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Cited by 27Yeasts and Rust Fungi StudiesFermentation and Sensory AnalysisPlant Pathogens and Fungal Diseases

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Diversity and molecular determination of wild yeasts in a central Washington State vineyard

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Bourret, Tyler B., Grove, Gary G., Vandemark, George J., Henick-Kling, Thomas, Glawe, Dean A.·2013·North American Fungi
DOI 10.2509/naf2013.008.015
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Abstract

Yeasts were isolated from grapes collected from a research vineyard at the WSU-IAREC, located at Prosser, WA. Species determination was based on cultural features, microscopic morphology, physiological tests and analysis of ITS and D1/D2 rDNA sequence data. Fifty-three species were found distributed among five fungal subphyla, a greater number than expected based on similar published studies. Within Saccharomycotina, 13 species in the genera Candida, Hanseniaspora, Metschnikowia, Meyerozyma, Pichia, Wickerhamomyces and Yamadazyma were determined. Isolates within the Metschnikowia pulcherrima clade appeared to possess considerable diversity. Pucciniomycotina was represented by 12 species, in Curvibasidium , Rhodosporidium, Rhodotorula, Sporidiobolus and Sporobolomyces . Five phylogenetically distinct species in the subphylum could not be assigned to any described species. Isolates in Ustilaginomycotina were placed in Pseudozyma except for a single strain determined to be Rhodotorula bacarum .Within Agaricomycotina, 17 species in the genera Cryptococcus, Cystofilobasidium , Hannaella, Holtermanniella and Mrakiella were determined. Seven species of yeast-like Pezizomycotina were found, representing classes Leotiomycetes, Dothideomycetes and Sordariomycetes. Isolates of Aureobasidium pullulans represented three phylogenetically distinct subspecific lineages.Seventeen species identified in this study were previously unreported from wine grapes and 18 species were unreported from North America. Several strains appear to represent undescribed species, including the recently described Curvibasidium rogersii .

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  1. Akaike, H. 1974. A new look at the statistical model identification. IEEE Transactions on Automatic Control 19:716-723. http://dx.doi.org/10.1109/TAC.1974.1100705 · DOI · Paper page
  2. Altekar G., Dwarkadas S., Huelsenbeck J.P. and Ronquist, F. 2004. Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20:407- 415. http://dx.doi.org/10.1093/bioinformatics/btg427 · DOI
  3. Altschul S.F., Gish W., Miller W., Meyers E.W. and Lipman D.J. 1990. Basic Local Alignment Search Tool. Journal of Molecular Biology 215:403-410. http://dx.doi.org/10.1016/S0022- 2836(05)80360-2 · DOI · Paper page
  4. Barata A., Malfeito-Ferreira M. and Loureiro V. 2012. The microbial ecology of wine grape berries. International Journal of Food Microbiology 153:243-259. http://dx.doi.org/10.1016/j.ijfoodmicro.2011.11.0 · DOI
  5. Barata A., Nobre A., Correia P., Malfeito-Ferreira M. and Loureiro V. 2006. Growth and 4- ethylphenol production by the yeast Pichia guilliermondii in Grape Juices. American Journal of Enology and Viticulture 57:133-138. http://dx.doi.org/10.1111/j.1365- 2672.2007.03631.x · DOI
  6. Begerow D., Bauer R. and Boekhout T. 2000. Phylogenetic placements of ustilaginomycetous anamorphs as deduced from nuclear LSU rDNA sequences. Part 174 of the series "Studies in Heterobasidiomycetes". Mycological Research 104:53-60. http://dx.doi.org/10.1017/S0953756299001161 · DOI
  7. Bisson L.F. 2004. The Biotechnology of Wine Yeast. Food Biotechnology 18:63-96. http://dx.doi.org/10.1081/FBT-120030385 · DOI
  8. Boekhout T. 2011. Pseudozyma Bandoni emend. Boekhout (1985) and a comparison with the yeast state of Ustilago maydis (De Candolle). In: Kurtzman CP, Fell JW, Boekhout T, eds. The Yeasts, A Taxonomic Study 5th Edn. Elsevier, Amsterdam pp. 1857-1868. http://dx.doi.org/10.1016/B978-0-444-52149- 1.00153-1 · DOI
  9. Boekhout T., Fonseca Á., Sampaio J.P., Bandoni R.J., Fell J.W. and Kwon-Chung KJ. 2011. Discussion of Teleomorphic and Anamorphic Basidiomycetous Yeasts. In: Kurtzman CP, Fell JW, Boekhout T (eds.) The Yeasts, A Taxonomic Study 5th Edn. Elsevier, Amsterdam pp. 1339- 1372. http://dx.doi.org/10.1016/B978-0-444- 52149-1.00100-2 · DOI
  10. Bourret T.B. 2012. Diversity of wild yeasts in a central Washington vineyard. Thesis. Washington State University, Pullman USA.
