Multifaceted Applications of Synthetic Microbial Communities: Advances in Biomedicine, Bioremediation, and Industry
Open accessAbstract
The broad range of applications offered by synthetic biology and bioengineering has revolutionized the ability to design and redesign microorganisms to express specific functions, overcoming the limitations of natural biological systems. This advancement has been achieved through the use of mathematical models and genetic circuits, enabling the precise design of synthetic microbial communities. These are defined as artificially created communities through co-cultures of selected species that share similar characteristics and environments. Reprogramming an organism is carried out by inserting synthetic genetic circuits, which are designed in a controlled manner to obtain biotechnological products beneficial to humans, their health, and the environment. The potential applications in medicine, bioremediation, industry, and pharmaceuticals make the research of synthetic microbial communities a promising field for the future. However, the implementation of synthetic microbial communities carries potential risks, such as horizontal gene transfer and possible environmental impacts. It is crucial to carefully evaluate these functions and risks, considering biocontainment and the associated ethical and ecological implications.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Synthetic microbial consortia have been explored to enhance biodegradation, yet their success in real-world applications remains limited by challenges in controlling their behavior outside controlled laboratory settings.
“In addition, synthetic microbial consortia have been explored to enhance biodegradation, yet their success in real-world applications remains limited by challenges in controlling their behavior outside of controlled laboratory settings [74].”
From Harnessing bacterial consortia for effective bioremediation: targeted removal of heavy metals, hydrocarbons, and persistent pollutants (2025) · cites this paper as [74]
Section 5.2 (Bioremediation and Industry; page not available) describes synthetic consortia constructed to degrade oil and reports improved degradation under optimal conditions. Sections 2.1 and 6 discuss controllability under laboratory conditions and risks of implementation, but the paper does not establish that difficulty controlling behavior outside the lab has limited real-world biodegradation success. (LLM, conf=0.84)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
No references could be resolved yet.
Research works printed but not linked: 97
- Callieri, C.; Eckert, E.M.; Di Cesare, A.; Bertoni, F. Microbial Communities. In Encyclopedia of Ecology, 2nd ed.; Fath, B., Ed.; Elsevier: Amsterdam, The Netherlands, 2019; pp. 126-134. [CrossRef] · DOI
- Gautam, S.S.; Gondwal, M.; Soni, R.; Gautam, B.P.S. Potash biofertilizers: Current development, formulation, and applications. In Trends of Applied Microbiology for Sustainable Economy; Academic Press: Cambridge, MA, USA, 2022; pp. 481-500. [CrossRef] · DOI
- Ding, Q.; Diao, W.; Gao, C.; Chen, X.; Liu, L. Microbial cell engineering to improve cellular synthetic capacity. Biotechnol. Adv. 2020, 45, 107649. [CrossRef] [PubMed] · DOI
- Sgobba, E.; Wendisch, V.F. Synthetic microbial consortia for small molecule production. Curr. Opin. Biotechnol. 2020, 62, 72-79. [CrossRef] [PubMed] · DOI
