Single-Molecule Measurements of the Persistence Length of Double-Stranded RNA

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Platinum-Based Drugs and DNA Interactions Studied by Single-Molecule and Bulk Measurements

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The mechanics of short rod-like molecules in tension

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Effects of cytosine methylation on DNA morphology: An atomic force microscopy study

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Mechanical properties of single supramolecular polymers from correlative AFM and fluorescence microscopy

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The origin of different bending stiffness between double-stranded RNA and DNA revealed by magnetic tweezers and simulations

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The Dynamics of Unfolded versus Folded tRNA: The Role of Electrostatic Interactions

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Effect of Confinement in Nanopores on RNA Interactions with Functionalized Mesoporous Silica Nanoparticles

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An RNA toolbox for single-molecule force spectroscopy studies

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Instrumentation and metrology for single RNA counting in biological complexes or nanoparticles by a single-molecule dual-view system

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Hydrogen Bonding versus Ion Pairing in Polyelectrolyte Multilayers with Homopolynucleotides

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Integrated magnetic tweezers and single-molecule FRET for investigating the mechanical properties of nucleic acid

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The effect of RNA stiffness on the self-assembly of virus particles

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Double-stranded RNA bending by AU-tract sequences

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cgNA+web : A Visual Interface to the cgNA+ Sequence-dependent Statistical Mechanics Model of Double-stranded Nucleic Acids

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Statistical mechanics of polymers subject to a force

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Force Spectroscopy with Optical and Magnetic Tweezers

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Unbinding forces and energies between a siRNA molecule and a dendrimer measured by force spectroscopy

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Mechanical Properties of High-G⋅C Content DNA with A-Type Base-Stacking

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Contour and persistence length of Corynebacterium diphtheriae pili by atomic force microscopy

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Trying on tRNA for Size: RNase P and the T-box Riboswitch as Molecular Rulers

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Conformations of an RNA Helix-Junction-Helix Construct Revealed by SAXS Refinement of MD Simulations

Chen, Y.-L., Lee, T., Elber, R., & Pollack, L. (2018) · Biophysical Journal · doi:10.1016/j.bpj.2018.11.020 · Cited by 22

Sequence-dependent mechanical properties of double-stranded RNA

Marín-González, A., Vilhena, J. G., Moreno‐Herrero, F., & Pérez, R. (2019) · Nanoscale · doi:10.1039/c9nr07516j · Cited by 22

Mechanical Properties of Base-Modified DNA Are Not Strictly Determined by Base Stacking or Electrostatic Interactions

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Mechanical properties of nucleic acids and the non-local twistable wormlike chain model

Segers, M., Voorspoels, A., Sakaue, T., & Carlon, E. (2022) · The Journal of Chemical Physics · doi:10.1063/5.0089166 · Cited by 21

Molecular Precision at Micrometer Length Scales: Hierarchical Assembly of DNA–Protein Nanostructures

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Quantitative high-resolution sensing of DNA hybridization using magnetic tweezers with evanescent illumination

Oliver, P. M., Park, J. S., & Vezenov, D. V. (2010) · Nanoscale · doi:10.1039/c0nr00479k · Cited by 21

Tuning RNA Flexibility with Helix Length and Junction Sequence

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Shaping membrane vesicles by adsorption of a semiflexible polymer

Li, B., & Abel, S. M. (2017) · Soft Matter · doi:10.1039/c7sm01751k · Cited by 20

DNA based molecular motors

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Auto-orientation of G-wire DNA on mica

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Analysis and purification of ssRNA and dsRNA molecules using asymmetrical flow field flow fractionation

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Thermodynamics and kinetics of DNA and RNA dinucleotide hybridization to gaps and overhangs

Ashwood, B., Jones, M. S., Radakovic, A., Khanna, S., Lee, Y., Sachleben, J. R., Szostak, J. W., Ferguson, A. L., & Tokmakoff, A. (2023) · Biophysical Journal · doi:10.1016/j.bpj.2023.07.009 · Cited by 21

Coarse-grained modelling of supercoiled RNA

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Molecular Determinants for Cyclo-Oligosaccharide-Based Nanoparticle-Mediated Effective siRNA Transfection

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What are the limits of the packaging capacity for genomic RNA in the cores of rotaviruses and of other members of the Reoviridae?

Desselberger, U. (2019) · Virus Research · doi:10.1016/j.virusres.2019.197822 · Cited by 19

Sequence-controlled RNA self-processing: computational design, biochemical analysis, and visualization by AFM

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Stiffened yeast telomerase RNA supports RNP function in vitro and in vivo

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The Incorporation of Ribonucleotides Induces Structural and Conformational Changes in DNA

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A Universal Assay for Making DNA, RNA, and RNA–DNA Hybrid Configurations for Single-Molecule Manipulation in Two or Three Steps without Ligation

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Rate-dependent behavior of connective tissue through a micromechanics-based hyper viscoelastic model

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Magnetic Tweezers: Development and Use in Single-Molecule Research

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A Polymer Physics Framework for the Entropy of Arbitrary Pseudoknots

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Cooperative effects on the compaction of DNA fragments by the nucleoid protein H-NS and the crowding agent PEG probed by Magnetic Tweezers

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Nanoscale structures and mechanics of peptide nucleic acids

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Swelling of biological and semiflexible polyelectrolytes