  11. Bourret T.B., Glawe D.A., Edwards C.G. and Henick-Kling T. 2012. Curvibasidium rogersii, a new yeast species in the Microbotryomycetes. North American Fungi 7:1-8. http://dx.doi:10.2509/naf2012.007.012 · DOI
  12. Branda E., Turchetti B., Buzzini P., Diolaiuti G., Smiraglia C. and Pecci M. 2010. Yeast and yeast- like diversity in the southernmost glacier of Europe (Calderone Glacier, Apennines, Italy). FEMS Microbiology Ecology 72:354-369. http://dx.doi.org/10.1111/j.1574- 6941.2010.00864.x · DOI
  13. Brezna B., Zenisova K., Chovanova K., Chebenova V., Krakova L., Kuchta T. and Pangallo D. 2010. Evaluation of fungal and yeast diversity in Slovakian wine-related microbial communities. Antonie Van Leeuwenhoek 98:519-529. http://dx.doi.org/10.1007/s10482-010-9469-6 · DOI
  14. Burgaud G., Arzur D., Durand L., Cambon- Bonavita M.-A. and Barbier G. 2010. Marine culturable yeasts in deep-sea hydrothermal vents: Species richness and association with fauna. FEMS Microbiology Ecology 73:121-133. http://dx.doi.org/10.1111/j.1574- 6941.2010.00881.x · DOI
  15. Cadez N., Zupan J. and Raspor P. 2010. The effect of fungicides on yeast communities associated with grape berries. FEMS Yeast Research 10:619-630. http://dx.doi.org/10.1111/j.1567- 1364.2010.00635.x · DOI
  16. Cheewangkoon R., Groenewald J.Z., Summerell B.A., Hyde K.D., To-Anun C. and Crous P.W. 2009. Myrtaceae, a cache of fungal biodiversity. Persoonia 23:55-85. http://dx.doi.org/10.3767/003158509X474752 · DOI
  17. Ciani M. and Comitini F. 2011. Non- Saccharomyces wine yeasts have a promising role in biotechnological approaches to winemaking. Annals of Microbiology 61:25-32. http://dx.doi.org/10.1007/s13213-010-0069-5 · DOI
  18. Coelho M.A., Gonc alves P. and Sampaio JP. 2011. Evidence for maintenance of sex determinants but not of sexual stages in red yeasts, a group of early diverged basidiomycetes. BMC Evolutionary Biology 11:249. http://dx.doi.org/10.1186/1471- 2148-11-249 · DOI
  19. Combina M., Mercado L., Borgo P., Elia A., Jofre V., Ganga A., Martinez C. and Catania C. 2005. Yeasts associated to Malbec grape berries from Mendoza, Argentina. Journal of Applied Microbiology 98:1055-1061. http://dx.doi.org/10.1111/j.1365- 2672.2005.02540.x · DOI
  20. Davenport R.R. 1976. Distribution of yeasts and yeast-like organisms from aerial surfaces of developing apples and grapes. In: Dickinson CH, Preece T.F., eds. Microbiology of Aerial Plant Surfaces, Academic Press, London pp. 325-359.
