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PseAAC-General: Fast Building Various Modes of General Form of Chou’s Pseudo-Amino Acid Composition for Large-Scale Protein Datasets
Open accessAbstract
The general form pseudo-amino acid composition (PseAAC) has been widely used to represent protein sequences in predicting protein structural and functional attributes. We developed the program PseAAC-General to generate various different modes of Chou’s general PseAAC, such as the gene ontology mode, the functional domain mode, and the sequential evolution mode. This program allows the users to define their own desired modes. In every mode, 544 physicochemical properties of the amino acids are available for choosing. The computing efficiency is at least 100 times that of existing programs, which makes it able to facilitate the extensive studies on proteins and peptides. The PseAAC-General is freely available via SourceForge. It runs on both Linux and Windows.
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Cites
Some remarks on protein attribute prediction and pseudo amino acid composition
Chou, K.-C. (2011) · Journal of Theoretical Biology · doi:10.1016/j.jtbi.2010.12.024 · Cited by 1,225
Cited by
Liu, B., Liu, F., Wang, X., Chen, J., Fang, L., & Chou, K.-C. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv458 · Cited by 721
Lin, H., Deng, E.-Z., Ding, H., Chen, W., & Chou, K.-C. (2014) · Nucleic Acids Research · doi:10.1093/nar/gku1019 · Cited by 508
Chen, Z., Zhao, P., Li, F., Marquez-Lago, T. T., Leier, A., Revote, J., Zhu, Y., Powell, D. R., Akutsu, T., Webb, G. I., et al. (2020) · Briefings in Bioinformatics · doi:10.1093/bib/bbz041 · Cited by 417
Jia, J., Liu, Z., Xiao, X., Liu, B., & Chou, K.-C. (2016) · Journal of Theoretical Biology · doi:10.1016/j.jtbi.2016.01.020 · Cited by 323
Liu, B., Xu, J., Lan, X., Xu, R., Zhou, J., Wang, X., & Chou, K.-C. (2014) · PLoS ONE · doi:10.1371/journal.pone.0106691 · Cited by 306
Metadata
- Authors
- Du, P., Gu, S., & Jiao, Y.
- Venue
- International Journal of Molecular Sciences
- Publisher
- MDPI AG
- Published
- 2014-02-26
- Volume
- 15
- Issue
- 3
- Pages
- 3495-3506
- ISSN
- 1422-0067 (ISSN-L)
- OpenAlex
- W2059971420
- Cited by
- 282
- References
- 1
- FWCI
- 14.60
- Type
- journal article
- Language
- en
- Open access
- gold
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- Du, P., Gu, S., & Jiao, Y. (2014). PseAAC-General: Fast Building Various Modes of General Form of Chou’s Pseudo-Amino Acid Composition for Large-Scale Protein Datasets. International Journal of Molecular Sciences. https://doi.org/10.3390/ijms15033495
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