Gene Expression Intensity Shapes Evolutionary Rates of the Proteins Encoded by the Vertebrate Genome

Cited by (251)

Items 201–251 of 251

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   Mayumi Oda, Shunichi Wakabayashi, Neil Ari Wijetunga, Shinsuke Yuasa, Hirokazu Enomoto, Ruri Kaneda, Sung Han Yoon, Nishant Mittal, Qiang Jing, Masako Suzuki et al. · 2018 · BMC Genomics
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11. Insights into Eukaryotic Interacting Protein Evolution
    Sandip Chakraborty, Soumita Podder, Bratati Kahali, Tina Begum, Kamalika Sen, Tapash Chandra Ghosh · 2011 · Springer eBooks
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13. Systematic Comparisons of Positively Selected Genes between Gossypium arboreum and Gossypium raimondii Genomes
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15. Site level factors that affect the rate of adaptive evolution in humans and chimpanzees; the effect of contracting population size
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16. The distribution of fitness effects of new mutations in regulatory regions of the D. melanogaster genome
    Austin Daigle, Jacob Marsh, Andrew Kay, Parul Johri · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
17. Cell Compartment is a Predictor of Protein Rate of Evolution, but not in the Manner Expected: Evidence Against the Extended Complexity Hypothesis
    Juan Rivas-Santisteban, Pablo Yubero, Laurence D. Hurst · 2025 · Genome Biology and Evolution
18. Model parameters of molecular evolution explain genomic correlations
    Xun Gu, Wenda Tang · 2015 · Briefings in Bioinformatics
19. Stress-Induced Constraint on Expression Noise of Essential Genes in E. coli
    Perry A. LaBoone, Raquel Assis · 2024 · Journal of Molecular Evolution
20. Fixation of Expression Divergences by Natural Selection in Arabidopsis Coding Genes
    Cheng Qi, Qiang Wei, Youn Jin Ye, Jing Liu, Guishuang Li, Jane W. Liang, Haiyan Huang, Guang Wu · 2024 · International Journal of Molecular Sciences
21. Epistasis Creates Invariant Sites and Modulates the Rate of Molecular Evolution
    Ravi Patel, Vincenzo Carnevale, Sudhir Kumar · 2022 · Molecular Biology and Evolution
22. A single determinant for the rate of yeast protein evolution
    David Allan Drummond, Alpan Raval, Claus O. Wilke · 2005 · arXiv (Cornell University)
23. Comparative analyses of adaptive phenomena in eukaryotic systems
    Stephen J. Bush · 2014 · The University of Bath Online Publications Store (The University of Bath)
24. Selection against Amino Acid Replacements in Human Proteins
    Sankar Subramanian · 2008 · Encyclopedia of Life Sciences
25. Genòmica evolutiva de la via de transducció de senyal de la insulina/TOR a insectes i vertebrats.
    David Álvarez Ponce · 2010 · LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Científicas)
26. Aproximación a la evolución y función de la familia génica Asr
    Nicolás Frankel · 2006 · Repositorio Digital Institucional de la Universidad de Buenos Aires (Universidad de Buenos Aires)
27. Mammalian specific mouse genes are evolving faster than mouse genes conserved across other eukaryotic lineages
    Iti Chaturvedi · 2007 · Frontiers in bioscience
28. MISFOLDING DOMINATES PROTEIN EVOLUTION
    David Allan Drummond · 2006
29. Controversies on governing the rates of protein evolution
    Sun-Shim Choi · 2009 · Interdisciplinary Bio Central
30. Inferring strength of selection in vertebrate genomes
    Lél Eöry · 2011 · ERA
31. Evolutionary characterization of genes involved in development and adaptation in vertebrates under differential environmental conditions of selective pressure
    João Paulo Machado · 2014 · Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)
32. Genomic evidence of speciation and adaptation in diatoms
    Julie A. Koester · 2012 · ResearchWorks at the University of Washington (University of Washington)
33. Towards Relating the Evolution of the Gene Repertoire in Mammals to Tissue Specialisation
    Shiri Freilich · 2006
34. Factors that affect the rates of adaptive and non-adaptive evolution at the gene level in humans and chimpanzees
    Vivak Soni, Adam Eyre‐Walker · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
35. A genetic perspective on social insect castes: A synthetic review and empirical study
    Anna M. Chernyshova · 2021 · Scholarship@Western (Western University)
36. Faculty Opinions recommendation of A novel method to detect proteins evolving at correlated rates: identifying new functional relationships between coevolving proteins.
    Rand David · 2010 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
37. Causes of Substitution Frequency Variation in Pathogenic Bacteria
    Wagied Davids · 2005 · KTH Publication Database DiVA (KTH Royal Institute of Technology)
38. Selection against Amino Acid Replacements in Human Proteins
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39. References
    2014 · Elsevier eBooks
40. Third Santorini Biologie Prospective Conference 2006: From Human Genetic Variations to Prediction of Risks and Responses to Drugs and the Environment, Santorini Island, Greece, September 29 - October 2, 2006
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41. Variation of natural selection in the Amoebozoa reveals heterogeneity across the phylogeny and adaptive evolution in diverse lineages
    Fang Wang, Yonas I. Tekle · 2022 · Frontiers in Ecology and Evolution
42. The effects of de novo mutation on gene expression and the consequences for fitness in Chlamydomonas reinhardtii
    Eniolaye J. Balogun, Rob W. Ness · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
43. Unusual Dependence between Gene Expression and Negative Selection in Euplotes
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44. Unusual Dependence between Gene Expression and Negative Selection in Euplotes
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45. Purifying Selection Influences the Comparison of Heterozygosities between Populations
    Sankar Subramanian · 2024 · Biology
46. The transcriptome of the olm provides insights into its evolution and gene expression
    Susanne Holtze, Defne Demirtürk, Oliver Ohlenschläger, Simon Hegele, Kanstantsin Siniuk, Silke Förste, Venket Raghavan, Marco Groth, Martin Bens, Nils Hassel et al. · 2025 · Scientific Reports
47. Pleiotropy and the evolutionary stability of plastic phenotypes: a geometric framework
    Charles Wang, James G. DuBose · 2025 · G3 Genes Genomes Genetics
48. The Pleiotropy Hypothesis of Molecular Evolution
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49. Comparative Genomics in Birds
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50. Decoding Dual Regulatory Layers: Integrating Differential Expression and Alternative Splicing Dynamics in the Evolution of Laryngeal Echolocation Across Chiropteran Lineages
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51. Phylostratigraphic analyses of mouse tissue transcriptomes and comparative genomics of orphan genes
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