PreprintCited by 10Microbial Metabolic Engineering and BioproductionBiochemical and biochemical processesPlant biochemistry and biosynthesis

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Microbial production of the plant flavanone hesperetin from caffeic acid

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Hanko, Erik K. R., Correia, João, Souza, Caio S., Green, Alison, Chromy, Jakub, Stoney, Ruth, Yan, Cunyu, Takano, Eriko, Lousa, Diana, Soares, Cláudio M., Breitling, Rainer·2023·BMC Research Notes

Preprint — published as 10.1186/s13104-023-06620-8 · Paper page

Abstract

Objective Hesperetin is an important O-methylated flavonoid produced by citrus fruits and of potential pharmaceutical relevance. The microbial biosynthesis of hesperetin could be a viable alternative to plant extraction, as plant extracts often yield complex mixtures of different flavonoids making it challenging to isolate pure compounds. In this study, hesperetin was produced from caffeic acid in the microbial host Escherichia coli. We combined a previously optimised pathway for the biosynthesis of the intermediate flavanone eriodictyol with a combinatorial library of plasmids expressing three candidate flavonoid O-methyltransferases. Moreover, we endeavoured to improve the position specificity of CCoAOMT7, a flavonoid O-methyltransferase from Arabidopsis thaliana that has been demonstrated to O-methylate eriodictyol in both the para- and meta-position, thus leading to a mixture of hesperetin and homoeriodictyol. Results The best performing flavonoid O-methyltransferase in our screen was found to be CCoAOMT7, which could produce up to 48.4 µM hesperetin and 12.7 µM homoeriodictyol from 3 mM caffeic acid in E. coli 5-alpha. Using a platform for enzyme engineering that scans the mutational space of selected key positions, predicting their structures using homology modelling and inferring their potential catalytic improvement using docking simulations, we were able to identify a CCoAOMT7 mutant with a two-fold higher position specificity for hesperetin. The mutant’s catalytic activity, however, was considerably diminished. Our findings suggest that hesperetin can be created from central carbon metabolism in E. coli following the introduction of a caffeic acid biosynthesis pathway.

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Research works printed but not linked: 23

