Cited by 51CRISPR and Genetic EngineeringPlant Genetic and Mutation StudiesGenetically Modified Organisms Research

A CRISPR way for accelerating cereal crop improvement: Progress and challenges

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Basu, Umer, Riaz Ahmed, Syed, Bhat, Basharat Ahmad, Anwar, Zunaira, Ali, Ahmad, Ijaz, Aqsa, Gulzar, Addafar, Bibi, Amir +6 more·2023·Frontiers in Genetics

Abstract

Humans rely heavily on cereal grains as a key source of nutrients, hence regular improvement of cereal crops is essential for ensuring food security. The current food crisis at the global level is due to the rising population and harsh climatic conditions which prompts scientists to develop smart resilient cereal crops to attain food security. Cereal crop improvement in the past generally depended on imprecise methods like random mutagenesis and conventional genetic recombination which results in high off targeting risks. In this context, we have witnessed the application of targeted mutagenesis using versatile CRISPR-Cas systems for cereal crop improvement in sustainable agriculture. Accelerated crop improvement using molecular breeding methods based on CRISPR-Cas genome editing (GE) is an unprecedented tool for plant biotechnology and agriculture. The last decade has shown the fidelity, accuracy, low levels of off-target effects, and the high efficacy of CRISPR technology to induce targeted mutagenesis for the improvement of cereal crops such as wheat, rice, maize, barley, and millets. Since the genomic databases of these cereal crops are available, several modifications using GE technologies have been performed to attain desirable results. This review provides a brief overview of GE technologies and includes an elaborate account of the mechanisms and applications of CRISPR-Cas editing systems to induce targeted mutagenesis in cereal crops for improving the desired traits. Further, we describe recent developments in CRISPR-Cas-based targeted mutagenesis through base editing and prime editing to develop resilient cereal crop plants, possibly providing new dimensions in the field of cereal crop genome editing.

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Crossref · 10.3389/fgene.2022.866976

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  • Several metal ions act as carcinogens and toxins to animals and are usually accumulated in food chains through anthropogenic activities.

    “Several metal ions act as potent carcinogens and toxins to animals, usually accumulated in food chains through anthropogenic activities (Arora and Chauhan, 2021; Priyadarshanee et al., 2022; Basu et al., 2023).”

    From Plant hyperaccumulators: a state-of-the-art review on mechanism of heavy metal transport and sequestration (2025) · cites this paper as Basu et al., 2023

    The Introduction discusses cereal nutrition and crop stresses, while the Rice section mentions editing a cadmium-related gene. Neither passage addresses whether metal ions are carcinogenic or toxic to animals, or whether anthropogenic activities cause their accumulation in food chains. Searches for those terms and for heavy-metal bioaccumulation found no supporting passage in our copy. (LLM, conf=0.74)

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References 209 · Cited by 51

Research works printed but not linked: 3

  1. Endo M. Mikami M. Endo A. (2018). Genome editing in plants by engineered CRISPR- Cas9 recognizing NG PAM. Nat. Plants, 21– 27. 30531939
  2. Lee J. K. Jeong E. Lee J. Jung M. Shin E. Kim Y. H. (2018). Directed evolution of CRISPR-Cas9 to increase its specificity. Nat. Commun. 9 (1), 1– 10. 10.1038/s41467-018-05477-x 30082838 PMC6078992 · DOI · Paper page
  3. Zong Y. Song Q. Li C. Jin S. Zhang D. Wang Y. (2018). Efficient C-to-T base editing in plants using a fusion of nCas9 and human APOBEC3A. Nat. Biotechnol. 36 (10), 950– 953. 10.1038/nbt.4261 30272679 · DOI

Authors
Basu, U., Riaz Ahmed, S., Bhat, B. A., Anwar, Z., Ali, A., Ijaz, A., Gulzar, A., Bibi, A., Tyagi, A., Nebapure, S. M., Goud, C. A., Ahanger, S. A., Ali, S., & Mushtaq, M.
Affiliations
  • Indian Agricultural Research Institute (IN)
  • University of Kashmir (IN)
  • Pakistan Institute of Engineering and Applied Sciences (PK)
  • Huazhong Agricultural University (CN)
  • Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir (IN)
  • University of Agriculture Faisalabad (PK)
  • Yeungnam University (KR)
  • Professor Jayashankar Telangana Agricultural University (IN)
  • ICAR-National Bureau Of Plant Genetic Resources (IN)
Corresponding author
  • Ahanger, Shafat Ahmad
  • Ali, Sajad
  • Mushtaq, Muntazir
Venue
Frontiers in Genetics
Published
2023-01-06
Volume
13
Pages
866976-866976
ISSN
1664-8021 (ISSN-L)
OpenAlex
W4313649541
Cited by
51
References
209
Citations by year
2026: 17 · 2025: 16 · 2024: 13 · 2023: 5
FWCI
1.35
Type
journal article
Language
en
Open access
Locations
  • Frontiers in Genetics (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
University Grants Commission
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › CRISPR and Genetic Engineering
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Genetic and Mutation Studies
  • Life Sciences › Agricultural and Biological Sciences › Plant Science › Genetically Modified Organisms Research
Keywords
CRISPR/Cas genome editing, cereals, targeted mutagenesis, food security, crop resilience, base editing, prime editing, wheat, rice, maize, barley, millet, off-target effects, molecular breeding

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