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Temperature-dependent elasticity of DNA, RNA, and hybrid double helices

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The Physics of micro- and nano-manipulation: Fundamentals and applications

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Ultra-high pressure slalom chromatography: Application to the characterization of large DNA and RNA samples relevant in cell and gene therapy

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Designing synthetic RNA for delivery by nanoparticles

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Step Length Measurement—Theory and Simulation for Tethered Bead Constant-Force Single Molecule Assay

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MAGNETIC FORCE MICROMANIPULATION SYSTEMS FOR THE BIOLOGICAL SCIENCES

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Direct visualization of the side-by-side self-assembly of high and low acyl gellan gum by AFM

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Effects of Water on the Single-Chain Elasticity of Poly(U) RNA

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A microfluidic electrophoretic dual dynamic staining method for the identification and relative quantitation of dsRNA contaminants in mRNA vaccines

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Efficient methods for determining folding free energies in single-molecule pulling experiments

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GC-Content Dependence of Elastic and Overstretching Properties of DNA:RNA Hybrid Duplexes

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Measuring Single-Molecule Twist and Torque in Multiplexed Magnetic Tweezers

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Temperature-Dependent Twist of Double-Stranded RNA Probed by Magnetic Tweezer Experiments and Molecular Dynamics Simulations

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Filament rigidity causes F-actin depletion from nonbinding surfaces

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The DbpA catalytic core unwinds double-helix substrates by directly loading on them

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Coarse-Grained Double-Stranded RNA Model from Quantum-Mechanical Calculations

Cruz-León, S., Vázquez‐Mayagoitia, Á., Melchionna, S., Schwierz, N., & Fyta, M. (2018) · The Journal of Physical Chemistry B · doi:10.1021/acs.jpcb.8b03566 · Cited by 11

Nucleic acid polymeric properties and electrostatics: Directly comparing theory and simulation with experiment

Sim, A. Y. L. (2015) · Advances in Colloid and Interface Science · doi:10.1016/j.cis.2015.09.008 · Cited by 11

Self consistent field theory of virus assembly

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The effects of DMSO on DNA conformations and mechanics

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Retention mechanism in slalom chromatography: Perspectives on the characterization of large DNA and RNA biopolymers in cell and gene therapy

Gritti, F. G. (2025) · Journal of Chromatography A · doi:10.1016/j.chroma.2025.465691 · Cited by 10

Probing the microscopic structure and flexibility of oxidized DNA by molecular simulations

Chhetri, K. B., Naskar, S., & Maiti, P. K. (2022) · Indian Journal of Physics · doi:10.1007/s12648-022-02299-y · Cited by 10

Reducible Dimeric Conjugates of Small Internally Segment Interfering RNA for Efficient Gene Silencing

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Native RNA Purification Method for Small RNA Molecules Based on Asymmetrical Flow Field-Flow Fractionation

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Characterization of Protein–Protein Interactions Using Atomic Force Microscopy

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Diameter Dependent Melting and Softening of dsDNA Under Cylindrical Confinement

Chhetri, K. B., Dasgupta, C., & Maiti, P. K. (2022) · Frontiers in Chemistry · doi:10.3389/fchem.2022.879746 · Cited by 9

Locked Nucleic Acid Oligonucleotides Facilitate RNA•LNA-RNA Triple-Helix Formation and Reduce MALAT1 Levels

Krishna, M. S., Mahendran, G., & Brown, J. A. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25031630 · Cited by 9

Addressing potent single molecule AFM study in prediction of swelling and dissolution rate in polymer matrix tablets

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The deposition characteristics of PAN/PPY on SiO2 substrate by density functional theory (DFT) calculations

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Nucleic Acid Foldamers: Design, Engineering and Selection of Programmable Biomaterials with Recognition, Catalytic and Self‐assembly Properties

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Chemical Composition and Backbone Modifications Define Deformability of Nucleic Acid Nanoparticles

Pandey, L., Panigaj, M., Radwan, Y., Chhabra, H., Chen, Y., Aksimentiev, A., Afonin, K. A., & Wanunu, M. (2025) · ACS Nano · doi:10.1021/acsnano.5c04293 · Cited by 8

Elasticity of a DNA chain dotted with bubbles under force

Majumdar, D. (2021) · Physical review. E · doi:10.1103/physreve.103.052412 · Cited by 8

Modeling of supramolecular biopolymers: Leading the in silico revolution of tissue engineering and nanomedicine

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Optical tweezer and TIRF microscopy for single molecule manipulation of RNA/DNA nanostructures including their rubbery property and single molecule counting

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Dynamic Stabilization of Unit Polyion Complexes Incorporating Small Interfering RNA by Fine-Tuning of Cationic Block Length in Two-Branched Poly(ethylene glycol)-b-poly( l -lysine)

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Torsion of DNA modeled as a heterogeneous fluctuating rod

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A new entropy model for RNA: part II. Persistence-related entropic contributions to RNA secondary structure free energy calculations

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Softening of DNA near melting as disappearance of an emergent property

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Polymeric and Polymer-Functionalized Drug Delivery Vectors: From Molecular Architecture and Elasticity to Cellular Uptake

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Sequence-Dependent Shape and Stiffness of DNA and RNA Double Helices: Hexanucleotide Scale and Beyond

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