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A class-wide phylogenetic assessment of Dothideomycetes
Open accessAbstract
We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon.
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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Stamatakis, A. (2006) · Bioinformatics · doi:10.1093/bioinformatics/btl446 · Cited by 15,582
Cited by
Hardoim, P. R., van Overbeek, L. S., Berg, G., Pirttilä, A. M., Compant, S., Campisano, A., Döring, M., & Sessitsch, A. (2015) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00050-14 · Cited by 2,708
Woudenberg, J. H. C., Groenewald, J. Z., Binder, M., & Crous, P. W. (2013) · Studies in Mycology · doi:10.3114/sim0015 · Cited by 835
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Ariyawansa, H. A., Hyde, K. D., Jayasiri, S. C., Buyck, B., Chethana, K. W. T., Dai, D. Q., Dai, Y. C., Daranagama, D. A., Jayawardena, R. S., Lücking, R., et al. (2015) · Fungal Diversity · doi:10.1007/s13225-015-0346-5 · Cited by 751
Self-citationMaharachchikumbura, S. S. N., Hyde, K. D., Jones, E. B. G., McKenzie, E. H. C., Bhat, J. D., Dayarathne, M. C., Huang, S.-K., Norphanphoun, C., Senanayake, I. C., Perera, R. H., et al. (2016) · Fungal Diversity · doi:10.1007/s13225-016-0369-6 · Cited by 439
Self-citationFungi in the Marine Environment: Open Questions and Unsolved Problems
Amend, A., Burgaud, G., Cunliffe, M., Edgcomb, V. P., Ettinger, C. L., Gutiérrez, M. H., Heitman, J., Hom, E. F. Y., Ianiri, G., Jones, A. C., et al. (2019) · mBio · doi:10.1128/mbio.01189-18 · Cited by 339
Metadata
- Authors
- Schoch, C. L., Crous, P. W., Groenewald, J. Z., Boehm, E. W. A., Burgess, T. I., de Gruyter, J., de Hoog, G. S., Dixon, L. J., Grube, M., Gueidan, C., Harada, Y., Hatakeyama, S., Hirayama, K., Hosoya, T., Huhndorf, S. M., Hyde, K. D., Jones, E. B. G., Kohlmeyer, J., Kruys, Å., Li, Y. M., Lücking, R., Lumbsch, H. T., Marvanová, L., Mbatchou, J. S., McVay, A. H., Miller, A. N., Mugambi, G. K., Muggia, L., Nelsen, M. P., Nelson, P., Owensby, C. A., Phillips, A. J. L., Phongpaichit, S., Pointing, S. B., Pujade-Renaud, V., Raja, H. A., Plata, E. R., Robbertse, B., Ruibal, C., Sakayaroj, J., Sano, T., Selbmann, L., Shearer, C. A., Shirouzu, T., Slippers, B., Suetrong, S., Tanaka, K., Volkmann-Kohlmeyer, B., Wingfield, M. J., Wood, A. R., Woudenberg, J. H. C., Yonezawa, H., Zhang, Y., & Spatafora, J. W.
- Venue
- Studies in Mycology
- Published
- 2009
- Volume
- 64
- Pages
- 1-15
- ISSN
- 0166-0616 (ISSN-L)
- OpenAlex
- W2153780133
- Cited by
- 610
- References
- 1
- FWCI
- 12.08
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Schoch, C. L., Crous, P. W., Groenewald, J. Z., Boehm, E. W. A., Burgess, T. I., de Gruyter, J., de Hoog, G. S., Dixon, L. J., Grube, M., Gueidan, C., Harada, Y., Hatakeyama, S., Hirayama, K., Hosoya, T., Huhndorf, S. M., Hyde, K. D., Jones, E. B. G., Kohlmeyer, J., Kruys, Å., . . . Spatafora, J. W. (2009). A class-wide phylogenetic assessment of Dothideomycetes. Studies in Mycology. https://doi.org/10.3114/sim.2009.64.01
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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