  21. Fell J.W., Boekhout T., Fonseca A., Scorzetti G. and Statzell-Tallman A. 2000. Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis. International Journal of Systematic and Evolutionary Microbiology 50:1351-1371. http://dx.doi.org/10.1099/00207713-50-3-1351 · DOI
  22. Fell J.W., Scorzetti G., Statzell-Tallman A., Pinel N. and Yarrow D. 2002. Recognition of the basidiomycetous yeast Sporobolomyces ruberrimus sp. nov. as a distinct species based on molecular and morphological analyses. FEMS Yeast Research 1:265-270. http://dx.doi.org/10.1111/j.1567- 1364.2002.tb00044.x · DOI
  23. Fernandez N.V., Cecilia M.M., Fontenla S.B. and Marchelli P. 2012. Yeast and yeast-like fungi associated with dry indehiscent fruits of Nothofagus nervosa in Patagonia, Argentina. FEMS Microbiology Ecology 80:179-192. http://dx.doi.org/10.1111/j.1574- 6941.2011.01287.x · DOI
  24. Fonseca Á., Boekhout T., Fell J.W. 2011. Cryptococcus Vuillemin (1901). In: Kurtzman C.P., Fell J.W. and Boekhout T., eds. The Yeasts, A Taxonomic Study 5th Edn. Elsevier, Amsterdam pp. 1661-1737. http://dx.doi.org/10.1016/B978-0-444-52149- 1.00138-5 · DOI
  25. Francesca N., Settanni L., Moschetti G., Chiurazzi M., Romano R., Aponte M. 2010. Indigenous yeast communities in the environment of "Rovello bianco" grape variety and their use in commercial white wine fermentation. World Journal of Microbiology and Biotechnology 26:337-351. http://dx.doi.org/10.1007/s11274- 009-0181-5 · DOI
  26. Fraser JA, Lim SMC, Diezmann S, Wenink EC, Arndt CG, Cox GM, Dietrich FS, Heitman J. 2006. Yeast diversity sampling on the San Juan Islands reveals no evidence for the spread of the Vancouver Island Cryptococcus gattii outbreak to this locale. FEMS Yeast Research 6:620-624. http://dx.doi.org/10.1111/j.1567- 1364.2006.00075.x · DOI
  27. Gardes M. and Bruns T.D. 1993. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Molecular Ecology 2:113-118. http://dx.doi.org/10.1111/j.1365- 294X.1993.tb00005.x · DOI
  28. Gori K., Kryger B.M., Canibe N., Øyan P.A. and Jespersen L. 2011. Occurrence and Identification of Yeast Species in Fermented Liquid Feed for Piglets. Microbial Ecology 61:146-153. http://dx.doi.org/10.1007/s00248-010-9706-6 · DOI
  29. Guindon S and Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52:696-704. http://dx.doi.org/10.1080/10635150390235520 · DOI
  30. Kurtzman C.P., Fell J.W. and Boekhout T., eds. The Yeasts, A Taxonomic Study 5th Edn. Elsevier, Amsterdam pp. 1929-1990. http://dx.doi.org/10.1016/B978-0-444-52149- 1.00156-7 · DOI
  31. Hamby K.A., Hern ndez A., Boundy-Mills K. and Zalom F.G. 2012. Associations of yeasts with spotted-wing Drosophila (Drosophila suzukii; Diptera: Drosophilidae) in cherries and raspberries. Applied and Environmental Microbiology 78:4869-73. http://dx.doi.org/10.1128/AEM.00841-12 · DOI
  32. Hamby R.K., Sims L., Issel L. and Zimmer E. 1988. Direct ribosomal RNA sequencing: Optimization of extraction and sequencing methods for work with higher plants. Plant Molecular Biology Reporter, 6:175-192. http://dx.doi.org/10.1007/BF02669591 · DOI
  33. Hibbett D.S., Binder M., Bischoff J.F. et al. 2007. A higher-level phylogenetic classification of the Fungi. Mycological Research 122:509-547. http://dx.doi.org/10.1016/j.mycres.2007.03.004 · DOI
  34. Huelsenbeck J.P. and Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755. http://dx.doi.org/10.1093/bioinformatics/17.8.7 · DOI · Paper page
  35. Jolly N.P., Augustyn O.P.H. and Pretorius I.S. 2003. The occurrence of non-Saccharomyces cerevisiae yeast species over three vintages in four vineyards and grape musts from four production regions of the Western Cape, South Africa. South African Journal of Enology and Viticulture 24:35-42.
