A Review of Microsatellite Markers and Their Applications in Rice Breeding Programs to Improve Blast Disease Resistance

Primer3 on the WWW for General Users and for Biologist Programmers

Rozen, S., & Skaletsky, H. (2003) · Humana Press eBooks · doi:10.1385/1-59259-192-2:365 · Cited by 15,068

Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies

Falush, D., Stephens, M., & Pritchard, J. K. (2003) · Genetics · doi:10.1093/genetics/164.4.1567 · Cited by 8,006

A Draft Sequence of the Rice Genome ( Oryza sativa L. ssp. indica )

Yu, J. M., Hu, S., Wang, J., Wong, G. K., Liu, B., Liu, B., Deng, Y., Dai, L., Zhou, Y., Zhang, X., et al. (2002) · Science · doi:10.1126/science.1068037 · Cited by 4,239

The map-based sequence of the rice genome

International Rice Genome Sequencing Project, & Sasaki, T. (2005) · Nature · doi:10.1038/nature03895 · Cited by 3,843

Nuclear DNA content of some important plant species

Arumuganathan, K., & Earle, E. D. (1991) · Plant Molecular Biology Reporter · doi:10.1007/bf02672069 · Cited by 3,237

A Draft Sequence of the Rice Genome ( Oryza sativa L. ssp. japonica )

Goff, S. A., Ricke, D. O., Lan, T., Presting, G. G., Wang, R., Dunn, M., Glazebrook, J., Sessions, A., Oeller, P. W., Varma, H., et al. (2002) · Science · doi:10.1126/science.1068275 · Cited by 2,838

Hypervariability of simple sequences as a general source for polymorphic DNA markers

Tautz, D. (1989) · Nucleic Acids Research · doi:10.1093/nar/17.16.6463 · Cited by 2,330

A Receptor Kinase-Like Protein Encoded by the Rice Disease Resistance Gene, Xa21

Song, W.-Y., Wang, G., Chen, L.-L., Kim, H.-S., Pi, L.-Y., Holsten, T., Gardner, J., Wang, B., Zhai, W.-X., Zhu, L.-H., et al. (1995) · Science · doi:10.1126/science.270.5243.1804 · Cited by 2,274

A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene.

Litt, M., & Luty, J. A. (1989) · PubMed · Cited by 1,962

Comparison of Next-Generation Sequencing Systems

Liu, L., Li, Y., Li, S., Hu, N., He, Y., Pong, R., Lin, D., Lü, L., & Law, M. (2012) · BioMed Research International · doi:10.1155/2012/251364 · Cited by 1,605

Microsatellites, from molecules to populations and back

Jarne, P., & Lagoda, P. (1996) · Trends in Ecology & Evolution · doi:10.1016/0169-5347(96)10049-5 · Cited by 1,561

Development and Mapping of 2240 New SSR Markers for Rice (Oryza sativa L.)

McCouch, S. R. (2002) · DNA Research · doi:10.1093/dnares/9.6.199 · Cited by 1,531

Informativeness of human (dC-dA)n · (dG-dT)n polymorphisms

Weber, J. L. (1990) · Genomics · doi:10.1016/0888-7543(90)90195-z · Cited by 1,356

Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes

Morgante, M., Hanafey, M. K., & Powell, W. (2002) · Nature Genetics · doi:10.1038/ng822 · Cited by 1,164

Genetic Structure and Diversity in Oryza sativa L.

Garris, A. J., Tai, T. H., Coburn, J., Kresovich, S., & McCouch, S. (2005) · Genetics · doi:10.1534/genetics.104.035642 · Cited by 1,137

The Genetic Architecture of Quantitative Traits

Mackay, T. F. C. (2001) · Annual Review of Genetics · doi:10.1146/annurev.genet.35.102401.090633 · Cited by 1,106

Microsatellite markers: an overview of the recent progress in plants

Kalia, R. K., Manoj, K., Kalia, S., Singh, R., & Dhawan, A. K. (2010) · Euphytica · doi:10.1007/s10681-010-0286-9 · Cited by 1,039

PCR-amplified microsatellites as markers in plant genetics

Morgante, M., & Olivieri, A. M. (1993) · The Plant Journal · doi:10.1046/j.1365-313x.1993.t01-9-00999.x · Cited by 1,022

Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.)

Temnykh, S. V., Park, W. D., Ayres, N. M., Cartinhour, S., Hauck, N. R., Lipovich, L., Cho, Y. G., Ishii, T., & McCouch, S. R. (2000) · Theoretical and Applied Genetics · doi:10.1007/s001220051342 · Cited by 902

The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat

Gupta, P. K., & Varshney, R. K. (2000) · Euphytica · doi:10.1023/a:1003910819967 · Cited by 884

Abundance, variability and chromosomal location of microsatellites in wheat

Röder, M. S., Plaschke, J., König, S., Börner, A., Sorrells, M. E., Tanksley, S. D., & Ganal, M. W. (1995) · Molecular and General Genetics MGG · doi:10.1007/bf00288605 · Cited by 703

THE ASSOCIATION OF SIZE DIFFERENCES WITH SEED-COAT PATTERN AND PIGMENTATION IN PHASEOLUS VULGARIS

Sax, K. (1923) · Genetics · doi:10.1093/genetics/8.6.552 · Cited by 677

The Broad-Spectrum Blast Resistance Gene Pi9 Encodes a Nucleotide-Binding Site–Leucine-Rich Repeat Protein and Is a Member of a Multigene Family in Rice

Qu, S., Liu, G., Zhou, B., Bellizzi, M. D. R., Zeng, L., Dai, L., Han, B., & Wang, G. (2005) · Genetics · doi:10.1534/genetics.105.044891 · Cited by 628

A Single Amino Acid Difference Distinguishes Resistant and Susceptible Alleles of the Rice Blast Resistance Gene Pi-ta

