sen, Shailesh Desai, Shatrunjai Giri, Rune Matthiesen, The CAPCI, Gyaneshwer Chaubey, Prashanth Suravajhala · 2026 · Clinical & Translational Oncology
  61. Data harmonization processes of cancer data into the observational medical outcomes partnership common data model
    Ifani Pinto Nada, Stefano Bonacina · 2026 · Scientific Reports
  62. Cross-scale bioanalytical integration for decoding tumour regulatory plasticity in oncology
    Shiv Kumar, Ankita Mondal, Vikash Kumar Dubey · 2026 · Critical Reviews in Oncology/Hematology
  63. A Markov Blanket-based framework for dependency-aware feature selection in multimodal breast cancer data
    Elena Krikun, Abedalrhman Alkhateeb · 2026 · Network Modeling Analysis in Health Informatics and Bioinformatics
  64. Africa’s emerging role in precision oncology: translational insights from the harnessing functional genomics in cancer research conference, Windhoek, 23-26 September 2025
    Charlize L. Rix, Eliud Buberwa, Justice Ohene Amofa, Uvatera Maurihungirire, Rurde Hosea, Linda Ratjama, Graça K. Kandanda, Loide N Nangolo, Colin Stanley, Georgia Schäfer et al. · 2026 · BMC Proceedings
  65. Transcriptomic and epigenomic insights into ovarian cancer: a bioinformatics perspective – a narrative review
    Emmanuel Ifeanyi Obeagu · 2026 · Annals of Medicine and Surgery
  66. Beethoven, Infected with Hepatitis B, Inspired the “Beethoven Virus.”
    Sun-Kyung Lee, Seung Hyun Kim, Joohong Ahnn · 2023 · Molecules and Cells
  67. Harnessing the Power of Multimodal Data: Medical Fusion and Classification
    Et al. Bhushan Rajendra Nandwalkar · 2024 · Advances in Nonlinear Variational Inequalities
  68. Explore & actuate: the future of personalized medicine in oncology through emerging technologies
    Erald Babu, Subhojit Sen · 2024 · Current Opinion in Oncology
  69. Metabolome and transcriptome integration reveals cerebral cortical metabolic profiles in rats with subarachnoid hemorrhage
    Haoran Lu, Teng Xie, Shanshan Wei, Yanhua Wang, Huibing Li, Baochang Luo, Xiaohong Qin, Xizhi Liu, Zilong Zhao, Zhibiao Chen et al. · 2024 · Frontiers in Aging Neuroscience
  70. A knowledge base for generating patient-specific pathways for individualized treatment decisions in clinical applications
    Florian Auer · 2022
  71. MMKNF: Integrating multi-omics data to identify cancer subtypes based on multi-kernel network fusion
    Yuanyuan Zhang, Qian Liu, Wenhao Wu, Haoyu Zheng, Shudong Wang · 2023 · Research Square
  72. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to
    Manish Kumar · 2023
  73. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutics
    Manish Kumar · 2023
  74. The Precision Oncology Approach to Molecular Cancer Therapeutics Targeting Oncogenic Signaling Pathways is a Means to an End
    Manish Kumar · 2023
  75. The Precision Oncology Approach to Molecular Cancer Therapeutics Targeting Oncogenic Signaling Pathways is a Means to an End
    Manish Kumar · 2024 · Thesis Commons (OSF Preprints)
  76. Precision Oncology, Signaling Pathways Reprogramming and Targeted Therapy: A Holistic Approach to Molecular Cancer Therapeutics
    Manish Kumar · 2024 · Thesis Commons (OSF Preprints)
  77. Precision Oncology, Signaling Pathways Reprogramming and Targeted Therapy: A Holistic Approach to Molecular Cancer Therapeutics
    Manish Kumar · 2024
  78. Precision Oncology, Signaling Pathways Reprogramming and Targeted Therapy: A Holistic Approach to Molecular Cancer Therapeutics
    Manish Kumar · 2024
  79. Precision Oncology, Signaling Pathways Reprogramming and Targeted Therapy: A Holistic Approach to Molecular Cancer Therapeutics
    Manish Kumar · 2024
  80. Decoding Breast Cancer Heterogeneity via Multi-Omics Integration and Language Model-Based Interpretation
    Robail Yasrab, Ruchit Agrawal, Maha Mohamed Saber-Ayad, Mohamed S. El-Hadidi · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  81. A generative AI multi-agent framework with integrated XAI governance for cancer diagnostics: from multi-omics interpretation to lifestyle risk stratification
    Barki, Chamseddine, Chouchen, Mariem, Sediri, Afef, Ceylan, Halil İbrahim, Rahmouni, Hanene Boussi, Muntean, Raul Ioan, El-Seedi, Hesham R., Bragazzi, Nicola Luigi, Dergaa, Ismail · 2026 · Frontiers in Systems Biology
  82. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutics
    Manish Kumar · 2022 · OSF Preprints (OSF Preprints)
  83. Fast Growing Furious Races for Targeting Fibroblast Growth Factor Receptors
    Daechan Park · 2022 · Molecules and Cells
  84. Omics Approaches in Cancer Management
    Abhishek Mohanty, Daniel Robin Catchpoole · 2022 · Journal of Precision Oncology
  85. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutics
    Manish Kumar · 2023 · OSF Preprints (OSF Preprints)
  86. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutics
    Manish Kumar · 2023 · OSF Preprints (OSF Preprints)
  87. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutics
    Manish Kumar · 2023 · Thesis Commons (OSF Preprints)
  88. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutics
    Manish Kumar · 2023
  89. Lipidomics in Multi‐Omics Studies
    Bjoern Titz, Oksana Lavrynenko, Nikolai V. Ivanov · 2023
  90. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutics
    Manish Kumar · 2023
  91. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutics
    Manish Kumar · 2023
  92. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutics
    Manish Kumar · 2023
  93. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutics
    Manish Kumar · 2023
  94. Cancer genomics, targeted therapy to precision oncology: the treatment paradigm is a holistic approach to cancer therapeutics
    Manish Kumar · 2023 · HAL
  95. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutics
    Manish Kumar · 2023
  96. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutics
    Manish Kumar · 2023
  97. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutic
    Manish Kumar · 2023
  98. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutics
    Manish Kumar · 2023 · Qeios
  99. Targeting Cancer Cell Signaling Using Precision Oncology Towards a Holistic Approach to Cancer Therapeutics
    Manish Kumar · 2023
  100. A review on biomarkers in cancer immunotherapy: present and future
    Pritisnigdha Pattnaik · 2023