- Ben Said, S.; Or, D. Synthetic Microbial Ecology: Engineering Habitats for Modular Consortia. Front. Microbiol. 2017, 8, 1125. [CrossRef] · DOI
- Jagmann, N.; Philipp, B. Design of synthetic microbial communities for biotechnological production processes. J. Biotechnol. 2014, 184, 209-218. [CrossRef] [PubMed] · DOI
- Johns, N.I.; Blazejewski, T.; Gomes, A.L.; Wang, H.H. Principles for designing synthetic microbial communities. Curr. Opin. Microbiol. 2016, 31, 146-153. [CrossRef] [PubMed] · DOI
- Großkopf, T.; Soyer, O.S. Synthetic microbial communities. Curr. Opin. Microbiol. 2014, 18, 72-77. [CrossRef] [PubMed] · DOI
- Tan, X.; Letendre, J.H.; Collins, J.J.; Wong, W.W. Synthetic biology in the clinic: Engineering vaccines, diagnostics, and therapeutics. Cell 2021, 184, 881-898. [CrossRef] · DOI
- Cermak, N.; Datta, M.S.; Conwill, A. Rapid, Inexpensive Measurement of Synthetic Bacterial Community Composition by Sanger Sequencing of Amplicon Mixtures. iScience 2020, 23, 100915. [CrossRef] · DOI
- Konopka, A. Ecology, microbial. In Encyclopedia of Microbiology; Academic Press: Cambridge, MA, USA, 2009; pp. 91-106. [CrossRef] · DOI
- Bernstein, H.C.; Carlson, R.P. Microbial Consortia Engineering for Cellular Factories: In vitro to in silico systems. Comput. Struct. Biotechnol. J. 2012, 3, e201210017. [CrossRef] · DOI
- Blasche, S.; Kim, Y.; Oliveira, A.P.; Patil, K.R. Model microbial communities for ecosystems biology. Curr. Opin. Syst. Biol. 2017, 6, 51-57. [CrossRef] · DOI
- Zhang, Y.; Yu, J.; Wu, Y.; Li, M.; Zhao, Y.; Zhu, H.; Chen, C.; Wang, M.; Chen, B.; Tan, T. Efficient production of chemicals from microorganism by metabolic engineering and synthetic biology. Chin. J. Chem. Eng. 2021, 30, 14-28. [CrossRef] · DOI
- Aguirre-Cárcer, D. Experimental and computational approaches to unravel microbial community assembly. Comput. Struct. Biotechnol. J. 2020, 18, 4071-4081. [CrossRef] · DOI
- Mccarty, N.S.; Ledesma-Amaro, R. Synthetic Biology Tools to Engineer Microbial Communities for Biotechnology. Trends Biotechnol. 2019, 37, 181-197. [CrossRef] · DOI
- Antoniewicz, M.R. A guide to deciphering microbial interactions and metabolic fluxes in microbiome communities. Curr. Opin. Biotechnol. 2020, 64, 230-237. [CrossRef] · DOI
- Eng, A.; Borenstein, E. Microbial community design: Methods, applications, and opportunities. Curr. Opin. Biotechnol. 2019, 58, 117-128. [CrossRef] · DOI
- Rojas-Badía, M. Quorum sensing in beneficial plant-bacteria associations. Rev. Colomb. Biotecnol. 2011, 13, 135-143.
- Honjo, H.; Iwasaki, K.; Soma, Y.; Tsuruno, K.; Hamada, H.; Hanai, T. Synthetic microbial consortium with specific roles designated by genetic circuits for cooperative chemical production. Metab. Eng. 2019, 55, 268-275. [CrossRef] [PubMed] · DOI
- Bengtsson-Palme, J. Microbial model communities: To understand complexity, harness the power of simplicity. Comput. Struct. Biotechnol. J. 2020, 18, 3987-4001. [CrossRef] [PubMed] · DOI
- Brenner, K.; Karig, D.K.; Weiss, R.; Arnold, F.H. Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium. Proc. Natl. Acad. Sci. USA 2007, 104, 17300-17304. [CrossRef] [PubMed] · DOI
- Zhang, M.; Qiao, C.; Luan, G.; Luo, Q.; Lu, X. Systematic Identification of Target Genes for Cellular Morphology Engineering in Synechococcus elongatus PCC7942. Front. Microbiol. 2020, 11, 1608. [CrossRef] · DOI