Bryan, G. T., Wu, K., Farrall, L., Jia, Y., Hershey, H. P., McAdams, S. A., Faulk, K. N., Donaldson, G. K., Tarchini, R., & Valent, B. S. (2000) · The Plant Cell · doi:10.1105/tpc.12.11.2033 · Cited by 620

Abundance, polymorphism and genetic mapping of microsatellites in rice

Wu, K., & Tanksley, S. D. (1993) · Molecular and General Genetics MGG · doi:10.1007/bf00280220 · Cited by 612

Molecular markers and their applications in wheat breeding

Gupta, P. K., Varshney, R. K., Sharma, P. C., & Ramesh, B. (1999) · Plant Breeding · doi:10.1046/j.1439-0523.1999.00401.x · Cited by 591

Bioinformatics Methods and Protocols

Misener, S., & Krawetz, S. A. (1999) · Humana Press eBooks · doi:10.1385/1592591922 · Cited by 577

A B‐lectin receptor kinase gene conferring rice blast resistance

Chen, X., Shang, J., Chen, D., Lei, C., Zou, Y., Zhai, W., Liu, G., Xu, J., ZhongZhuan, L., Cao, G., et al. (2006) · The Plant Journal · doi:10.1111/j.1365-313x.2006.02739.x · Cited by 575

The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine‐rich repeat class of plant disease resistance genes

Wang, Z., Yano, M., Yamanouchi, U., Iwamoto, M., Monna, L., Hayasaka, H., Katayose, Y., & Sasaki, T. (1999) · The Plant Journal · doi:10.1046/j.1365-313x.1999.00498.x · Cited by 569

The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates

Lagercrantz, U., Ellegren, H., & Andersson, L. (1993) · Nucleic Acids Research · doi:10.1093/nar/21.5.1111 · Cited by 559

Parameters of the human genome.

Morton, N. E. (1991) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.88.17.7474 · Cited by 519

Survey of plant short tandem DNA repeats

Wang, Z., Weber, J. L., Zhong, G., & Tanksley, S. D. (1994) · Theoretical and Applied Genetics · doi:10.1007/bf00222386 · Cited by 512

An overview of molecular marker methods for plants

Semagn, K., Bjørnstad, Å., & Ndjiondjop, M. (2006) · AFRICAN JOURNAL OF BIOTECHNOLOGY · doi:10.5897/ajb2006.000-5110 · Cited by 489

Microsatellite marker development, mapping and applications in rice genetics and breeding

McCouch, S. R., Chen, X., Panaud, O., Temnykh, S. V., Xu, Y., Cho, Y. G., Huang, N., Ishii, T., & Blair, M. W. (1997) · Springer eBooks · doi:10.1007/978-94-011-5794-0_9 · Cited by 482

Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice

Hittalmani, S., Parco, A. P., Mew, T., Zeigler, R. S., & Huang, N. (2000) · Theoretical and Applied Genetics · doi:10.1007/s001220051395 · Cited by 480

Microsatellites for linkage analysis of genetic traits

Hearne, C. M., Ghosh, S., & Todd, J. A. (1992) · Trends in Genetics · doi:10.1016/0168-9525(92)90256-4 · Cited by 469

The Eight Amino-Acid Differences Within Three Leucine-Rich Repeats Between Pi2 and Piz-t Resistance Proteins Determine the Resistance Specificity to Magnaporthe grisea

Zhou, B., Qu, S., Liu, G., Dolan, M., Sakai, H., Lu, G., Bellizzi, M. D. R., & Wang, G. (2006) · Molecular Plant-Microbe Interactions · doi:10.1094/mpmi-19-1216 · Cited by 443

Genome-Wide Patterns of Nucleotide Polymorphism in Domesticated Rice

Caicedo, A. L., Williamson, S., Hernandez, R. D., Boyko, A. R., Fledel-Alon, A., York, A., Polato, N. R., Olsen, K. M., Nielsen, R., McCouch, S. R., et al. (2007) · PLoS Genetics · doi:10.1371/journal.pgen.0030163 · Cited by 442

Contributions of PCR-Based Methods to Plant Systematics and Evolutionary Biology

Wolfe, A. D., & Liston, A. (1998) · Springer eBooks · doi:10.1007/978-1-4615-5419-6_2 · Cited by 416

Molecular markers in plant breeding

Tanksley, S. D. (1983) · Plant Molecular Biology Reporter · doi:10.1007/bf02680255 · Cited by 386

Genetic Markers, Map Construction, and Their Application in Plant Breeding

Staub, J. E., Serquén, F. C., & Gupta, M. (1996) · HortScience · doi:10.21273/hortsci.31.5.729 · Cited by 379

Fast, Cost-Effective Development of Species-Specific Microsatellite Markers by Genomic Sequencing

Abdelkrim, J., Robertson, B. C., Stanton, J. L., & Gemmell, N. J. (2009) · BioTechniques · doi:10.2144/000113084 · Cited by 376

The Extent of Linkage Disequilibrium in Rice ( Oryza sativa L.)

Mather, K. A., Caicedo, A. L., Polato, N. R., Olsen, K. M., McCouch, S. R., & Purugganan, M. D. (2007) · Genetics · doi:10.1534/genetics.107.079616 · Cited by 354

Blast resistance in rice: a review of conventional breeding to molecular approaches

Miah, G., Rafii, M. Y., Ismail, M. R., Puteh, A. B., Rahim, H. A., Asfaliza, R., & Latif, A. (2012) · Molecular Biology Reports · doi:10.1007/s11033-012-2318-0 · Cited by 344

How much effort is required to isolate nuclear microsatellites from plants?

Squirrell, J., Hollingsworth, P. M., Woodhead, M., Russell, J., Lowe, A. J., Gibby, M., & Powell, W. (2003) · Molecular Ecology · doi:10.1046/j.1365-294x.2003.01825.x · Cited by 330

Microsatellite marker development, mapping and applications in rice genetics and breeding

McCouch, S. R., Chen, X., Panaud, O., Temnykh, S. V., Xu, Y., Cho, Y. G., Huang, N., Ishii, T., & Blair, M. W. (1997) · Plant Molecular Biology · doi:10.1023/a:1005711431474 · Cited by 327

Molecular tools in plant genetic resources conservation: a guide to the technologies.