  1. Górniak I, Bartoszewski R, Króliczewski J. Comprehensive review of antimicrobial activities of plant flavonoids. Phytochem Rev. 2019;18(1):241–72. · DOI
  2. Kopustinskiene DM, Jakstas V, Savickas A, Bernatoniene J. Flavonoids as anticancer agents. Nutrients. 2020;12(2):457. · DOI
  3. Pei R, Liu X, Bolling B. Flavonoids and gut health. Curr Opin Biotechnol. 2020;61:153–9. · DOI
  4. Barreca D, Gattuso G, Bellocco E, Calderaro A, Trombetta D, Smeriglio A, et al. Flavanones: Citrus phytochemical with health-promoting properties. BioFactors. 2017;43(4):495–506. · DOI
  5. Anticona M, Blesa J, Frigola A, Esteve MJ. High biological value compounds extraction from citrus waste with non-conventional methods. Foods. 2020;9(6):811. · DOI
  6. Ruviaro AR, Barbosa PdPM, Macedo GA. Enzyme-assisted biotransformation increases hesperetin content in citrus juice by-products. Food Res Int. 2019;124:213–21. · DOI
  7. Liu J, Tian M, Wang Z, Xiao F, Huang X, Shan Y. Production of hesperetin from naringenin in an engineered Escherichia coli consortium. J Biotechnol. 2022;347:67–76. · DOI
  8. Cui H, Song MC, Lee JY, Yoon YJ. Microbial production of O-methylated flavanones from methylated phenylpropanoic acids in engineered Escherichia coli. J Ind Microbiol Biotechnol. 2019;46(12):1707–13. · DOI
  9. Peng B, Zhang L, He S, Oerlemans R, Quax WJ, Groves MR et al. Engineering a plant polyketide synthase for the biosynthesis of methylated flavonoids.bioRxiv. 2022:2022.10. 02.510496.
  10. Sambrook J, Russell DW. Molecular Cloning: A Laboratory Manual. 3rd ed. New York: Cold Spring Harbor Laboratory Press; 2001.
  11. Carbonell P, Wong J, Swainston N, Takano E, Turner NJ, Scrutton NS, et al. Selenzyme: enzyme selection tool for pathway design. Bioinformatics. 2018;34(12):2153–4. · DOI
  12. Kim S, Chen J, Cheng T, Gindulyte A, He J, He S, et al. PubChem 2023 update. Nucleic Acids Res. 2023;51(D1):D1373–D80. · DOI · Paper page
  13. Swainston N, Dunstan M, Jervis AJ, Robinson CJ, Carbonell P, Williams AR, et al. PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts. Bioinformatics. 2018;34(13):2327–9. · DOI
  14. Lee TS, Krupa RA, Zhang F, Hajimorad M, Holtz WJ, Prasad N, et al. BglBrick vectors and datasheets: a synthetic biology platform for gene expression. J Biol Eng. 2011;5:1–14.
  15. Robinson CJ, Carbonell P, Jervis AJ, Yan C, Hollywood KA, Dunstan MS, et al. Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers. Metab Eng. 2020;60:168–82. · DOI
  16. Šali A, Blundell TL. Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol. 1993;234(3):779–815. · DOI · Paper page
  17. Ferrer J-L, Zubieta C, Dixon RA, Noel JP. Crystal structures of alfalfa caffeoyl coenzyme A 3-O-methyltransferase. Plant Physiol. 2005;137(3):1009–17. · DOI
  18. Varadi M, Anyango S, Deshpande M, Nair S, Natassia C, Yordanova G, et al. AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models. Nucleic Acids Res. 2022;50(D1):D439–D44. · DOI · Paper page
  19. Trott O, Olson AJ. AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J Comput Chem. 2010;31(2):455–61. · DOI · Paper page
  20. Dunstan MS, Robinson CJ, Jervis AJ, Yan C, Carbonell P, Hollywood KA, et al. Engineering Escherichia coli towards de novo production of gatekeeper (2 S)-flavanones: naringenin, pinocembrin, eriodictyol and homoeriodictyol. Synth Biol. 2020;5(1):ysaa012. · DOI
  21. Wils CR, Brandt W, Manke K, Vogt T. A single amino acid determines position specificity of an Arabidopsis thaliana CCoAOMT-like O-methyltransferase. FEBS Lett. 2013;587(6):683–9. · DOI
  22. Kim DH, Kim B-G, Lee Y, Ryu JY, Lim Y, Hur H-G, et al. Regiospecific methylation of naringenin to ponciretin by soybean O-methyltransferase expressed in Escherichia coli. J Biotechnol. 2005;119(2):155–62. · DOI
  23. Kang S-Y, Choi O, Lee JK, Hwang BY, Uhm T-B, Hong Y-S. Artificial biosynthesis of phenylpropanoic acids in a tyrosine overproducing Escherichia coli strain. Microb Cell Fact. 2012;11(1):1–9.

Metadata

Authors
Hanko, E. K. R., Correia, J., Souza, C. S., Green, A., Chromy, J., Stoney, R., Yan, C., Takano, E., Lousa, D., Soares, C. M., & Breitling, R.
Affiliations
  • University of Manchester (GB)
  • Instituto de Tecnologia Química e Biológica António Xavier (PT)
  • University of Manchester
Venue
BMC Research Notes
Published
2023-09-15
Volume
16
Issue
1
Pages
343-343
ISSN
1756-0500 (ISSN-L)
OpenAlex
W4388794159
Cited by
10
References
1
Citations by year
2026: 4 · 2025: 3 · 2024: 2 · 2023: 1
FWCI
0.89
Type
journal article
Language
en
Open access
Locations
  • BMC Research Notes (publishedVersion, cc-by)
  • Research Square (acceptedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT) (submittedVersion, other-oa)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • Research Explorer (The University of Manchester) (submittedVersion, cc-by)
Funders
  • UK Research and Innovation
  • European Commission (814408, HORIZON2020)
  • Biotechnology and Biological Sciences Research Council (BB/M017702/1)
  • Natural Environment Research Council (NE/T010959/1)
  • Fundação para a Ciência e a Tecnologia (LS4FUTURE, LA/P/0087, LA/P/0087/2020, UIDP/04612/2020, UIDB/04612/2020)
  • Horizon 2020 (814408)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Biotechnology › Biochemical and biochemical processes
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Plant biochemistry and biosynthesis
Keywords
hesperetin, caffeic acid, eriodictyol, homoeriodictyol, Escherichia coli, microbial production, enzyme engineering, homology modeling, docking simulation, citrus flavonoids
MeSH terms
Caffeic Acids, Escherichia coli, Flavonoids, Hesperidin, Methyltransferases, Flavanones

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