Epigenetic silencing of the proapoptotic gene BIM in anaplastic large cell lymphoma through an MeCP2/SIN3a deacetylating complex
Open accessAbstract
BIM is a proapoptotic member of the Bcl-2 family. Here, we investigated the epigenetic status of the BIM locus in NPM/ALK+ anaplastic large cell lymphoma (ALCL) cell lines and in lymph node biopsies from NPM/ALK+ ALCL patients. We show that BIM is epigenetically silenced in cell lines and lymph node specimens and that treatment with the deacetylase inhibitor trichostatin A restores the histone acetylation, strongly upregulates BIM expression, and induces cell death. BIM silencing occurs through recruitment of MeCP2 and the SIN3a/histone deacetylase 1/2 (HDAC1/2) corepressor complex. This event requires BIM CpG methylation/demethylation with 5-azacytidine that leads to detachment of the MeCP2 corepressor complex and reacetylation of the histone tails. Treatment with the ALK inhibitor PF2341066 or with an inducible shRNA targeting NPM/ALK does not restore BIM locus reacetylation; however, enforced expression of NPM/ALK in an NPM/ALK-negative cell line significantly increases the methylation at the BIM locus. This study demonstrates that BIM is epigenetically silenced in NPM/ALK-positive cells through recruitment of the SIN3a/HDAC1/2 corepressor complex and that NPM/ALK is dispensable to maintain BIM epigenetic silencing but is able to act as an inducer of BIM methylation.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
HDAC1/2 multiprotein complexes can also repress the expression of pro-apoptotic genes.
“Focusing on a single target gene could lead to misinterpretation, as HDAC1/2 multiprotein complexes can also repress the expression of pro-apoptotic genes (Contreras et al., 2013;Piazza et al., 2013;Ramsey, He, Forster, Ory, & Ellisen, 2011).”
From HDACs and the epigenetic plasticity of cancer cells: target the complexity (2022) · cites this paper as Piazza et al., 2013
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
The citation lists haven’t been fetched yet
References 53 · Cited by 51
- Authors
- Piazza, R., Magistroni, V., Mogavero, A., Andreoni, F., Ambrogio, C., Chiarle, R., Mologni, L., Bachmann, P. S., Lock, R. B., Collini, P., Pelosi, G., & Gambacorti-Passerini, C.
- Affiliations
- University of Milan (IT)
- University of Turin (IT)
- UNSW Sydney (AU)
- Corresponding author
- Piazza, Rocco
- ORCID
- Venue
- Neoplasia
- Publisher
- Elsevier BV
- Published
- 2013-05
- Volume
- 15
- Issue
- 5
- Pages
- 511-IN17
- ISSN
- 1476-5586 (ISSN-L)
- PMC
- PMC3638354
- OpenAlex
- W1801993810
- Cited by
- 51
- References
- 53
- Citations by year
- 2026: 1 · 2025: 2 · 2024: 2 · 2023: 3 · 2022: 4 · 2021: 1 · 2020: 4 · 2019: 3 · 2018: 3 · 2017: 11 · 2016: 4 · 2015: 11 · 2014: 1 · 2013: 1
- FWCI
- 2.54
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Neoplasia (publishedVersion, cc-by-nc-nd)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- UNSWorks (UNSW Sydney) (submittedVersion, cc-by-nc-nd)
- BOA (University of Milano-Bicocca) (submittedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- UNSWorks (University of New South Wales, Sydney, Australia) (submittedVersion, cc-by-nc-nd)
- Funders
- Fondazione Cariplo (2009-2667)
- Associazione Italiana per la Ricerca sul Cancro (IG-10092)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Health Sciences › Medicine › Pathology and Forensic Medicine › Lymphoma Diagnosis and Treatment
- Keywords
- building information modeling, anaplastic large cell lymphoma, NPM-ALK, epigenetic silencing, MeCP2, SIN3A, histone acetylation, DNA methylation, CpG methylation, trichostatin A, azacitidine, apoptosis, Bcl-2 family proteins, ALK inhibitors, histone deacetylase inhibitors
- MeSH terms
- Bcl-2-Like Protein 11, Acetylation, Cell Survival, Chromatin, Histones, Humans, Hydroxamic Acids, Membrane Proteins, Protein Processing, Post-Translational, Protein-Tyrosine Kinases, Proto-Oncogene Proteins, Repressor Proteins, Gene Expression Regulation, Neoplastic, Case-Control Studies, Lymphoma, Large-Cell, Anaplastic, CpG Islands, DNA Methylation, 5' Untranslated Regions, Gene Silencing, Epigenesis, Genetic, Cell Line, Tumor, Apoptosis Regulatory Proteins, Methyl-CpG-Binding Protein 2, Sin3 Histone Deacetylase and Corepressor Complex, Histone Deacetylase Inhibitors
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review