- García-Jiménez, B.; Torres-Bacete, J.; Nogales, J. Metabolic modelling approaches for describing and engineering microbial communities. Comput. Struct. Biotechnol. J. 2021, 19, 226-246. [CrossRef] [PubMed] · DOI
- Gallardo-Navarro, O.; Aguilar-Salinas, B.; Rocha, J.; Olmedo-Álvarez, G. Higher-Order Interactions and Emergent Properties of Microbial Communities: The Power of Synthetic Ecology. Heliyon 2024, 10, E33896. [CrossRef] · DOI
- Bruno, J.F.; Stachowicz, J.J.; Bertness, M.D. Inclusion of facilitation into ecological theory. Trends Ecol. Evol. 2003, 18, 119-125. [CrossRef] · DOI
- Zhang, H.; Hu, J.; Peng, X.; Zhou, L.; Zhang, T.; Zhang, Y.; Yin, H.; Meng, D. Impacts of ammoniacal odour removal bioagent on air bacterial community. Adv. Biotechnol. 2024, 2, 8. [CrossRef] · DOI
- Cao, P.; Wei, X.; Wang, G.; Chen, X.; Han, J.; Li, Y. Microbial inoculants and garbage fermentation liquid reduced root-knot nematode disease and As uptake in Panax quinquefolium cultivation by modulating rhizosphere microbiota community. Chin. Herb. Med. 2022, 14, 58-69. [CrossRef] · DOI
- Faust, K.; Raes, J. Microbial interactions: From networks to models. Nat. Rev. Microbiol. 2012, 10, 538-550. [CrossRef] · DOI
- Wang, Y.; Zhang, M.; Dong, L.; Zhang, G.; Bai, X.; Wang, J.; Li, Y.; Hu, S.; Yu, X. Interactions between root and rhizosphere microbes mediate phosphorus acquisition in Pinus tabulaeformis. Ind. Crops Prod. 2024, 215, 118624. [CrossRef] · DOI
- Maqsood, Q.; Sumrin, A.; Waseem, R.; Hussain, M.; Imtiaz, M.; Hussain, N. Bioengineered microbial strains for detoxification of toxic environmental pollutants. Environ. Res. 2023, 227, 115665. [CrossRef] [PubMed] · DOI
- Requena, T.; Velasco, M. Microbioma humano en la salud y la enfermedad. Rev. Clín. Esp. 2019, 221, 233-240. [CrossRef] · DOI
- De Lorenzo, V.; Krasnogor, N.; Schmidt, M. For the sake of the Bioeconomy: Define what a Synthetic Biology Chassis is! New Biotechnol. 2021, 60, 44-51. [CrossRef] · DOI
- Bittihn, P.; Din, M.O.; Tsimring, L.S.; Hasty, J. Rational engineering of synthetic microbial systems: From single cells to consortia. Curr. Opin. Microbiol. 2018, 45, 92-99. [CrossRef] [PubMed] · DOI
- Kapoore, R.V.; Padmaperuma, G.; Maneein, S.; Vaidyanathan, S. Co-culturing microbial consortia: Approaches for applications in biomanufacturing and bioprocessing. Crit. Rev. Biotechnol. 2021, 42, 46-72. [CrossRef] [PubMed] · DOI
- Troncoso, C.; Pavez, M.; Santos, A.; Salazar, R.; Barrientos, L. Structural and physiological implications of bacterial cell in antibiotic resistance mechanisms. Int. J. Morphol. 2017, 35, 1214-1223. [CrossRef] · DOI
- Foresto, E.; Bogino, P.C. Quorum sensing: Un lenguaje común entre bacterias y plantas con importancia en la producción agrícola. Rev. Bol. Biol. 2020, 22, 10-55.
- Malla, M.A.; Ansari, F.A.; Bux, F.; Kumari, S. Re-vitalizing wastewater: Nutrient recovery and carbon capture through microbe- algae synergy using omics-biology. Environ. Res. 2024, 259, 119439. [CrossRef] [PubMed] · DOI
- Porter, J.R.; Batchelor, E. Using Computational Modeling and Experimental Synthetic Perturbations to Probe Biological Circuits. In Methods in Molecular Biology; Humana Press: New York, NY, USA, 2014; pp. 259-276. [CrossRef] · DOI
