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Engineering Excitonically-Coupled Dimers in an Artificial Protein for Light Harvesting via Molecular Dynamics Simulations
Open accessPreprint — published as 10.1002/pro.4579 · Paper page
Abstract
In photosynthesis, pigment – protein complexes achieve outstanding photoinduced charge separation efficiencies through a set of strategies in which excited states delocalisation over multiple pigments (‘excitons’) and charge-transfer states play key roles. These concepts, and their implementation in bioinspired artificial systems, are attracting increasing attention due to the vast potential that could be tapped by realising efficient photochemical reactions. In particular, de novo designed proteins provide a diverse structural toolbox that can be used to manipulate the geometric and electronic properties of bound chromophore molecules. However, achieving excitonic and charge-transfer states requires closely spaced chromophores, a non-trivial aspect since a strong binding with the protein matrix needs to be maintained. Here, we show how a general-purpose artificial protein can be optimised via molecular dynamics simulations to improve its binding capacity of a chlorophyll derivative, achieving complexes in which chromophores form two closely spaced and strongly interacting dimers. Based on spectroscopy results and computational modelling, we propose each dimer is excitonically coupled, and displays signatures of charge-transfer state mixing. This work could open new avenues for the rational design of chromophore – protein complexes with advanced functionalities.
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Cites
Highly accurate protein structure prediction with AlphaFold
Jumper, J., Evans, R., Pritzel, A., Green, T., Figurnov, M., Ronneberger, O., Tunyasuvunakool, K., Bates, R., Žídek, A., Potapenko, A., et al. (2021) · Nature · doi:10.1038/s41586-021-03819-2 · Cited by 43,764
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Metadata
- Authors
- Curti, M., Maffeis, V., Duarte, L. G. T. A., Shareef, S., Hallado, L. X., Curutchet, C., & Romero, E.
- Affiliations
- Institut Català d'Investigació Química (ES)
- Lyon 1 Université (FR)
- Institut Català d'Investigació Química
- Universitat de Barcelona (ES)
- Corresponding author
- Curti, Mariano
- Romero, Elisabet
- ORCID
- Venue
- Protein Science
- Publisher
- American Chemical Society (ACS)
- Published
- 2022-10-27
- Volume
- 32
- Issue
- 3
- Pages
- e4579-e4579
- ISSN
- 0961-8368 (ISSN-L)
- PMC
- PMC9951196
- OpenAlex
- W4318476483
- Cited by
- 9
- References
- 1
- Citations by year
- 2026: 2 · 2025: 3 · 2024: 3 · 2023: 1
- FWCI
- 1.35
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Protein Science (publishedVersion, cc-by-nc-nd)
- ChemRxiv (acceptedVersion, cc-by-nc-nd)
- PubMed Central (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- Dipòsit Digital de la Universitat de Barcelona (Universitat de Barcelona) (submittedVersion, public-domain)
- Funders
- European Commission (754510, 10.13039/501100011033, MDM-2017-0767, 801474, 13039/501100011033, 501100011033, HORIZON2020, /AEI/10.13039/501100011033, CEX2019-000925-S)
- Ministerio de Ciencia e Innovación (.13039/501100011033, 10.13039, / AEI/10, CEX2019- 000925-S, 10.13039/501100011033/, 501100011033, PID2020, CEX2019, PID2020‐115812GB‐I00, CEX2019‐0009, MDM‐2017‐0767, /AEI/10.13039/ 501100011033)
- Barcelona Supercomputing Center
- Agencia Estatal de Investigación (PID2020-115812GB-I00, AEI//10.13039/501100011033/, 501100011033, CEX2019-000925-S, 10.13039/501100011033, 13039, .13039/501100011033, 10.13039, AEI/MICINN/10.13039/501100011033, AEI/10, MDM-2017-0767)
- H2020 European Research Council (801474, 805524, 754510)
- Topics
- Physical Sciences › Chemistry › Physical and Theoretical Chemistry › Photochemistry and Electron Transfer Studies
- Physical Sciences › Physics and Astronomy › Atomic and Molecular Physics, and Optics › Spectroscopy and Quantum Chemical Studies
- Physical Sciences › Materials Science › Materials Chemistry › Porphyrin and Phthalocyanine Chemistry
- Keywords
- artificial proteins, excitonic coupling, chromophore dimers, chlorophyll derivatives, light harvesting, charge-transfer states, de novo protein design, chromophore binding, exciton delocalization, molecular dynamics simulation, photogenerated charge separation
- MeSH terms
- Chlorophyll, Photosynthesis, Light-Harvesting Protein Complexes, Molecular Dynamics Simulation
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