Karp, A., Kresovich, S., Bhat, K. V., Ayad, W. G., & Hodgkin, T. (1997) · Rothamsted Repository (Rothamsted Repository) · Cited by 324

Potential of Molecular Markers in Plant Biotechnology

Kumar, P. R., Gupta, V., Misra, A., Modi, & Pandey, B. (2009) · Plant Omics · Cited by 321

Development of PCR-based SNP markers for rice blast resistance genes at the Piz locus

Hayashi, K., Hashimoto, N., Daigen, M., & Ashikawa, I. (2004) · Theoretical and Applied Genetics · doi:10.1007/s00122-003-1553-0 · Cited by 319

Association mapping of yield and its components in rice cultivars

Agrama, H. A., Eizenga, G. C., & Yan, W. (2007) · Molecular Breeding · doi:10.1007/s11032-006-9066-6 · Cited by 318

Molecular Markers and Their Use in Marker‐Assisted Selection in Rice

Jena, K. K., & Mackill, D. J. (2008) · Crop Science · doi:10.2135/cropsci2008.02.0082 · Cited by 315

Evaluation of Genetic Diversity in Rice Subspecies Using Microsatellite Markers

Ni, J., Colowit, P. M., & Mackill, D. J. (2002) · Crop Science · doi:10.2135/cropsci2002.6010 · Cited by 315

Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]

Dutta, S., Kumawat, G., Singh, B. P., Gupta, D. K., Singh, S., Dogra, V., Gaikwad, K., Sharma, T. R., Raje, R. S., Bandhopadhya, T. K., et al. (2011) · BMC Plant Biology · doi:10.1186/1471-2229-11-17 · Cited by 271

Microsatellites: genetic markers for the future

WRIGHT, J. M., & Bentzen, P. (1994) · Reviews in Fish Biology and Fisheries · doi:10.1007/bf00042912 · Cited by 264

Two broad-spectrum blast resistance genes, Pi9(t) and Pi2(t), are physically linked on rice chromosome 6

Liu, G., Lu, G., Zeng, L., & Wang, G. (2002) · Molecular Genetics and Genomics · doi:10.1007/s00438-002-0677-2 · Cited by 260

Molecular Systematics of Plants II

Soltis, D. E., Soltis, P. S., & Doyle, J. J. (1998) · Springer eBooks · doi:10.1007/978-1-4615-5419-6 · Cited by 239

High-resolution mapping, cloning and molecular characterization of the Pi-k h gene of rice, which confers resistance to Magnaporthe grisea

Sharma, T. R., Madhav, M. S., Singh, B., Shanker, P., Jana, T. K., Dalal, V., Pandit, A., Singh, A., Gaikwad, K., Upreti, H. C., et al. (2005) · Molecular Genetics and Genomics · doi:10.1007/s00438-005-0035-2 · Cited by 237

The Blast Resistance Gene Pi37 Encodes a Nucleotide Binding Site–Leucine-Rich Repeat Protein and Is a Member of a Resistance Gene Cluster on Rice Chromosome 1

Lin, F., Chen, S., Que, Z., Wang, L., Liu, X., & Pan, Q. (2007) · Genetics · doi:10.1534/genetics.107.080648 · Cited by 236

DNA-based markers in plants

Phillips, R. L., & Vasil, I. K. (1994) · Advances in cellular and molecular biology of plants · doi:10.1007/978-94-011-1104-1 · Cited by 233

Automated sizing of fluorescent-labeled simple sequence repeat (SSR) markers to assay genetic variation in soybean

Diwan, N., & Cregan, P. B. (1997) · Theoretical and Applied Genetics · doi:10.1007/s001220050618 · Cited by 230

Gramene: a resource for comparative grass genomics

Ware, D. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.103 · Cited by 227

Microsatellite Discovery by Deep Sequencing of Enriched Genomic Libraries

Santana, Q. C., Coetzee, M. P. A., Steenkamp, E. T., Mlonyeni, O., Hammond, G. N. A., Wingfield, M. J., & Wingfield, B. D. (2009) · BioTechniques · doi:10.2144/000113085 · Cited by 226

Microsatellite DNA markers for rice chromosomes

Akagi, H., Yokozeki, Y., Inagaki, A., & Fujimura, T. (1996) · Theoretical and Applied Genetics · doi:10.1007/bf00230127 · Cited by 225

Tagging genes for blast resistance in rice via linkage to RFLP markers

Yu, Z., Mackill, D. J., Bonman, J. M., & Tanksley, S. D. (1991) · Theoretical and Applied Genetics · doi:10.1007/bf00219436 · Cited by 220

Genetic diversity and population structure of a diverse set of rice germplasm for association mapping

Jin, L., Lu, Y., Xiao, P., Sun, M., Corke, H., & Bao, J. (2010) · Theoretical and Applied Genetics · doi:10.1007/s00122-010-1324-7 · Cited by 219

Development of PCR-based allele-specific and InDel marker sets for nine rice blast resistance genes

Hayashi, K., Yoshida, H., & Ashikawa, I. (2006) · Theoretical and Applied Genetics · doi:10.1007/s00122-006-0290-6 · Cited by 218

Molecular Techniques in Crop Improvement

Jain, S. M., & Brar, D. S. (2009) · Springer eBooks · doi:10.1007/978-90-481-2967-6 · Cited by 211

Identification of five new blast resistance genes in the highly blast-resistant rice variety IR64 using a QTL mapping strategy

Sallaud, C., Lorieux, M., Roumen, E. C., Tharreau, D., Berruyer, R., Svestasrani, P., Garsmeur, O., Ghesquière, A., & Notteghem, J. L. (2003) · Theoretical and Applied Genetics · doi:10.1007/s00122-002-1088-9 · Cited by 201