  36. Jolly N.P., Augustyn O.P.H. and Pretorius I.S. 2006. The Role and Use of Non-Saccharomyces Yeasts in Wine Production. South African Journal for Enology and Viticulture 27:15-39.
  37. Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111-120. http://dx.doi.org/10.1007/BF01731581 · DOI · Paper page
  38. Kurtzman, C.P. 2011. Discussion of Teleomorphic and Anamorphic Ascomycetous Yeasts and Yeast- like Taxa. In: Kurtzman C.P., Fell J.W. and Boekhout T., eds. The Yeasts, A Taxonomic Study 5th Edn. Elsevier, Amsterdam pp. 293-307. http://dx.doi.org/10.1016/B978-0-444-52149- 1.00013-6 · DOI
  39. Kurtzman, C.P. and Droby S. 2001. Metschnikowia fructicola, a new ascosporic yeast with potential for biocontrol of postharvest fruit rots. Systematic and Applied Microbiology 24:395-399. http://dx.doi.org/10.1078/0723- 2020-00045 · DOI · Paper page
  40. Kurtzman, C.P. and Robnett C.J. 1998. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie Van Leeuwenhoek 73:331-371. http://dx.doi.org/10.1023/A:1001761008817 · DOI
  41. Kurtzman C.P., Fell J.W. and Boekhout T. 2011a. The Yeasts, A Taxonomic Study 5th Edn. Elsevier, Amsterdam.
  42. Kurtzman C.P., Fell J.W. and Boekhout T. 2011b. Preface. In: Kurtzman C.P., Fell J.W. and Boekhout T., eds. The Yeasts, A Taxonomic Study 5th Edn. Elsevier, Amsterdam pp. xiii. http://dx.doi.org/10.1016/B978-0-444-52149- 1.00180-4 · DOI
  43. Kurtzman C.P., Fell J.W. and Boekhout T. 2011c. Definition, Classification and Nomenclature of the Yeasts. In: Kurtzman C.P., Fell J.W. and Boekhout T., eds. The Yeasts, A Taxonomic Study 5th Edn. Elsevier, Amsterdam pp. 3-5. http://dx.doi.org/10.1016/B978-0-444-52149- 1.00001-X · DOI
  44. Kurtzman C.P., Fell J.W. and Boekhout T., eds. The Yeasts, A Taxonomic Study 5th Edn. Elsevier, Amsterdam pp. 137-144. http://dx.doi.org/10.1016/B978-0-444-52149- 1.00010-0 · DOI
  45. Kurtzman C.P., Fell J.W., Boekhout T. and Robert V. 2011e. Methods for Isolation, Phenotypic Characterization and Maintenance of Yeasts. In: Kurtzman C.P., Fell J.W. and Boekhout T., eds. The Yeasts, A Taxonomic Study 5th Edn. Elsevier, Amsterdam pp. 87-110. http://dx.doi.org/10.1016/B978-0-444-52149- 1.00007-0 · DOI
  46. Lachance M-A. 2011. Metschnikowia Kamienski (1899). In: Kurtzman C.P., Fell J.W. and Boekhout T., eds. The Yeasts, A Taxonomic Study 5th Edn. Elsevier, Amsterdam pp. 575-620. http://dx.doi.org/10.1016/B978-0-444-52149- 1.00046-X · DOI
  47. Laitila A., Wilhelmson A., Kotaviita E., Olkku J., Home S. and Juvonen R. 2006. Yeasts in an industrial malting ecosystem. Journal of Industrial Microbiology & Biotechnology 33:953- 956. http://dx.doi.org/10.1007/s10295-006- 0150-z · DOI
  48. Li S.S., Cheng C., Li Z., Chen J.Y., Yan B., Han B.Z. and Reeves M. 2010. Yeast species associated with wine grapes in China. International Journal of Food Microbiology 138:85-90. http://dx.doi.org/10.1016/j.ijfoodmicro.2010.01. 009 · DOI
  49. Limtong S., Kaewwichian R., Am-In S., Yongmanitchai W., Nakase T. and Lee C.-F. 2010. Candida asiatica sp. nov., an anamorphic ascomycetous yeast species isolated from natural samples from Thailand, Taiwan, and Japan. Antonie Van Leeuwenhoek 98:475-481. http://dx.doi.org/10.1007/s10482-010-9463-z · DOI
