Antibody specific B-cell epitope predictions: leveraging information from antibody–antigen protein complexes

Cited by (149)

Items 101–149 of 149

1. Immunogenic mapping of potential epitopes from Tc-CTL-1 for the diagnosis of murine toxocariasis
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5. Presentation of Neutralizing Antibodies in Single- or Pooled-Convalescent Immune Plasma from Donors to Prevent the Current SARS-CoV-2 Pandemic
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6. The Anti-Proliferative Effect of a Newly-Produced Anti-PSCA-Peptide Antibody by Multiple Bioinformatics Tools, on Prostate Cancer Cells
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7. Estimated limits of organism-specific training for epitope prediction
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8. Identification of IgE Epitopes and Analysis of Critical Amino Acid Residues in Fish Parvalbumin
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9. Immunogenicity and structural efficacy of P41 of Plasmodium sp. as potential cross-species blood-stage malaria vaccine
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10. Estimating the Limits of Organism-Specific Training for Epitope Prediction
    Jodie Ashford, Anikó Ekárt, Felipe Campelo · 2023 · IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
11. Linear B-cell epitope prediction for SARS and COVID-19 vaccine design: Integrating balanced ensemble learning models and resampling strategies
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12. Interactions Between the Innate and Adaptive Immune Responses
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13. Immunoinformatic Prediction of HIV-1 Glycoprotein gp120 and Nef Epitopes Conjugated to HBsAg-Binding Protein (SBP) to Induce the Humoral and Cellular Immune Response
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14. Recognition mechanisms of multiple sclerosis antibody MS with antigens EBNA1 and GlialCAM via molecular dynamics simulations
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15. Analysis of B-Cell Epitope on E8l Protein Monkeypox Virus as a Peptide-Based Vaccine Candidate
    Faris Rega Riswana, Tyas Nyonita Punjungsari · 2025 · BIO Web of Conferences
16. Designing a novel and effective multi-epitope subunit vaccine against human astrovirus using reverse vaccinology approach
    Suliman Khan, Ishaq Khan, Syed Shujait Ali, Zahid Hussain, Shahid Ali, Arshad Iqbal · 2026 · Brazilian Journal of Microbiology
17. Strain localization in wearable integrated electronics using dot pattern
    Pouria Hajizadeh, Naser Naserifar · 2023 · Engineering Research Express
18. Structural and immunogenicity analysis of reconstructed ancestral and consensus P48/45 for cross-species anti malaria transmission-blocking vaccine
    Kevin Nathanael Ramanto, Rizky Nurdiansyah · 2021 · Computational Biology and Chemistry
19. Jupytope: computational extraction of structural properties of viral epitopes
    Shamima Rashid, Teng Ann Ng, Chee Keong Kwoh · 2022 · Briefings in Bioinformatics
20. Flexibility-aware graph-based algorithm improves antigen epitopes identification
    Chuang Gao, Yiqi Wang, Jie Luo, Ziyi Zhou, Zhiqiang Dong, Liang Zhao · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
21. Characterizing antibodies binding to the same epitope reveals limited contribution by heavy chain CDR3 sequences relative to other CDRs
    Jarjapu Mahita, Haeuk Kim, Marcus Fabiano de Almeida Mendes, Eve Richardson, Jason Greenbaum, Alessandro Sette, Morten Nielsen, Bjoern Peters · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
22. A computational study of B-cell epitopes of wheat allergens and identification of its IgE binding residues
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23. Gary Nash: Preeminent Scholar and Committed Educator
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24. Inmunonutrición en enfermedades autoinmunitarias
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25. Structure-Free Antibody Paratope Similarity Prediction for in silico Epitope Binning via Protein Language Models
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26. In silico analysis of NHP2 membrane protein, a novel vaccine candidate present in the RD7 region of Mycobacterium tuberculosis
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27. In silico analysis of NHP2 membrane protein, a novel vaccine candidate present in the RD7 region of Mycobacterium tuberculosis
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28. In silico analysis of NHP2 membrane protein, a novel vaccine candidate present in the RD7 region of Mycobacterium tuberculosis
    Kaviya Parambath Kootery, Suma Sarojini · 2023 · Biologia
