The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
An “expressionistic” look at serrated precancerous colorectal lesions
Open accessPreprint — published as 10.1186/s13000-020-01064-1
Abstract
Background: Approximately 60% of colorectal cancer (CRC) precursor lesions are the genuinely-dysplastic conventional adenomas (cADNs). The others include hyperplastic polyps (HPs), sessile serrated lesions (SSL), and traditional serrated adenomas (TSAs), subtypes of a class of lesions collectively referred to as “serrated.” Endoscopic and histologic differentiation between cADNs and serrated lesions, and between serrated lesion subtypes can be difficult. Methods: We used in situ hybridization to verify the expression patterns in CRC precursors of 21 RNA molecules that appear to be promising differentiation markers on the basis of previous RNA sequencing studies.Results: SSLs could be clearly differentiated from cADNs by the expression patterns of 9 of the 12 RNAs tested for this purpose (VSIG1, ANXA10, ACHE, SEMG1, AQP5, LINC00520, ZIC5/2, FOXD1, NKD1). Expression patterns of all 9 in HPs were similar to those in SSLs. Nine putatively HP-specific RNAs were also investigated, but none could be confirmed as such: most (e.g., HOXD13 and HOXB13), proved instead to be markers of the normal mucosa in the distal colon and rectum, where most HPs arise. TSAs displayed mixed staining patterns reflecting the presence of serrated and dysplastic glands in the same lesion. Conclusions: Using a robust in situ hybridization protocol, we identified promising tissue-staining markers that, if validated in larger series of lesions, could facilitate more precise histologic classification of CRC precursors and, consequently, more tailored clinical follow-up of their carriers. Our findings should also fuel functional studies on the pathogenic significance of specific gene expression alterations in the initiation and evolution of CRC precursor subtypes.
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Global quantification of mammalian gene expression control
Schwanhäusser, B., Busse, D., Li, N., Dittmar, G., Schuchhardt, J., Wolf, J., Chen, W., & Selbach, M. (2011) · Nature · doi:10.1038/nature10098 · Cited by 6,566
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Metadata
- Authors
- Marra, G.
- Affiliations
- University of Zurich (CH)
- Corresponding author
- Marra, Giancarlo
- ORCID
- Marra, Giancarlo
- Venue
- Diagnostic Pathology
- Publisher
- Research Square Platform LLC
- Published
- 2020-12-02
- Volume
- 16
- Issue
- 1
- Pages
- 4-4
- ISSN
- 1746-1596 (ISSN-L)
- PMC
- PMC7797135
- OpenAlex
- W3114799556
- Cited by
- 9
- References
- 1
- Citations by year
- 2026: 1 · 2025: 3 · 2024: 1 · 2023: 2 · 2022: 1 · 2021: 1
- FWCI
- 0.46
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Diagnostic Pathology (publishedVersion, cc-by)
- Research Square (acceptedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Zurich Open Repository and Archive (University of Zurich) (acceptedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Zurich Open Repository and Archive (University of Zurich) (submittedVersion, cc-by)
- Zurich Open Repository and Archive (University of Zurich)
- Funders
- National Science Foundation
- Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (179477, 310030_179477 / 1, 310030)
- Universität Zürich
- Topics
- Health Sciences › Medicine › Oncology › Colorectal Cancer Screening and Detection
- Health Sciences › Medicine › Pathology and Forensic Medicine › Genetic factors in colorectal cancer
- Health Sciences › Medicine › Oncology › Colorectal Cancer Surgical Treatments
- Keywords
- sessile serrated lesions, traditional serrated adenoma, hyperplastic polyps, conventional adenoma, colorectal cancer precursors, gene expression biomarkers, RNA expression profiling, histological classification, ANXA10, NKD1, FOXD1
- MeSH terms
- Adenoma, Colon, Female, Humans, Male, Precancerous Conditions, Rectum, RNA, Messenger, Colorectal Neoplasms, Biomarkers, In Situ Hybridization, Adenomatous Polyps
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