- Zomorrodi, A.R.; Segrè, D. Synthetic ecology of microbes: Mathematical models and applications. J. Mol. Biol. 2016, 428, 837-861. [CrossRef] [PubMed] · DOI
- Hsu, R.H.; Clark, R.L.; Tan, J.W.; Ahn, J.C.; Gupta, S.; Romero, P.A.; Venturelli, O.S. Microbial Interaction Network Inference in Microfluidic Droplets. Cell Syst. 2019, 9, 229-242.e4. [CrossRef] [PubMed] · DOI
- Glass, D.S.; Riedel-Kruse, I.H. A Synthetic Bacterial Cell-Cell Adhesion Toolbox for Programming Multicellular Morphologies and Patterns. Cell 2018, 174, 649-658.e16. [CrossRef] [PubMed] · DOI
- Jin, X.; Riedel-Kruse, I.H. Biofilm lithography enables high-resolution cell patterning via optogenetic adhesin expression. Proc. Natl. Acad. Sci. USA 2018, 115, 3698-3703. [CrossRef] · DOI
- Gardner, T.S.; Cantor, C.R.; Collins, J.J. Construction of a genetic toggle switch in Escherichia coli. Nature 2000, 403, 339-342. [CrossRef] · DOI
- Elowitz, M.B.; Leibler, S. A synthetic oscillatory network of transcriptional regulators. Nature 2000, 403, 335-338. [CrossRef] [PubMed] · DOI
- Miller, M.B.; Bassler, B.L. Quorum sensing in bacteria. Annu. Rev. Microbiol. 2001, 55, 165-199. [CrossRef] [PubMed] · DOI
- He, Y.; Yun, H.; Peng, L.; Ji, J.; Wang, W.; Li, X. Deciphering the potential role of quorum quenching in efficient aerobic denitrification driven by a synthetic microbial community. Water Res. 2024, 251, 121162. [CrossRef] [PubMed] · DOI
- Han, Y.H.; Kim, G.; Seo, S.W. Programable synthetic biology tools for developing microbial cell factories. Curr. Opin. Biotechnol. 2023, 79, 102874. [CrossRef] · DOI
- Selberg, J.; Gomez, M.; Rolandi, M. The potential for convergence between synthetic biology and bioelectronics. Cell Syst. 2018, 7, 231-244. [CrossRef] [PubMed] · DOI
- Didovyk, A.; Borek, B.; Hasty, J.; Tsimring, L. Orthogonal Modular Gene Repression in Escherichia coli Using Engineered CRISPR/Cas9. ACS Synth. Biol. 2016, 5, 81-88. [CrossRef] [PubMed] · DOI
- Barreto, A.C. Quorum Sensing: Sistemas de comunicación bacteriana. Cienc. Actual 2011, 2, 43-50.
- Zhang, L.; Zou, W.; Ni, M.; Hu, Q.; Zhao, L.; Liao, X.; Huang, Q.; Zhou, R. Development and application of two inducible expression systems for Streptococcus suis. Microbiol. Spectrum. 2022, 10, e0036322. [CrossRef] · DOI
- Charubin, K.; Bennett, R.K.; Fast, A.G.; Papoutsakis, E.T. Engineering Clostridium organisms as microbial cell-factories: Chal- lenges & opportunities. Metab. Eng. 2018, 50, 173-191. [CrossRef] · DOI
- Jeong, S.H.; Lee, H.J.; Lee, S.J. Recent advances in CRISPR-Cas technologies for synthetic biology. J. Microbiol. 2023, 61, 13-36. [CrossRef] · DOI
- Hutinet, G.; Kot, W.; Cui, L.; Hillebrand, R.; Balamkundu, S.; Gnanakalai, S.; Neelakandan, R.; Carstens, A.B.; Lui, C.F.; Tremblay, D.; et al. 7-Deazaguanine modifications protect phage DNA from host restriction systems. Nat. Commun. 2019, 10, 5442. [CrossRef] · DOI
- Mojica, F.J.M.; Juez, G.; Rodriguez-Valera, F. Transcription at different salinities of Haloferax mediterranei sequences adjacent to partially modified PstI sites. Mol. Microbiol. 1993, 9, 613-621. [CrossRef] [PubMed] · DOI
- Lammoglia-Cobo, M.F.; Lozano-Reyes, R.; García-Sandoval, C.D.; Avilez-Bahena, C.M.; Trejo-Reveles, V.; Muñoz-Soto, R.B.; López- Camacho, C. La revolución en ingeniería genética: Sistema CRISPR/Cas. Investig. Discapacidad. 2016, 5, 116-128. ISSN 2992-779X.