29. Immunodominant conserved moieties on spike protein of SARS-CoV-2 renders virulence factor for the design of epitope-based peptide vaccines
    Subhashree Mohapatra, Santosh Kumar, Shashank Kumar, Atul Kumar Singh, Bismita Nayak · 2023 · VirusDisease
30. Ensemble Modeling of Epitopes and Non-Epitopes Prediction from Protein Sequences of Zika and Dengue Viruses
    Priyanka R. Rajmane, Simran Khiani · 2024 · IEEE International Students' Conference on Electrical, Electronics and Computer Science (SCEECS)
31. Vaccinomics
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32. In-Silico Design and Immunoinformatics Analysis of a Multi-Epitope Vaccine Constructs, Based on Salmonella Pathogenesis Factors, for Use in Broiler Veterinary Medicine
    Yuliana I. Mora-Ochoa, Lenin Ramírez-Cando · 2024 · SSRN Electronic Journal
33. Profiling of linear B-cell epitopes against human coronaviruses in pooled sera sampled early in the COVID-19 pandemic
    Emil Bach, Mustafa Ghanizada, Nikolaj Kirkby, Søren Buus, Thomas Østerbye · 2024 · Open Research Europe
34. B Cell signaling and immunosuppression in geriatrics: A review
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35. Screening and Characterization of B‐Cell Epitopes of Porcine Respiratory Coronavirus Receptor Binding Domain Using Monoclonal Antibodies
    Aiping Wang, Jiachen Wang, Jingming Zhou, Yumei Chen, Hongliang Liu, Chao Liang, Xifang Zhu, Enping Liu, Sixuan Wu, Yanhua Qi et al. · 2025 · Microbiology and Immunology
36. Pocket Restraints Guided by B-Cell Epitope Prediction Improves Chai-1 Antibody-Antigen Structure Modeling
    Joakim Nøddeskov Clifford, Morten Nielsen · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
37. HyperBind2: Multi-Shot Learning Enables Progressive Improvement in Computational Antibody Discovery
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38. Deep learning for B-cell epitope prediction and receptor–antigen binding prediction
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39. Design and development of a novel recombinant multi-epitope antigen: A promising candidate for melioidosis disease diagnosis
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40. Identification of a novel monoclonal antibody derived from the lumpy skin disease virus ORF123 that confers cross-binding and cross-neutralizing activity against Capripoxvirus members
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41. Bioinformatics-based B-cell epitope identification from Leptospira interrogans outer membrane proteins LIC11574 and LIC13411 for the rational development of a multi-epitope anti-Leptospira vaccine
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42. Pan-genome and reverse vaccinology for a multi-epitope vaccine against circulating post-2022 Monkeypox virus strains
    Md Al Saber, Md. Hasan Jafre Shovon, Md. Imtiaz, Sadia Jannat Tauhida, Sowmitro Das, Md Mohaimenul Islam Tareq, Miss Ismoth Ara Tripty, Md Ridoy Hossain, Labib Shahriar Siam, Md Nazmul Hasan Zilani et al. · 2026 · PLoS ONE
43. A novel monoclonal antibody targeting the hemagglutinin–neuraminidase of peste des petits ruminants virus maintains neutralizing activity by blocking viral adsorption and receptor interaction
    Ruiqi Li, Ashenafi Kiros Wubshet, Shasha Wang, Xiaolong Bai, Lingling Tie, Zaib Ur Rehman, Xiaolong Gao, Huibao Wang, Yu Han, Xiangwei Wang et al. · 2026 · Journal of Virology
44. PLMCE: A Protein Language Model Approach to Predicting Conformational Epitopes
    Lisha Guo, Hong Tao, Xuan Zhang, Ming Jing · 2026 · International Conference on Computer Supported Cooperative Work in Design (CSCWD)
45. In silico discovery and serological validation of Trypanosoma cruzi-specific B-cell epitopes for high-precision Chagas disease diagnosis
    Mayron Antonio Candia-Puma, Luis Daniel Goyzueta-Mamani, Haruna Luz Barazorda-Ccahuana, Raquel S.B. Câmara, Isabela A.G. Pereira, Ana L. Silva, Maiza M Rodrigues, Bárbara P.N. Assis, Ana T. Chaves, Laís V.A. Corrêa et al. · 2026 · Frontiers in Microbiology
46. Antigen–antibody interactions in precision medicine: Molecular mechanisms, targeted drug delivery, and nanomedicine applications
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47. Pocket restraints guided by B‐cell epitope prediction improve Chai‐1 antibody–antigen structure modeling
    Joakim Nøddeskov Clifford, Morten Nielsen · 2026 · Protein Science
48. Label efficient antibody specific epitope prediction by cluster balanced uncertainty sampling
    Lei Du, Wanying Li, Peng Zan, Xijun He · 2026 · IEEE China Conference on System Simulation Technology and its Applications (CCSSTA)
49. Multi-epitope vaccine targeting SARS-CoV-2 omicron S and N proteins promotes enhanced immunity: a computational approach
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