  50. Loureiro V. and Malfeito-Ferreira M. 2003. Spoilage yeasts in the wine industry. International Journal of Food Microbiology 86:23-50. http://dx.doi.org/10.1016/S0168- 1605(03)00246-0 · DOI
  51. Manitchotpisit P., Leathers T.D., Peterson S.W., Kurtzman C.P., Li X.L., Eveleigh D.E., Lotrakul P., Prasongsuk S., Dunlap C.A., Vermillion K.E. and Punnapayak H. 2009. Multilocus phylogenetic analyses, pullulan production and xylanase activity of tropical isolates of Aureobasidium pullulans. Mycological Research 113:1107-1120. http://dx.doi.org/10.1016/j.mycres.2009.07.008 · DOI
  52. Moln r . and Prillinger H. 2005. Analysis of yeast isolates related to Metschnikowia pulcherrima using the partial sequences of the large subunit rDNA and the actin gene; description of Metschnikowia andauensis sp. nov. Systematic and Applied Microbiology 28:717-726. http://dx.doi.org/10.1016/j.syapm.2005.05.009 · DOI
  53. Moncalvo J.-M., Lutzoni F., Rehner S., Johnson J. and Vilgalys R. 2000. Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA Sequences. Systematic Biology 49:278-305. http://dx.doi.org/10.1093/sysbio/49.2.278 · DOI
  54. Nisiotou A.A., Spiropoulos A.E. and Nychas G.J. 2007. Yeast community structures and dynamics in healthy and Botrytis-affected grape must fermentations. Applied and Environmental Microbiology 73:6705-6713. http://dx.doi.org/10.1128/AEM.01279-07 · DOI
  55. Notredame C., Higgins D.G. and Heringa J. 2000. T-Coffee: A novel method for multiple sequence alignments. Journal of Molecular Biology 302:205-17. http://dx.doi.org/10.1006/jmbi.2000.4042 · DOI
  56. Posada D. 2008. jModelTest: Phylogenetic Model Averaging. Molecular Biology and Evolution 25:1253-1256. http://dx.doi.org/10.1093/molbev/msn083 · DOI
  57. Posada D. 2009. Selection of Models of DNA Evolution with jModelTest. In Posada D., ed. Bioinformatics for DNA sequence analysis. New York: Humana Press pp. 93-112. http://dx.doi.org/10.1007/978-1-59745-251-9_5 · DOI
  58. Raspor P., Milek D.M., Polanc J., Mozina S.S. and Cadez N. 2006. Yeasts isolated from three varieties of grapes cultivated in different locations of the Dolenjska vine-growing region, Slovenia. International Journal of Food Microbiology 109:97-102. http://dx.doi.org/10.1016/j.ijfoodmicro.2010.01. 009 · DOI
  59. Renouf V., Claisse O. and Lonvaud-Funel A. 2005. Understanding the microbial ecosystem on the grape berry surface through numeration and identification of yeast and bacteria. Australian Journal of Grape Wine Research 11:316-327. http://dx.doi.org/10.1111/j.1755- 0238.2005.tb00031.x · DOI
  60. Romancino D., Di Maio S., Muriella R. and Oliva D. 2008. Analysis of non-Saccharomyces yeast populations isolated from grape musts from Sicily (Italy). Journal of Applied Microbiology 105:2248-2254. http://dx.doi.org/10.1111/j.1365- 2672.2008.03894.x · DOI
  61. Ronquist F. and Huelsenbeck J.P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574. http://dx.doi.org/10.1093/bioinformatics/btg18 · DOI
  62. Sabate J., Cano J., Esteve-Zarzoso B. and Guillamón J.M. 2002. Isolation and identification of yeasts associated with vineyard and winery by RFLP analysis of ribosomal genes and mitochondrial DNA. Microbiological Research 157:267-274. http://dx.doi.org/10.1078/0944-5013-00163 · DOI