A novel gene, Pi40(t), linked to the DNA markers derived from NBS-LRR motifs confers broad spectrum of blast resistance in rice

Jeung, J., Kim, B. R., Cho, Y., Han, S. S., Moon, H. P., Lee, Y. T., & Jena, K. K. (2007) · Theoretical and Applied Genetics · doi:10.1007/s00122-007-0642-x · Cited by 201

Development of DNA Markers Suitable for Marker Assisted Selection of Three Pi Genes Conferring Resistance to Multiple Pyricularia grisea Pathotypes

Fjellstrom, R. G., Bormans, C. A., McClung, A. M., Marchetti, M. A., Shank, A. R., & Park, W. D. (2004) · Crop Science · doi:10.2135/cropsci2004.1790 · Cited by 194

Pyricularia Grisea the Correct Name for the Rice Blast Disease Fungus

Rossman, A. Y., Howard, R. J., & Valent, B. S. (1990) · Mycologia · doi:10.1080/00275514.1990.12025916 · Cited by 193

Characterization of trinucleotide SSR motifs in wheat

Song, Q., Fickus, E., & Cregan, P. B. (2002) · Theoretical and Applied Genetics · doi:10.1007/s001220100698 · Cited by 184

Identification and fine mapping of Pi33, the rice resistance gene corresponding to the Magnaporthe grisea avirulence gene ACE1

Berruyer, R., Adreit, H., Milazzo, J., Gaillard, S., Berger, A., Dioh, W., Lebrun, M., & Tharreau, D. (2003) · Theoretical and Applied Genetics · doi:10.1007/s00122-003-1349-2 · Cited by 179

Identification and characterization of microsatellites in Norway spruce (Picea abiesK.)

Pfeiffer, A., Olivieri, A. M., & Morgante, M. (1997) · Genome · doi:10.1139/g97-055 · Cited by 176

Incorporation of blast resistance into “PRR78”, an elite Basmati rice restorer line, through marker assisted backcross breeding

Singh, V. K., Singh, A. K., Singh, S., Ellur, R. K., Choudhary, V., Sarkel, S., Singh, D., Krishnan, S. G., Nagarajan, M., Vinod, K. K., et al. (2012) · Field Crops Research · doi:10.1016/j.fcr.2011.12.003 · Cited by 152

Conversion of AFLP markers to sequence-specific PCR markers in barley and wheat

Shan, X., Blake, T., & Talbert, L. E. (1999) · Theoretical and Applied Genetics · doi:10.1007/s001220051169 · Cited by 143

Towards the Understanding of Complex Traits in Rice: Substantially or Superficially?

Yamamoto, T., Yonemaru, J., & Yano, M. (2009) · DNA Research · doi:10.1093/dnares/dsp006 · Cited by 138

Comparative localization of three classes of cell wall proteins

Ye, Z., Song, Y., Marcus, A., & Varner, J. E. (1991) · The Plant Journal · doi:10.1111/j.1365-313x.1991.00175.x · Cited by 135

Development of Dominant Rice Blast Pi‐ta Resistance Gene Markers

Jia, Y., Wang, Z., & Singh, P. (2002) · Crop Science · doi:10.2135/cropsci2002.2145 · Cited by 134

Characteristics and a comparison of three classes of microsatellite-based markers and their application in plants.

Rakoczy‐Trojanowska, M., & Bolibok-Brągoszewska, H. (2004) · PubMed · Cited by 133

Identification and characterization of microsatellites in eggplant

Nunome, T., Suwabe, K., Iketani, H., Hirai, M., & Wricke, G. (2003) · Plant Breeding · doi:10.1046/j.1439-0523.2003.00816.x · Cited by 130

Rice ESTs with disease-resistance gene- or defense-response gene-like sequences mapped to regions containing major resistance genes or QTLs

Wang, Z., Taramino, G., Yang, D., Liu, G., Tingey, S. V., Miao, G.-H., & Wang, G. (2001) · Molecular Genetics and Genomics · doi:10.1007/s004380000415 · Cited by 114

Rice Molecular Breeding Laboratories in the Genomics Era: Current Status and Future Considerations

Collard, B. C. Y., Cruz, C. V., McNally, K. L., Virk, P. S., & Mackill, D. J. (2008) · International Journal of Plant Genomics · doi:10.1155/2008/524847 · Cited by 111

Large-scale DNA polymorphism study of Oryza sativa and O. rufipogon reveals the origin and divergence of Asian rice

Rakshit, S., Rakshit, A., Matsumura, H., Takahashi, Y., Hasegawa, Y., Ito, A., Ishii, T., Miyashita, N. T., & Terauchi, R. (2007) · Theoretical and Applied Genetics · doi:10.1007/s00122-006-0473-1 · Cited by 105

Construction of an 800-kb contig in the near-centromeric region of the rice blast resistance gene Pi-ta 2 using a highly representative rice BAC library

Nakamura, S., Asakawa, S., Ohmido, N., Fukui, K., Shimizu, N., & Kawasaki, S. (1997) · Molecular and General Genetics MGG · doi:10.1007/s004380050459 · Cited by 104

Genetic and physical mapping of Pi36(t), a novel rice blast resistance gene located on rice chromosome 8

Liu, X., Wang, L., Chen, S., Lin, F., & Pan, Q. (2005) · Molecular Genetics and Genomics · doi:10.1007/s00438-005-0032-5 · Cited by 100

A Genome-wide Microsatellite Polymorphism Database for the Indica and Japonica Rice

Zhang, Z., Deng, Y., Tan, J., Hu, S., Yu, J. M., & Xue, Q. (2007) · DNA Research · doi:10.1093/dnares/dsm005 · Cited by 97

Rice Pi-ta gene Confers Resistance to the Major Pathotypes of the Rice Blast Fungus in the United States

Jia, Y., Wang, Z., Fjellstrom, R. G., Moldenhauer, K. A. K., Azam, M. A., Correll, J. C., Lee, F. N., Xia, Y., & Rutger, J. N. (2004) · Phytopathology · doi:10.1094/phyto.2004.94.3.296 · Cited by 95

SSR Markers Closely Linked to the Pi-z Locus are Useful for Selection of Blast Resistance in a Broad Array of Rice Germplasm

Fjellstrom, R. G., McClung, A. M., & Shank, A. R. (2006) · Molecular Breeding · doi:10.1007/s11032-005-4735-4 · Cited by 92

Frequency of microsatellite sequences in rice (Oryza sativaL.)