- Doudna, J.A.; Charpentier, E. The new frontier of genome engineering with CRISPR-Cas9. Science 2014, 346, 1258096. [CrossRef] · DOI · Paper page
- Rubin, B.E.; Diamond, S.; Cress, B.F.; Crits-Christoph, A.; Lou, Y.C.; Borges, A.L.; Shivram, H.; He, C.; Xu, M.; Zhou, Z.; et al. Species-and site-specific genome editing in complex bacterial communities. Nat. Microbiol. 2021, 7, 34-47. [CrossRef] [PubMed] · DOI
- Stephens, K.; Bentley, W.E. Synthetic Biology for Manipulating Quorum Sensing in Microbial Consortia. Trends Microbiol. 2020, 28, 633-643. [CrossRef] · DOI
- Nealson, K.H.; Hastings, J.W. Bacterial bioluminescence: Its control and ecological significance. Microbiol. Rev. 1979, 43, 496-518. [CrossRef] [PubMed] · DOI
- Sarkar, K.; Sil, P.C. Effect of diet, pharmaceuticals, and environmental toxicants on gut microbiota imbalance and increased intestinal membrane permeability. In Toxicological Risk Assessment and Multi-System Health Impacts from Exposure; Tsatsakis, A.M., Ed.; Academic Press: Cambridge, MA, USA, 2021; pp. 403-413. [CrossRef] · DOI
- Thursby, E.; Juge, N. Introduction to the human gut microbiota. Biochem. J. 2017, 474, 1823-1836. [CrossRef] · DOI · Paper page
- Afzaal, M.; Saeed, F.; Shah, Y.A.; Hussain, M.; Rabail, R.; Socol, C.T.; Hassoun, A.; Pateiro, M.; Lorenzo, J.M.; Rusu, A.V.; et al. Human gut microbiota in health and disease: Unveiling the relationship. Front. Microbiol. 2022, 26, 999001. [CrossRef] · DOI · Paper page
- Zhang, J.S.; Chu, C.H.; Yu, O.Y. Oral Microbiome and Dental Caries Development. Dent. J. 2022, 10, 184. [CrossRef] · DOI
- Van Leeuwen, P.T.; Brul, S.; Zhang, J.; Wortel, M.T. Synthetic microbial communities (SynComs) of the human gut: Design, assembly, and applications. FEMS Microbiol. Rev. 2023, 47, fuad012. [CrossRef] [PubMed] · DOI
- Donkers, J.M.; van der Vaart, J.I.; van de Steeg, E. Gut-on-a-chip research for drug development: Implications of chip design on preclinical oral bioavailability or intestinal disease studies. Biomimetics 2023, 8, 226. [CrossRef] [PubMed] · DOI
- Liu, J.; Zhu, W.; Lessing, D.J.; Chu, W. Synthetic microbial consortia for the treatment of Clostridioides difficile infection in mice model. Microb. Biotechnol. 2023, 16, 1985-2006. [CrossRef] [PubMed] · DOI
- Gurbatri, C.R.; Lia, I.; Vincent, R.; Coker, C.; Castro, S.; Treuting, P.M.; Hinchliffe, T.E.; Arpaia, N.; Danino, T. Engineered probiotics for local tumor delivery of checkpoint blockade nanobodies. Sci. Transl. Med. 2020, 12, eaax0876. [CrossRef] [PubMed] · DOI · Paper page
- Anderson, J.C.; Clarke, E.J.; Arkin, A.P.; Voigt, C.A. Environmentally controlled invasion of cancer cells by engineered bacteria. J. Mol. Biol. 2006, 355, 619-627. [CrossRef] [PubMed] · DOI
- Patel, V.K.; Sarim, K.M.; Patel, A.K.; Rout, P.K.; Kalra, A. Synthetic microbial ecology and nanotechnology for the production of Taxol and its precursors: A step towards sustainable production of cancer therapeutics. In Design of Nanostructures for Theranostics Applications; Grumezescu, A.M., Ed.; William Andrew Publishing: Norwich, NY, USA, 2018; pp. 563-587. [CrossRef] · DOI
