CowPI: a rumen microbiome focussed version of the PICRUSt functional inference software

Wilkinson, Toby J., Huws, Sharon A., Edwards, Joan E., Kingston-Smith, Alison H., Siu-Ting, Karen, Hughes, Martin, Rubino, Francesco, Friedersdorff, Maximillian +1 more·2018·Frontiers in Microbiology
DOI 10.3389/fmicb.2018.01095

Cited by (161)

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  26. The Protective Effect of the Feed Additive-Adaptogen on the Rumen Microbiota of Sheep from Pathogenic Microorganisms
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  27. Changes in Soil Microecology of Gangue Reclamation Areas after 10 Years of in Situ Restoration with Herbaceous Plants ( Artemisia Sacrorum and Imperata Cylindrica) and Trees ( Populus Spp.)
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  30. Application of meta-omics techniques to the rumen microbiome of dairy cows
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  31. Exploring the effects of short-course antibiotics on children's gut flora by using 16S rRNA gene sequencing: a case-control study
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  32. Application of multi-omics to investigate the effect of Pinus koraiensis cone essential oil on rumen methane emission, microbial community, and metabolites
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  34. Integrating microbial abundance time series with fermentation dynamics of the rumen microbiome via mathematical modelling
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  36. Additional file 12 of Correlation between gut microbiome and cognitive impairment in patients undergoing peritoneal dialysis
    Wang, Jingjing, Wu, Siyang, Zhang, Jin, Li, Yuanyuan, Yonggui Wu, Xiangming Qi · 2024 · Figshare
  37. Additional file 2 of Host metabolome and faecal microbiome shows potential interactions impacted by age and weaning times in calves
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  38. Additional file 8 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
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  39. Additional file 7 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, Plaizier, Jan C., Khafipour, Ehsan · 2024 · Figshare
  40. Additional file 5 of Correlation between gut microbiome and cognitive impairment in patients undergoing peritoneal dialysis
    Wang, Jingjing, Wu, Siyang, Zhang, Jin, Li, Yuanyuan, Yonggui Wu, Qi, Xiangming · 2024 · Figshare
  41. Additional file 1 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, Plaizier, Jan C., Khafipour, Ehsan · 2024 · Figshare
  42. Additional file 5 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, Plaizier, Jan C., Khafipour, Ehsan · 2024 · Figshare
  43. Additional file 2 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, Plaizier, Jan C., Khafipour, Ehsan · 2024 · Figshare
  44. Additional file 1 of Metataxonomic and metabolomic profiling revealed Pinus koraiensis cone essential oil reduced methane emission through affecting ruminal microbial interactions and host-microbial metabolism
    Choi, Y., Lee, S. J., Kim, H. S., Eom, J. S., Jo, S. U., Guan, L. L., Lee, S. S. · 2024 · Figshare
  45. Additional file 8 of Correlation between gut microbiome and cognitive impairment in patients undergoing peritoneal dialysis
    Wang, Jingjing, Wu, Siyang, Zhang, Jin, Li, Yuanyuan, Wu, Yonggui, Qi, Xiangming · 2024 · Figshare
  46. Additional file 4 of Correlation between gut microbiome and cognitive impairment in patients undergoing peritoneal dialysis
    Wang, Jingjing, Wu, Siyang, Zhang, Jin, Li, Yuanyuan, Wu, Yonggui, Qi, Xiangming · 2024 · Figshare
  47. Additional file 1 of Changes in the nasopharyngeal and oropharyngeal microbiota in pediatric obstructive sleep apnea before and after surgery: a prospective study
    Lucheng Fang, Aikebaier Tuohuti, Wanyue Cai, Xiong Chen · 2024 · Figshare
  48. Additional file 9 of Correlation between gut microbiome and cognitive impairment in patients undergoing peritoneal dialysis
    Wang, Jingjing, Wu, Siyang, Zhang, Jin, Li, Yuanyuan, Wu, Yonggui, Qi, Xiangming · 2024 · Figshare
  49. Additional file 11 of Correlation between gut microbiome and cognitive impairment in patients undergoing peritoneal dialysis
    J. Y. WANG, Wu, Siyang, Zhang, Jin, Li, Yuanyuan, Yonggui Wu, Qi, Xiangming · 2024 · Figshare
  50. Additional file 2 of Correlation between gut microbiome and cognitive impairment in patients undergoing peritoneal dialysis
    J. Y. WANG, Wu, Siyang, Zhang, Jin, Li, Yuanyuan, Wu, Yonggui, Qi, Xiangming · 2024 · Figshare
  51. Additional file 6 of Correlation between gut microbiome and cognitive impairment in patients undergoing peritoneal dialysis
    J. Y. WANG, Wu, Siyang, Zhang, Jin, Li, Yuanyuan, Wu, Yonggui, Qi, Xiangming · 2024 · Figshare
  52. Additional file 1 of Correlation between gut microbiome and cognitive impairment in patients undergoing peritoneal dialysis
    J. Y. WANG, Wu, Siyang, Zhang, Jin, Li, Yuanyuan, Yonggui Wu, Qi, Xiangming · 2023 · Figshare
  53. Additional file 3 of Correlation between gut microbiome and cognitive impairment in patients undergoing peritoneal dialysis
    Wang, Jingjing, Wu, Siyang, Zhang, Jin, Li, Yuanyuan, Wu, Yonggui, Qi, Xiangming · 2024 · Figshare
  54. Additional file 10 of Correlation between gut microbiome and cognitive impairment in patients undergoing peritoneal dialysis
    Wang, Jingjing, Wu, Siyang, Zhang, Jin, Li, Yuanyuan, Wu, Yonggui, Qi, Xiangming · 2024 · Figshare
  55. Additional file 7 of Correlation between gut microbiome and cognitive impairment in patients undergoing peritoneal dialysis
    Wang, Jingjing, Wu, Siyang, Zhang, Jin, Li, Yuanyuan, Yonggui Wu, Qi, Xiangming · 2024 · Figshare
  56. Additional file 1 of Host metabolome and faecal microbiome shows potential interactions impacted by age and weaning times in calves
    Nida Amin, Sarah Schwarzkopf, Johanna Tröscher-Mußotter, Camarinha-Silva, Amélia, Sven Dänicke, Korinna Huber, Jana Frahm, Jana Seifert · 2024 · Figshare
  57. Additional file 3 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, Plaizier, Jan C., Khafipour, Ehsan · 2024 · Figshare
  58. Additional file 4 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, Plaizier, Jan C., Khafipour, Ehsan · 2024 · Figshare
  59. Additional file 6 of Postbiotics from Saccharomyces cerevisiae fermentation stabilize microbiota in rumen liquid digesta during grain-based subacute ruminal acidosis (SARA) in lactating dairy cows
    Guo, Junfei, Zhengxiao Zhang, Guan, Le Luo, Ilkyu Yoon, J. C. B. Plaizier, Khafipour, Ehsan · 2024 · Figshare
  60. The rumen microbiome: Abrief review
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