Panaud, O., Chen, X., & McCouch, S. R. (1995) · Genome · doi:10.1139/g95-155 · Cited by 92

Molecular diversity and genome-wide linkage disequilibrium patterns in a worldwide collection of Oryza sativa and its wild relatives

Agrama, H. A., & Eizenga, G. C. (2007) · Euphytica · doi:10.1007/s10681-007-9535-y · Cited by 91

Molecular mapping of genes for resistance to rice blast (Pyricularia grisea Sacc.)

Yu, Z., Mackill, D. J., Bonman, J. M., McCouch, S. R., Guiderdoni, E., Notteghem, J. L., & Tanksley, S. D. (1996) · Theoretical and Applied Genetics · doi:10.1007/bf00224086 · Cited by 91

Microsatellite sequences in a conifer,Pinus sylvestris

Kostia, S., Varvio, S., Vakkari, P., & Pulkkinen, P. (1995) · Genome · doi:10.1139/g95-163 · Cited by 82

Pi35(t), a new gene conferring partial resistance to leaf blast in the rice cultivar Hokkai 188

Nguyen, T. T. T., Koizumi, S., La, T. N., Zenbayashi, K. S., Ashizawa, T., Yasuda, N., Imazaki, I., & Miyasaka, A. (2006) · Theoretical and Applied Genetics · doi:10.1007/s00122-006-0337-8 · Cited by 82

ThePi40Gene for Durable Resistance to Rice Blast and Molecular Analysis ofPi40-Advanced Backcross Breeding Lines

Suh, J. P., Roh, J. H., Cho, Y., Han, S. S., Kim, Y. G., & Jena, K. K. (2009) · Phytopathology · doi:10.1094/phyto-99-3-0243 · Cited by 81

Microsatellite Markers in Plants and Insects. Part I: Applications of Biotechnology

Wang, M. L., Barkley, N. A., & Jenkins, T. M. (2009) · Cited by 81

Molecular Breeding for Rainfed Lowland Rice in the Mekong Region

Toojinda, T., Tragoonrung, S., Vanavichit, A., Siangliw, J. L., Pa-In, N., Jantaboon, J., Siangliw, M., & Fukai, S. (2005) · Plant Production Science · doi:10.1626/pps.8.330 · Cited by 76

Association between molecular markers and blast resistance in an advanced backcross population of rice

Wu, J., Sinha, P. K., Variar, M., Zheng, K.-L., Leach, J. E., Courtois, B., & Leung, H. (2003) · Theoretical and Applied Genetics · doi:10.1007/s00122-003-1528-1 · Cited by 73

SNPs in stress-responsive rice genes: validation, genotyping, functional relevance and population structure

Parida, S. K., Mukerji, M., SINGH, A. K., Singh, N. K., & Mohapatra, T. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-426 · Cited by 72

Identification of SSR markers for a broad-spectrum blast resistance gene Pi20(t) for marker-assisted breeding

Li, W., Lei, C., Cheng, Z., Jia, Y., Huang, D., Wang, J., Wang, J., Zhang, X., Su, N., Guo, X., et al. (2008) · Molecular Breeding · doi:10.1007/s11032-008-9163-9 · Cited by 71

Identification of Two Blast Resistance Genes in a Rice Variety, Digu

Chen, X. W., Li, S. G., Xu, J., Zhai, W. X., Ling, Z. Z., Ma, B. T., Wang, Y. P., Wang, W. M., Cao, G., Q., Y., et al. (2004) · Journal of Phytopathology · doi:10.1046/j.1439-0434.2003.00803.x · Cited by 70

Fine Mapping of the Blast Resistance Gene Pi15, Linked to Pii,

Pan, Q., Zhendi, H., Tanisaka, T., & Wang, L. (2003) · TSpace (University of Toronto) · Cited by 70

Genetic and physical mapping of Pi37(t), a new gene conferring resistance to rice blast in the famous cultivar St. No. 1

Chen, S., Wang, L., Que, Z., Pan, R., & Pan, Q. (2005) · Theoretical and Applied Genetics · doi:10.1007/s00122-005-0086-0 · Cited by 69

Identification and fine mapping of Pi39(t), a major gene conferring the broad-spectrum resistance to Magnaporthe oryzae

Liu, X., Yang, Q., Lin, F., Hua, L., Wang, C., Wang, L., & Pan, Q. (2007) · Molecular Genetics and Genomics · doi:10.1007/s00438-007-0258-5 · Cited by 68

Rapid survey for presence of a blast resistance gene Pi‐ta in rice cultivars using the dominant DNA markers derived from portions of the Pi‐ta gene

Wang, Z., Jia, Y., Rutger, J. N., & Xia, Y. (2007) · Plant Breeding · doi:10.1111/j.1439-0523.2007.01304.x · Cited by 67

DNA-Based Markers in Plants

(2001) · Advances in cellular and molecular biology of plants · doi:10.1007/978-94-015-9815-6 · Cited by 67

Genic non-coding microsatellites in the rice genome: characterization, marker design and use in assessing genetic and evolutionary relationships among domesticated groups

Parida, S. K., Dalal, V., SINGH, A. K., Singh, N. K., & Mohapatra, T. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-140 · Cited by 66

