Cultivar Evaluation and Mega‐Environment Investigation Based on the GGE Biplot
Abstract
Cultivar evaluation and mega‐environment identification are among the most important objectives of multi‐environment trials (MET). Although the measured yield is a combined result of effects of genotype (G), environment (E), and genotype × environment interaction (GE), only G and GE are relevant to cultivar evaluation and mega‐environment identification. This paper presents a GGE (i.e., G + GE) biplot, which is constructed by the first two symmetrically scaled principal components (PC1 and PC2) derived from singular value decomposition of environment‐centered MET data. The GGE biplot graphically displays G plus GE of a MET in a way that facilitates visual cultivar evaluation and mega‐environment identification. When applied to yield data of the 1989 through 1998 Ontario winter wheat ( Triticum aestivum L.) performance trials, the GGE biplots clearly identified yearly winning genotypes and their winning niches. Collective analysis of the yearly biplots suggests two winter wheat mega‐environments in Ontario: a minor mega‐environment (eastern Ontario) and a major one (southern and western Ontario), the latter being traditionally divided into three subareas. There were frequent crossover GE interactions within the major mega‐environment but the location groupings were variable across years. It therefore could not be further divided into meaningful subareas. It was revealed that in most years PC1 represents a proportional cultivar response across locations, which leads to noncross…
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AMMI biplots approximate only the GEI part of the phenotype.
“This is in contrast to AMMI biplots, Figure 4A, that approximate only the GEI part of the phenotype.”
From The statistical analysis of multi-environment data: modeling genotype-by-environment interaction and its genetic basis (2013) · cites this paper as Yan et al., 2000
GGE biplots approximate overall performance (G + GEI).
“GGE biplots approximate overall performance (G + GEI).”
From The statistical analysis of multi-environment data: modeling genotype-by-environment interaction and its genetic basis (2013) · cites this paper as Yan et al., 2000
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Malosetti, M., Ribaut, J.-M., & van Eeuwijk, F. A. (2013) · Frontiers in Physiology · doi:10.3389/fphys.2013.00044 · Cited by 539 · see citing works
“Effectively, the two-way table of genotype-by-environment means is exposed to a standard principal components analysis, with genotypes as objects and environments as variables (Yan et al., 2000).”
BackgroundMethodChenu, K., Cooper, M., Hammer, G. L., Mathews, K. L., Dreccer, M. F., & Chapman, S. C. (2011) · Journal of Experimental Botany · doi:10.1093/jxb/erq459 · Cited by 298 · see citing works
Genomic selection using random regressions on known and latent environmental covariates
Tolhurst, D. J., Gaynor, R. C., Gardunia, B., Hickey, J. M., & Gorjanc, G. (2022) · Theoretical and Applied Genetics · doi:10.1007/s00122-022-04186-w · Cited by 66 · see citing works
- Authors
- Yan, W., Hunt, L. A., Sheng, Q., & Szlavnics, Z.
- Affiliations
- University of Guelph (CA)
- Corresponding author
- Yan, Weikai
- ORCID
- Yan, Weikai
- Venue
- Crop Science
- Publisher
- Wiley
- Published
- 2000-05
- Volume
- 40
- Issue
- 3
- Pages
- 597-605
- ISSN
- 0011-183X (ISSN-L)
- 1435-0653
- OpenAlex
- W2040727185
- Cited by
- 1,977
- References
- 0
- Citations by year
- 2026: 113 · 2025: 137 · 2024: 174 · 2023: 173 · 2022: 158 · 2021: 152 · 2020: 138 · 2019: 111 · 2018: 89 · 2017: 83 · 2016: 80 · 2015: 85 · 2014: 72 · 2013: 81 · 2012: 66
- FWCI
- 11.18
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Crop Science (publishedVersion)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Genetics and Plant Breeding
- Life Sciences › Agricultural and Biological Sciences › Agronomy and Crop Science › Agricultural Productivity and Crop Improvement
- Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Agriculture, Soil, Plant Science
- Keywords
- GGE biplot, gene-environment interaction, cultivar evaluation, winter wheat, wheat, multi-environment trials, singular value decomposition
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