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The GlycanBuilder and GlycoWorkbench glycoinformatics tools: updates and new developments
Abstract
During the EUROCarbDB project our group developed the GlycanBuilder and GlycoWorkbench glycoinformatics tools. This short communication summarizes the capabilities of these two tools and updates which have been made since the original publications in 2007 and 2008. GlycanBuilder is a tool that allows for the fast and intuitive drawing of glycan structures; this tool can be used standalone, embedded in web pages and can also be integrated into other programs. GlycoWorkbench has been designed to semi-automatically annotate glycomics data. This tool can be used to annotate mass spectrometry (MS) and MS/MS spectra of free oligosaccharides, N and O-linked glycans, GAGs (g lycos a mino g lycans) and glycolipids, as well as MS spectra of glycoproteins.
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Cited by
Caspi, R., Altman, T., Billington, R., Dreher, K., Foerster, H., Fulcher, C. A., Holland, T. A., Keseler, I. M., Kothari, A., Kubo, A., et al. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1103 · Cited by 1,204
The Challenge and Promise of Glycomics
Cummings, R. D., & Pierce, J. M. (2014) · Chemistry & Biology · doi:10.1016/j.chembiol.2013.12.010 · Cited by 400
Reiding, K. R., Blank, D., Kuijper, D. M., Deelder, A. M., & Wuhrer, M. (2014) · Analytical Chemistry · doi:10.1021/ac500335t · Cited by 334
Jedrzejewski, P., Del Val, I., Constantinou, A., Dell, A., Haslam, S., Polizzi, K., & Kontoravdi, C. (2014) · International Journal of Molecular Sciences · doi:10.3390/ijms15034492 · Cited by 83
Self-citationUsing Databases and Web Resources for Glycomics Research
Aoki-Kinoshita, K. F. (2013) · Molecular & Cellular Proteomics · doi:10.1074/mcp.r112.026252 · Cited by 42
Metadata
- Authors
- Damerell, D., Ceroni, A., Maass, K., Ranzinger, R., Dell, A., & Haslam, S. M.
- Venue
- bchm
- Publisher
- Walter de Gruyter GmbH
- Published
- 2012-10-11
- Volume
- 393
- Issue
- 11
- Pages
- 1357-1362
- ISSN
- 1431-6730 (ISSN-L)
- 1437-4315
- OpenAlex
- W2015986985
- Cited by
- 166
- References
- 0
- FWCI
- 5.34
- Type
- journal article
- Language
- en
- Open access
- closed
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- Damerell, D., Ceroni, A., Maass, K., Ranzinger, R., Dell, A., & Haslam, S. M. (2012). The GlycanBuilder and GlycoWorkbench glycoinformatics tools: updates and new developments. bchm. https://doi.org/10.1515/hsz-2012-0135
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