Potential of SSR markers for plant breeding and variety identification in Australian barley germplasm

Karakousis, A., Barr, A. R., Chalmers, K. J., Ablett, G. A., Holton, T. A., Henry, R. J., Lim, P., & Langridge, P. (2003) · Australian Journal of Agricultural Research · doi:10.1071/ar02178 · Cited by 65

Identification and Characterization of a New Blast Resistance Gene Located on Rice Chromosome 1 Through Linkage and Differential Analyses

Zhu, M., Wang, L., & Pan, Q. (2004) · Phytopathology · doi:10.1094/phyto.2004.94.5.515 · Cited by 65

Identification of microsatellite markers linked to the blast resistance gene Pi-1(t) in rice

Fuentes, J. L., Correa-Victoria, F. J., Escobar, F., Prado, G., Aricapa, G., Duque, M. C., & Tohme, J. M. (2007) · Euphytica · doi:10.1007/s10681-007-9497-0 · Cited by 63

RAPD and Pathotype Analyses of Magnaporthe grisea Populations from the north‐western Himalayan Region of India

Sharma, T. R., Chauhan, R. S., Singh, B. M., Paul, R., Sagar, V. R., & Rathour, R. (2002) · Journal of Phytopathology · doi:10.1046/j.1439-0434.2002.00812.x · Cited by 62

Molecular Techniques in Crop Improvement

(2002) · Springer eBooks · doi:10.1007/978-94-017-2356-5 · Cited by 59

Characterization and genetic mapping of a short, highly repeated, interspersed DNA sequence from rice (Oryza sativa L.)

Zhao, X., & Kochert, G. D. (1992) · Molecular and General Genetics MGG · doi:10.1007/bf00292702 · Cited by 56

Fine mapping of qSTV11 KAS , a major QTL for rice stripe disease resistance

Zhang, Y., Wang, Q., Jiang, L., Liu, L., Wang, B., Shen, Y., Cheng, X., & Wan, J.-M. (2011) · Theoretical and Applied Genetics · doi:10.1007/s00122-011-1557-0 · Cited by 55

Development of pyramided lines with two resistance genes, Pish and Pib, for blast disease (Magnaporthe oryzae B. Couch) in rice (Oryza sativa L.)

Koide, Y., Kawasaki, A., Telebanco‐Yanoria, M. J., Hairmansis, A., Nguyet, N. T. M., Bigirimana, J., Fujita, D., Kobayashi, N., & Fukuta, Y. (2010) · Plant Breeding · doi:10.1111/j.1439-0523.2010.01781.x · Cited by 53

Molecular markers linked to the blast resistance gene Pi-z in rice for use in marker-assisted selection

Bormans, C. A., Marchetti, M. A., Johnson, C. W., McClung, A. M., & Park, W. D. (2003) · Theoretical and Applied Genetics · doi:10.1007/s00122-003-1338-5 · Cited by 53

Analysis of simple sequence repeat markers linked with blast disease resistance genes in a segregating population of rice (Oryza sativa)

Ashkani, S., Rafii, M. Y., Sariah, M., Akmar, A. S. N., Rusli, I., Rahim, H. A., & Latif, A. (2011) · Genetics and Molecular Research · doi:10.4238/vol10-3gmr1331 · Cited by 53

Marker‐assisted breeding of Pi‐1 and Piz‐5 genes imparting resistance to rice blast in PRR 78, restorer line of P usa RH ‐10 B asmati rice hybrid

Gouda, P. K., Saikumar, S., Varma, C. M. K., Kancharla, N., Thippeswamy, S., Shenoy, V., Ramesha, M. S., & Shashidhar, H. E. (2012) · Plant Breeding · doi:10.1111/pbr.12017 · Cited by 50

SSR heterogenic patterns of parents for marking and predicting heterosis in rice breeding

Liu, X. C., & Wu, J. L. (1998) · Molecular Breeding · doi:10.1023/a:1009645908957 · Cited by 48

Identification of a major blast resistance gene in the rice cultivar ‘Tetep’

Barman, S. R., Gowda, M., Venu, R. C., & Chattoo, B. B. (2004) · Plant Breeding · doi:10.1111/j.1439-0523.2004.00982.x · Cited by 48

Genetic improvement of resistance to blast and bacterial blight of the elite maintainer line Rongfeng B in hybrid rice (Oryza sativa L.) by using marker-assisted selection

Fu, C. (2012) · AFRICAN JOURNAL OF BIOTECHNOLOGY · doi:10.5897/ajb12.1465 · Cited by 47

Molecular mapping of a novel blast resistance gene Pi38 in rice using SSLP and AFLP markers

Gowda, M., Roy-Barman, S., & Chattoo, B. B. (2006) · Plant Breeding · doi:10.1111/j.1439-0523.2006.01248.x · Cited by 46

When technology meets conservation: increased microsatellite marker production using 454 genome sequencing on the endangered Okaloosa Darter (Etheostoma okaloosae).

Saarinen, E. V., & Austin, J. (2010) · Journal of Heredity · doi:10.1093/jhered/esq080 · Cited by 46

Molecular mapping of a new gene for resistance to rice blast (Pyricularia grisea Sacc.)