  63. Sampaio J.P. 2011a. Rhodotorula Harrison (1928). In: Kurtzman C.P., Fell J.W. and Boekhout T., eds. The Yeasts, A Taxonomic Study 5th Edn. Elsevier, Amsterdam pp. 1873-1927. http://dx.doi.org/10.1016/B978-0-444-52149- 1.00155-5 · DOI
  64. Sampaio J.P. 2011b. Sporidiobolus Nyland (1949). In: Kurtzman C.P., Fell J.W. and Boekhout T., eds. The Yeasts, A Taxonomic Study 5th Edn. Elsevier, Amsterdam pp. 1549-1561. http://dx.doi.org/10.1016/B978-0-444-52149- 1.00130-0 · DOI
  65. Schoch C.L., Crous P.W., Groenewald J.Z. et al. 2009. A class-wide phylogenetic assessment of Dothideomycetes. Studies in Mycology 64:1-15. http://dx.doi.org/10.3114/sim.2009.64. · DOI
  66. Schoch C.L., Seifert K.A., Huhndorf S., Robert V., Spouge J.L., Levesque C.A., Chen W. and Fungal Barcoding Consortium. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences of the United States of America 109:6241-6. http://dx.doi.org/10.1073/pnas.1117018109 · DOI
  67. Scorzetti G., Fell J.W., Fonseca A. and Statzell- Tallman A. 2002. Systematics of basidiomycetous yeasts: a comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions. FEMS Yeast Research 2:495-517. http://dx.doi.org/10.1111/j.1567- 1364.2002.tb00117.x · DOI
  68. Setati M.E., Jacobson D., Andong U.-C. and Bauer F. 2012. The Vineyard Yeast Microbiome, a Mixed Model Microbial Map. PLoS ONE 7(12): e52609. http://dx.doi.org/10.1371/journal.pone.0052609 · DOI
  69. Sláviková E., Vadkertiová R. and Vránová D. 2009. Yeasts colonizing the leaves of fruit trees. Annals of Microbiology 59:419-424. http://dx.doi.org/10.1007/BF03175125 · DOI
  70. Stefanini I., Dapporto L., Legras J.L. et al. 2012. Role of social wasps in Saccharomyces cerevisiae ecology and evolution. Proceedings of the National Academy of Sciences of the United States of America 109:13398-403. http://dx.doi.org/10.1073/pnas.1208362109 · DOI
  71. Stoll M., Begerow D. and Oberwinkler F. 2005. Molecular phylogeny of Ustilago, Sporisorium, and related taxa based on combined analyses of rDNA sequences Part 219 of the series: "Studies in Heterobasidiomycetes". Mycological Research 109:342-356. http://dx.doi.org/10.1017/S0953756204002229 · DOI
  72. Sukumaran J, Holder MT. 2010. DendroPy: A Python library for phylogenetic computing. Bioinformatics 26:1569-1571. http://dx.doi.org/10.1093/bioinformatics/btq22 · DOI
  73. Tamura K., Peterson D., Peterson N., Stecher G., Nei M. and Kumar S. 2011. MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution 28:2731-2739. http://dx.doi.org/10.1093/molbev/msr121 · DOI
  74. Valerio E., Gadanho M. and Sampaio J.P. 2008. Reappraisal of the Sporobolomyces roseus species complex and description of Sporidiobolus metaroseus sp. nov. International Journal of Systematic and Evolutionary Microbiology. 58:736-741. http://dx.doi.org/10.1099/ijs.0.65580-0 · DOI
  75. Vilgalys R. and Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology, 172:4238-4246.
  76. Villa T.G. and Longo E. 1996. Microbiology of grape surfaces and its importance for wine quality. In: Morris C.E., Nicot P.C. and Nguyen- The C., eds. Aerial Plant Surface Microbiology. Plenum Press, New York, pp. 209-220.
