What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask
Open accessPublished version of a preprint
Abstract
Coincident with the tsunami of COVID-19–related publications, there has been a surge of studies using real-world data, including those obtained from the electronic health record (EHR). Unfortunately, several of these high-profile publications were retracted because of concerns regarding the soundness and quality of the studies and the EHR data they purported to analyze. These retractions highlight that although a small community of EHR informatics experts can readily identify strengths and flaws in EHR-derived studies, many medical editorial teams and otherwise sophisticated medical readers lack the framework to fully critically appraise these studies. In addition, conventional statistical analyses cannot overcome the need for an understanding of the opportunities and limitations of EHR-derived studies. We distill here from the broader informatics literature six key considerations that are crucial for appraising studies utilizing EHR data: data completeness, data collection and handling (eg, transformation), data type (ie, codified, textual), robustness of methods against EHR variability (within and across institutions, countries, and time), transparency of data and analytic code, and the multidisciplinary approach. These considerations will inform researchers, clinicians, and other stakeholders as to the recommended best practices in reviewing manuscripts, grants, and other outputs from EHR-data derived studies, and thereby promote and foster rigor, quality, and reliability of this rapidly growing field.
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Data from different sources and file formats are rarely uniform, especially clinical data.
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References 29 · Cited by 113
- Authors
- Kohane, I. S., Aronow, B. J., Avillach, P., Beaulieu-Jones, B. K., Bellazzi, R., Bradford, R. L., Brat, G. A., Cannataro, M., Cimino, J. J., García-Barrio, N., Gehlenborg, N., Ghassemi, M., Gutiérrez-Sacristán, A., Hanauer, D. A., Holmes, J. H., Hong, C., Klann, J. G., Loh, N. H. W., Luo, Y., Mandl, K. D., Daniar, M., Moore, J. H., Murphy, S. N., Neuraz, A., Ngiam, K. Y., Omenn, G. S., Palmer, N., Patel, L. P., Pedrera-Jiménez, M., Sliz, P., South, A. M., Tan, A. L. M., Taylor, D. M., Taylor, B. W., Torti, C., Vallejos, A. K., Wagholikar, K. B., The Consortium For Clinical Characterization Of COVID-19 By EHR (4CE), Weber, G. M., & Cai, T.
- Affiliations
- Harvard University (US)
- Cincinnati Children's Hospital Medical Center (US)
- University of Pavia (IT)
- University of North Carolina at Chapel Hill (US)
- Magna Graecia University (IT)
- University of Alabama at Birmingham (US)
- University of Toronto (CA)
- University of Michigan (US)
- University of Pennsylvania (US)
- National University Hospital (SG)
- Northwestern University (US)
- Boston Children's Hospital (US)
- Hôpital Necker-Enfants Malades (FR)
- University of Kansas (US)
- Brenner Children's Hospital (US)
- Children's Hospital of Philadelphia (US)
- Medical College of Wisconsin (US)
- Corresponding author
- Kohane, Isaac S
- ORCID
- Kohane, Isaac S
- Aronow, Bruce J
- Avillach, Paul
- Beaulieu-Jones, Brett K
- Bellazzi, Riccardo
- Bradford, Robert L
- Brat, Gabriel A
- Cannataro, Mario
- Cimino, James J
- García-Barrio, Noelia
- Gehlenborg, Nils
- Ghassemi, Marzyeh
- Gutiérrez-Sacristán, Alba
- Hanauer, David A
- Holmes, John H
- Hong, Chuan
- Klann, Jeffrey G
- Loh, Ne Hooi Will
- Luo, Yuan
- Mandl, Kenneth D
- Daniar, Mohamad
- Moore, Jason H
- Murphy, Shawn N
- Neuraz, Antoine
- Ngiam, Kee Yuan
- Omenn, Gilbert S
- Palmer, Nathan
- Patel, Lav P
- Pedrera-Jiménez, Miguel
- Sliz, Piotr
- South, Andrew M
- Tan, Amelia Li Min
- Taylor, Deanne M
- Taylor, Bradley W
- Torti, Carlo
- Vallejos, Andrew K
- Wagholikar, Kavishwar B
- Weber, Griffin M
- Cai, Tianxi
- Venue
- Journal of Medical Internet Research
- Publisher
- JMIR Publications Inc.
- Published
- 2021-03-02
- Volume
- 23
- Issue
- 3
- Pages
- e22219
- ISSN
- 1438-8871 (ISSN-L)
- PMC
- PMC7927948
- OpenAlex
- W3120118518
- Cited by
- 113
- References
- 29
- Citations by year
- 2026: 10 · 2025: 16 · 2024: 21 · 2023: 26 · 2022: 27 · 2021: 13
- FWCI
- 19.10
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- cc-by
- Locations
- Journal of Medical Internet Research (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- National University of Singapore (submittedVersion, cc-by)
- HAL (submittedVersion)
- BOA (University of Milano-Bicocca) (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- UCL Discovery (University College London) (submittedVersion)
- PubliCatt (Università Cattolica del Sacro Cuore) (submittedVersion, other-oa)
- Galter Health Sciences Library, Northwestern University (cc-by)
- Funders
- British Heart Foundation (FS/19/52/34563)
- National Institutes of Health (UL1TR001420, UL1TR001111, UL1TR001422, UL1TR002489)
- National Heart, Lung, and Blood Institute (L40 HL148910, K23HL148394)
- National Cancer Institute (U01CA198934)
- National Institute of Neurological Disorders and Stroke (K99NS114850, R01NS098023)
- U.S. National Library of Medicine (R01LM013345, T32LM012203)
- National Center for Advancing Translational Sciences
- Topics
- Health Sciences › Health Professions › Health Information Management › Electronic Health Records Systems
- Health Sciences › Health Professions › Health Information Management › Medical Coding and Health Information
- Physical Sciences › Computer Science › Artificial Intelligence › Machine Learning in Healthcare
- Keywords
- electronic health records, real-world data, critical appraisal, study quality, data completeness, data transformation, multidisciplinary research, retracted study, COVID-19 research, research rigor
- MeSH terms
- COVID-19, SARS-CoV-2, Data Collection, Humans, Publishing, Reproducibility of Results, Peer Review, Research, Electronic Health Records
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