Ahn, S.-N., Kim, Y.-K., Hong, H.-C., Han, S.-S., Kwon, S.-J., Choi, H.-C., Moon, H. P., & McCouch, S. R. (2000) · Euphytica · doi:10.1023/a:1004045812357 · Cited by 45

Identification and mapping of Pi41, a major gene conferring resistance to rice blast in the Oryza sativa subsp. indica reference cultivar, 93-11

Yang, Q., Lin, F., Wang, L., & Pan, Q. (2009) · Theoretical and Applied Genetics · doi:10.1007/s00122-008-0959-0 · Cited by 45

Molecular mapping and marker-assisted selection for major-gene traits in rice

Mackill, D. J., & Ni, J. (2008) · WORLD SCIENTIFIC eBooks · doi:10.1142/9789812814296_0009 · Cited by 45

Improvement of Resistance to Rice Blast in Zhenshan 97 by Molecular Marker-aided Selection

Liu, S., Li, X., Wang, C., et al. (2003) · Journal of Integrative Plant Biology · Cited by 42

Improvement of Resistance to Rice Blast in Zhenshan 97 by Molecular Marker-aided Selection

Shi, L., Li, X., Wang, C., Li, X., & Yu-qing, H. (2003) · Journal of Integrative Plant Biology · Cited by 42

Mapping of a blast field resistance gene Pi39(t) of elite rice strain Chubu 111

Terashima, T., Fukuoka, S., Saka, N., & Kudo, S. (2008) · Plant Breeding · doi:10.1111/j.1439-0523.2007.01451.x · Cited by 40

Development and evaluation of a high-throughput, low-cost genotyping platform based on oligonucleotide microarrays in rice

Edwards, J. D., Janda, J., Sweeney, M. T., Gaikwad, A. B., Liu, B., Leung, H., & Galbraith, D. W. (2008) · Plant Methods · doi:10.1186/1746-4811-4-13 · Cited by 39

Molecular markers to study genetic drift and selection in wheat populations

Enjalbert, J., Goldringer, I., Paillard, S., & Brabant, P. (1999) · Journal of Experimental Botany · doi:10.1093/jxb/50.332.283 · Cited by 39

Distinct evolutionary patterns ofOryza glaberrimadeciphered by genome sequencing and comparative analysis

Sakai, H., Ikawa, H., Tanaka, T., Numa, H., Minami, H., Fujisawa, M., Shibata, M., Kurita, K., Kikuta, A., Hamada, M., et al. (2011) · The Plant Journal · doi:10.1111/j.1365-313x.2011.04539.x · Cited by 37

Genetic dissection of rice blast resistance by QTL mapping approach using an F3 population

Ashkani, S., Rafii, M. Y., Rahim, H. A., & Latif, A. (2012) · Molecular Biology Reports · doi:10.1007/s11033-012-2331-3 · Cited by 36

Divergence and allelomorphic relationship of a soybean virus resistance gene based on tightly linked DNA microsatellite and RFLP markers

Yu, Y., Maroof, M. A. S., & Buss, G. R. (1996) · Theoretical and Applied Genetics · doi:10.1007/bf00222952 · Cited by 36

Cereal Genomics: An Overview

Gupta, P. K., & Varshney, R. K. (2006) · Kluwer Academic Publishers eBooks · doi:10.1007/1-4020-2359-6_1 · Cited by 33

A PCR‐based DNA marker for detection of mutant and normal alleles of the Wx‐D1 gene of wheat

Shariflou, M. R., Hassani, M. E., & Sharp, P. J. (2001) · Plant Breeding · doi:10.1046/j.1439-0523.2001.00577.x · Cited by 33

Saturation mapping with subclones of YACs: DNA marker production targeting the rice blast disease resistance gene, Pi-b

Monna, L., Miyao, A., Zhong, H., Yano, M., Iwamoto, M., Umehara, Y., Kurata, N., Hayasaka, H., & Sasaki, T. (1997) · Theoretical and Applied Genetics · doi:10.1007/s001220050396 · Cited by 32

Transferability of microsatellite and sequence tagged site markers in Oryza species

Brondani, C., Rangel, P. H. N., Borba, T. C. O., & Vianello, R. P. (2003) · Hereditas · doi:10.1034/j.1601-5223.2003.01656.x · Cited by 29

Identification of a 118-kb DNA fragment containing the locus of blast resistance gene Pi-2(t) in rice

Jiang, J., & Wang, S. (2002) · Molecular Genetics and Genomics · doi:10.1007/s00438-002-0742-x · Cited by 28

Genetic fingerprinting: Advancing the frontiers of crop biology research

Romero, G. O., Adeva, C. C., & Battad, Z. M. (2009) · SciEnggJ · doi:10.54645/cucm16245 · Cited by 24

Advances of molecular markers application in plant pathology research.

Benali, S., Mohamed, B. R., Henni, J. E., & Neema, C. (2011) · Cited by 24

Molecular Markers in Plant Breeding-II. Some Pre-requisites for Use

Farooq, S., & Azam, F. (2002) · Pakistan Journal of Biological Sciences · doi:10.3923/pjbs.2002.1141.1147 · Cited by 22

Potential of (GATA)n microsatellites from rice for inter- and intra-specific variability studies

Davierwala, A. P., Ramakrishna, W., Chowdari, V., Ranjekar, P. K., & Gupta, V. S. (2001) · BMC Evolutionary Biology · doi:10.1186/1471-2148-1-7 · Cited by 21

Application of Molecular Markers for Breeding Disease Resistant Varieties in Crop Plants

Torres, A. M. (2009) · Springer eBooks · doi:10.1007/978-90-481-2967-6_8 · Cited by 19

HighSSR: high-throughput SSR characterization and locus development from next-gen sequencing data

Churbanov, A., Ryan, R., Hasan, N. A., Bailey, D., Chen, H., Milligan, B. G., & Houde, P. (2012) · Bioinformatics · doi:10.1093/bioinformatics/bts524 · Cited by 19

Efficient Genetic Mapping of Single Nucleotide Polymorphisms Based Upon DNA Mismatch Digestion

Rungis, D. E., Hamberger, B., Bérubé, Y., Wilkin, J., Bohlmann, J., & Ritland, K. (2005) · Molecular Breeding · doi:10.1007/s11032-005-3424-7 · Cited by 19

Development of Monogenic and Digenic Rice Lines for Blast Resistance Genes Pi‐ta, Pi‐kh/Pi‐ks

Jia, Y., & Moldenhauer, K. A. K. (2010) · Journal of Plant Registrations · doi:10.3198/jpr2009.04.0223crmp · Cited by 18

Inheritance of Blast Resistance and Associated Microsatellite Markers in Rice Cultivar ‘Laxmi’

Sharma, R. C., Shrestha, S. M., & Pandey, M. P. (2007) · Journal of Phytopathology · doi:10.1111/j.1439-0434.2007.01298.x · Cited by 18

Applications of biotechnology

Ouellette, R. P., & Cheremisinoff, P. N. (1985) · Cited by 16

Development and validation of microsatellite markers linked to the rice blast resistance gene Pi-z of Fukunishiki and Zenith

Rathour, R., Chopra, M., & Sharma, T. R. (2008) · Euphytica · doi:10.1007/s10681-008-9646-0 · Cited by 16

Identification of Microsatellite (SSR) and RAPD Markers Linked to Rice Blast Disease Resistance gene in Rice (Oryza sativa L.)