- Chen, D.S.; Irving, B.A.; Hodi, F.S. Molecular pathways: Next generation immunotherapy-Inhibiting programmed death ligand 1 and programmed death-1. Clin. Cancer Res. 2012, 18, 6580-6587. [CrossRef] [PubMed] · DOI
- Buchbinde, A.; Desai, A. CTLA-4 y PD-1 Pathways. Am. J. Clin. Oncol. 2016, 39, 98-106. [CrossRef] · DOI · Paper page
- Hu, Y.; Liu, C.; Muyldermans, S. Nanobody-Based Delivery Systems for Diagnosis and Targeted Tumor Therapy. Front. Immunol. 2017, 8, 1442. [CrossRef] [PubMed] · DOI
- Rylott, E.L.; Bruce, N.C. How synthetic biology can help bioremediation. Curr. Opin. Chem. Biol. 2020, 58, 86-95. [CrossRef] · DOI
- Fuentes, S.; Méndez, V.; Aguila, P.; Seeger, M. Bioremediation of petroleum hydrocarbons: Catabolic genes, microbial communities, and applications. Appl. Microbiol. Biotechnol. 2014, 98, 4781-4794. [CrossRef] · DOI
- Schwab, S.; de Souza Pires, A.; Candido, G.Z.; Saggin Júnior, O.J.; Reis, V.M.; Cruz, L.M. Analysis of the endophytic microbiota of roots and culms of two commercial sugarcane cultivars inoculated with a synthetic microbial community. Appl. Soil. Ecol. A Sect. Agric. Ecosyst. Environ. 2024, 195, 105235. [CrossRef] · DOI
- Chen, J.; Cai, Y.; Wang, Z.; Xu, Z.; Li, J.; Ma, X.; Zhuang, W.; Liu, D.; Wang, S.; Song, A.; et al. Construction of a synthetic microbial community based on multiomics linkage technology and analysis of the mechanism of lignocellulose degradation. Bioresour. Technol. 2023, 389, 129799. [CrossRef] [PubMed] · DOI
- Revelo-Romo, D.M.; Hurtado Gutiérrez, N.H.; Ruiz Pazos, J.O.; Pabón Figueroa, L.V.; Ordóñez Ordóñez, L.A. Bacterial diversity in the Cr(VI) reducing biocathode of a Microbial Fuel Cell with salt bridge. Rev. Argent. Microbiol. 2019, 51, 110-118. [CrossRef] [PubMed] · DOI
- Verma, N.; Sharma, R. Bioremediation of Toxic Heavy Metals: A Patent Review. Recent. Pat. Biotechnol. 2017, 11, 171-187. [CrossRef] · DOI
- Tripathi, S.; Arora, N.; Gupta, P.; Pruthi, P.A.; Poluri, K.M.; Pruthi, V. Microalgae. In Advanced Biofuels; Woodhead Publishing: Sawston, UK, 2019; pp. 97-128. [CrossRef] · DOI
- Chakravorty, M.; Nanda, M.; Bisht, B.; Sharma, R.K.; Kumar, S.; Mishra, A.; Vlaskin, M.S.; Chauhan, P.K.; Kumar, V. Heavy metal tolerance in microalgae: Detoxification mechanisms and applications. Aquat. Toxicol. 2023, 260, 106555. [CrossRef] [PubMed] · DOI
- Vacca-Jimeno, V.A.; Angulo-Mercado, E.R.; Puentes Ballesteros, D.M.; Torres-Yépez, J.G.; Plaza-Vega, M.E. Using the microalgae Chlorella sp. live suspended in decoloration wastewater from a textile factory. Prospects 2017, 15, 93-99. [CrossRef] · DOI
- Marrero-Coto, J.; Díaz-Valdivia, A.; Coto-Pérez, O. Mecanismos moleculares de resistencia a metales pesados en las bacterias y sus aplicaciones en la biorremediación. RCCB 2009, 41, 67-78. Available online: https://www.redalyc.org/articulo.oa?id=181221 644010 (accessed on 12 February 2024).