  77. Voglmayr H., Mayer V., Maschwitz U., Moog J., Djieto-Lordon C. and Blatrix R. 2011. The diversity of ant-associated black yeasts: insights into a newly discovered world of symbiotic interactions. Fungal Biology 115:1077-1091. http://dx.doi.org/10.1016/j.funbio.2010.11.006 · DOI
  78. Wang Q.-M. and Bai F.-Y. 2008. Molecular phylogeny of basidiomycetous yeasts in the Cryptococcus luteolus lineage (Tremellales) based on nuclear rRNA and mitochondrial cytochrome b gene sequence analyses: proposal of Derxomyces gen. nov. and Hannaella gen. nov., and description of eight novel Derxomyces species. FEMS Yeast Research 8:799-814. http://dx.doi.org/10.1111/j.1567- 1364.2008.00403.x · DOI
  79. Webb J.S., Nixon M., Eastwood I.M., Greenhalgh M., Robson G.D. and Handley P.S. 2000. Fungal colonization and biodeterioration of plasticized polyvinyl chloride. Applied and Environmental Microbiology 66:3194-3200. http://dx.doi.org/10.1128/AEM.66.8.3194- 3200.2000 · DOI
  80. White T.J., Bruns T., Lee S. and Taylor J.W. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Sninsky J.J., White T.J., eds. PCR Protocols: A Guide to Methods and Applications. Academic Press, Inc., New York, pp. 315-322.
  81. Wickerham L.J. 1951. Taxonomy of yeasts. United States Department of Agriculture Technical Bulletin 1029.
  82. Wuczkowski M. and Prillinger H. 2004. Molecular identification of yeasts from soils of the alluvial forest national park along the river Danube downstream of Vienna, Austria ("Nationalpark Donauauen"). Microbiological Research 159:263-275. http://dx.doi.org/10.1016/j.micres.2004.05.001 · DOI
  83. Wuczkowski M., Passoth V., Turchetti B., et al. 2011. Description of Holtermanniella gen. nov., including Holtermanniella takashimae sp. nov. and four new combinations, and proposal of the order Holtermanniales to accommodate tremellomycetous yeasts of the Holtermannia clade. International Journal of Systematic and Evolutionary Microbiology 61:680-689. http://dx.doi.org/10.1099/ijs.0.019737-0 · DOI
  84. Zalar P., Gostincar C., Ursic V., Gunde-Cimerman N., de Hoog G.S. and Sudhadham M. 2008. Redefinition of Aureobasidium pullulans and its varieties. Studies in Mycology 61:21-38. http://dx.doi.org/10.3114/sim.2008.61.02 · DOI
  85. Zhang N., Castlebury L.A., Miller A.N., Huhndorf S.M., Schoch C.L., Seifert K.A., Rossman A.Y., Rogers J.D., Kohlmeyer J., Volkmann-Kohlmeyer B. and Sung G.H. 2006. An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny. Mycologia 98:1076-1087. http://dx.doi.org/10.3852/mycologia.98.6.1076 · DOI
  86. Zwickl D.J. 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, The University of Texas at Austin.

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Metadata

Authors
Bourret, T. B., Grove, G. G., Vandemark, G. J., Henick-Kling, T., & Glawe, D. A.
Affiliations
  • Washington State University (US)
  • Agricultural Research Service (US)
  • University of Washington (US)
Corresponding author
Glawe, Dean A.
ORCID
Venue
North American Fungi
Publisher
Pacific Northwest Fungi Project
Published
2013-11-29
Volume
8
Issue
0
Pages
1
ISSN
1937-786X (ISSN-L)
DOI
10.2509/naf2013.008.015
OpenAlex
W2086796050
Cited by
27
References
0
Citations by year
2026: 1 · 2023: 2 · 2022: 5 · 2021: 6 · 2020: 2 · 2019: 1 · 2018: 2 · 2017: 2 · 2016: 1 · 2015: 3 · 2014: 2
FWCI
0.90
Type
journal article
Language
en
Open access
Locations
North American Fungi (publishedVersion)
Funders
Washington State University
Topics
  • Life Sciences › Immunology and Microbiology › Microbiology › Yeasts and Rust Fungi Studies
  • Life Sciences › Agricultural and Biological Sciences › Food Science › Fermentation and Sensory Analysis
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Pathogens and Fungal Diseases
Keywords
wild yeast, grapevine, wine grapes, yeast species diversity, ITS sequences, Saccharomycotina, Pucciniomycotina, Ustilaginomycotina, Agaricomycotina, Pezizomycotina, Aureobasidium pullulans, new records, undescribed species

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