Selvaraj, C. I., Nagarajan, P., Thiyagarajan, K., Bharathi, M. J., & Rabindran, R. (2011) · AFRICAN JOURNAL OF BIOTECHNOLOGY · doi:10.5897/ajb10.2573 · Cited by 15

Virulence structure of theMagnaporthe grisea rice population from the northwestern Himalayas

Rathour, R., Singh, B. M., & Plaha, P. (2006) · Phytoparasitica · doi:10.1007/bf02980957 · Cited by 12

Cereal Genomics

Gupta, P. K., & Varshney, R. K. (2005) · Kluwer Academic Publishers eBooks · doi:10.1007/1-4020-2359-6 · Cited by 9

Applications of genomics to rice breeding

Mackill, D. J. (2003) · Zenodo (CERN European Organization for Nuclear Research) · doi:10.5281/zenodo.7005716 · Cited by 8

GENETIC AND MOLECULAR DISSECTION OF BLAST RESISTANCE IN RICE USING RFLP, SIMPLE SEQUENCE REPEATS AND DEFENSE-RELATED CANDIDATE GENE MARKERS

Moumeni, A., & Leung, H. (2003) · Iranian Journal of Biotechnology · Cited by 8

Tagging microsatellite marker to a blast resistance gene in the irrigated rice cultivar Cica-8

Pinheiro, T. M., de Araújo, L. G., da Silva-Lobo, V. L., Prabhu, A. S., & de Filippi, M. C. C. (2012) · Crop Breeding and Applied Biotechnology · doi:10.1590/s1984-70332012000300001 · Cited by 4

Performance of different rice genotypes against blast pathogen through linked molecular markers

Abedi, F., Babaeiyan, N., & Moumeni, A. (2012) · Journal of Crop Science and Biotechnology · doi:10.1007/s12892-011-0098-z · Cited by 4

Identification of Rice Blast Resistance Gene Pi-1 in Some Japonica Rice Varieties with SSR Marker

Xuehui, J. (2006) · Heilongjiang Bayi Nongken Daxue xuebao · Cited by 3

Looking back to move forward - a personal perspective on pig molecular genetics from RFLPs to nextgen sequencing

Moran, C. (2012) · Cited by 2

MISA-web: a web server for microsatellite prediction

Beier, S., Thiel, T., Münch, T., Scholz, U., & Mascher, M. (2017) · Bioinformatics · doi:10.1093/bioinformatics/btx198 · Cited by 2,644

Recent advancements in molecular marker-assisted selection and applications in plant breeding programmes

Hasan, N., Choudhary, S., Naaz, N., Sharma, N., & Laskar, R. A. (2021) · Journal of Genetic Engineering and Biotechnology · doi:10.1186/s43141-021-00231-1 · Cited by 582

The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st century

Hodel, R. G. J., Salcedo, C. S., Landis, J. B., Crowl, A. A., Sun, M., Liu, X., Gitzendanner, M. A., Douglas, N. A., Germain‐Aubrey, C. C., Chen, S., et al. (2016) · Applications in Plant Sciences · doi:10.3732/apps.1600025 · Cited by 211

Genetic Diversity of Aromatic Rice Germplasm Revealed By SSR Markers

Aljumaili, S. J., Rafii, M. Y., Latif, A., Sakimin, S. Z., Arolu, I. W., & Miah, G. (2018) · BioMed Research International · doi:10.1155/2018/7658032 · Cited by 134

Plant Genetic Diversity Studies: Insights from DNA Marker Analyses

Bidyananda, N., Jamir, I., Nowakowska, K., Varte, V., Vendrame, W. A., Devi, R. S., & Nongdam, P. (2024) · International Journal of Plant Biology · doi:10.3390/ijpb15030046 · Cited by 132

Blast resistance in rice: a review of breeding and biotechnology.

Sattari, A., Fakheri, B. A., Hassan, F., & norozi, M. (2014) · International Journal of Agriculture and Crop Sciences (IJACS) · Cited by 7

Molecular Markers and Their Use in Marker‐Assisted Selection in Rice

Jena, K. K., & Mackill, D. J. (2008) · Crop Science · doi:10.2135/cropsci2008.02.0082 · Cited by 315

Marker assisted selection in rice.

Akhtar, S., Bhat, M. A., Wani, S. A., Bhat, K. A., Chalkoo, S., Mir, M. R., & Wani, S. A. (2010) · DOAJ (DOAJ: Directory of Open Access Journals) · Cited by 33

Advances in molecular markers of blast resistance genes and marker-assisted breeding in rice

Wei-we, X., Wang, X., Huang, Y., Jiang, S., Wei, L., & Jianfu, G. (2013) · Jiangsu nongye xuebao · Cited by 3

Genetic analysis of microsatellites associated with resistance against bacterial leaf blight and blast diseases of rice (Oryza sativa L.)

Chukwu, S. C., Rafii, M. Y., Ramlee, S. I., Ismail, S. I., Oladosu, Y. A., Muhammad, I., Ubi, B. E., & Nwokwu, G. N. (2020) · Biotechnology & Biotechnological Equipment · doi:10.1080/13102818.2020.1809520 · Cited by 15