- Quiroga, M.V.; Stegen, J.C.; Mataloni, G.; Cowan, D.; Lebre, P.H.; Valverde, A. Microdiverse bacterial clades prevail across Antarctic wetlands. Mol. Ecol. 2024, 33, e17189. [CrossRef] · DOI
- Abele, D.; Vazquez, S.; Buma, A.; Hernandez, E.; Quiroga, C.; Held, C.; Frickenhaus, S.; Harms, L.; Lopez, J.L.; Helmke, E.; et al. Pelagic and benthic communities of the Antarctic ecosystem of Potter Cove: Genomics and ecological implications. Mar. Genom. 2017, 33, 1-11. [CrossRef] · DOI
- Roell, M.S.; Zurbriggen, M.D. The impact of synthetic biology for future agriculture and nutrition. Curr. Opin. Biotechnol. 2020, 61, 102-109. [CrossRef] [PubMed] · DOI
- Valenzuela-Ruiz, V.; Ayala-Zepeda, M.; Arellano-Wattenbarger, G.L.; Parra-Cota, F.I.; García-Pereyra, G.; Aviña-Martínez, G.N.; de los Santos-Villalobos, S. Las colecciones microbianas y su potencial contribución a la seguridad alimentaria actual y futura. Rev. Latinoam. Rec. Nat. 2018, 14, 18-25. ISSN 2594-0384.
- Mardanov, A.V.; Kotlyarov, R.V.; Beletsky, A.V.; Pimenov, N.V.; Nikolaev, Y.A.; Grachev, V.A.; Berestovskaya, Y.Y.; Ravin, N.V. Metagenomic data of the microbial community of lab-scale nitritation-anammox sequencing-batch bioreactor performing nitrogen removal from synthetic wastewater. Data Brief 2019, 27, 104722. [CrossRef] [PubMed] · DOI
- Schnell, S.; Bak, F.; Pfennig, N. Anaerobic degradation of aniline and dihydroxybenzenes by newly isolated sulfate-reducing bacteria and description of Desulfobacterium anilini. Arch. Microbiol. 1989, 152, 556-563. [CrossRef] [PubMed] · DOI
- Xie, X.; Müller, N. Enhanced aniline degradation by Desulfatiglans anilini in a synthetic microbial community with the phototrophic purple sulfur bacterium Thiocapsa roseopersicina. Syst. Appl. Microbiol. 2019, 42, 125998. [CrossRef] [PubMed] · DOI
- Cui, J.; Huang, L.; Wang, W.; Xu, P.; Zanaroli, G.; Tang, H. Maximization of the petroleum biodegradation using a synthetic bacterial consortium based on minimal value algorithm. Int. Biodeterior. Biodegrad. 2020, 150, 104964. [CrossRef] · DOI
- Silva, R.M.P.; Pozo, M.I.C.; de Oca, J.M.M.; Rodríguez, A.A.; Viñas, M.; Moreno, D.C. Aislamiento y selección de una cepa bacteriana degradadora de hidrocarburos a partir de suelos contaminados con petróleo. Rev. CENIC Cienc. Biol. 2008, 39, 44-51. Available online: https://www.redalyc.org/articulo.oa?id=181214889004 (accessed on 18 November 2023).
- Chen, W.; Li, J.; Sun, X.; Min, J.; Hu, X. High efficiency degradation of alkanes and crude oil by a salt-tolerant bacterium Dietzia species CN-3. Int. Biodeterior. Biodegrad. 2017, 118, 110-118. [CrossRef] 100. Reyes-Reyes, M.A.; Puentes-Cala, E.A.; Casanova-Montes, E.L.; López-Deluque, F.; Panqueva-Álvarez, J.H.; Castillo-Villamizar, G.A. Immobilization of potentially crude oil degrading bacteria in synthetic and natural organic matrices. Rev. Int. Contam. Ambient. 2018, 34, 597-609. [CrossRef] 101. Du, R.; Jiang, J.; Qu, G.; Wu, Q.; Xu, Y. Directionally controlling flavor compound profile based on the structure of synthetic microbial community in Chinese liquor fermentation. Food Microbiol. 2023, 114, 104305. [CrossRef] 102. Jiang, X.; Peng, Z.; Zhang, J. Starting with screening strains to construct synthetic microbial communities (SynComs) for traditional food fermentation. Int. Food Res. 2024, 190, 114557. [CrossRef] 103. Xin, W.; Zhang, J.; Yu, Y.; Tian, Y.; Li, H.; Chen, X.; Li, W.; Liu, Y.; Lu, T.; He, B.; et al. Root microbiota of tea plants regulate nitrogen homeostasis and theanine synthesis to influence tea quality. Curr. Biol. 2024, 34, 868-880.e6. [CrossRef] [PubMed] 104. · DOI
- Yuan, J.; Zhao, K.; Tan, X.; Xue, R.; Zeng, Y.; Ratti, C.; Trivedi, P. Perspective on the development of synthetic microbial community (SynCom) biosensors. Trends Biotechnol. 2023, 41, 1227-1236. [CrossRef] [PubMed] 105. Yu, W.; Xu, X.; Jin, K.; Liu, Y.; Li, J.; Du, G.; Lv, X.; Liu, L. Genetically encoded biosensors for microbial synthetic biology: From conceptual frameworks to practical applications. Biotechnol. Adv. 2023, 62, 108077. [CrossRef] [PubMed] 106. Li, X.; Zheng, X.; Yadav, N.; Saha, S.; Salama, E.-S.; Li, X.; Wang, L.; Jeon, B.-H. Rational management of the plant microbiome for the Second Green Revolution. Plant Commun. 2024, 5, 100812. [CrossRef] 107. Hao, X.; Wang, X.; Chen, C.; Liu, R.; Yin, Y.; Yao, J.; Xiao, Z.; Liu, X.; Shen, X.; Liu, X. Synthetic bacterial communities reshape microbial communities and enhance nutrient supply in desertified land of Northwest China. Appl. Soil. Ecol. A Sect. Agric. Ecosyst. Environ. 2023, 189, 104972. [CrossRef] 108. · DOI
- Hays, S.G.; Yan, L.L.; Silver, P.A.; Ducat, D.C. Synthetic photosynthetic consortia define interactions leading to robustness and photoproduction. J. Biol. Eng. 2017, 11, 4. [CrossRef] 109. Ding, M.-Z.; Song, H.; Wang, E.-X.; Liu, Y.; Yuan, Y.-J. Design and construction of synthetic microbial consortia in China. Synth. Syst. Biotechnol. 2016, 1, 230-235. [CrossRef] 110. · DOI
- Trump, B.D.; Foran, C.; Rycroft, T.; Wood, M.D.; Bandolin, N.; Cains, M.; Hamilton, K. Development of community of practice to support quantitative risk assessment for synthetic biology products: Contaminant bioremediation and invasive carp control as cases. Environ. Syst. Decis. 2018, 38, 517-527. [CrossRef] 111. Sivasubramaniam, D.; Franks, A.E. Bioengineering microbial communities: Their potential to help, hinder and disgust. Bioengineered 2016, 7, 137-144. [CrossRef · DOI
Cited by
Sorted by citations
Qattan, S. Y. A. (2025) · Environmental Sciences Europe · doi:10.1186/s12302-025-01103-y · Cited by 109 · see citing works
- Authors
- Contreras-Salgado, E. A., Sánchez-Morán, A. G., Rodríguez-Preciado, S. Y., Sifuentes-Franco, S., Rodríguez-Rodríguez, R., Macías-Barragán, J., & Díaz-Zaragoza, M.
- Affiliations
- Universidad de Guadalajara (MX)
- Laboratorio de Sistemas Biológicos, Departamento de Ciencias de la Salud, Centro Universitario de los Valles, Universidad de Guadalajara, Carretera Guadalajara-Ameca Km. 45.5, Ameca, Jalisco 466000, Mexico
- Laboratorio de Ciencia Básica, Departamento de Ciencias Naturales y Exactas, Centro Universitario de los Valles, Universidad de Guadalajara, Carretera Guadalajara-Ameca Km. 45.5, Ameca, Jalisco 466000, Mexico
- Corresponding author
- Díaz-Zaragoza, Mariana
- Venue
- Microbiology Research
- Publisher
- MDPI AG
- Published
- 2024-08-29
- Volume
- 15
- Issue
- 3
- Pages
- 1709-1727
- ISSN
- 2036-7473 (ISSN-L)
- 2036-7481
- OpenAlex
- W4401994297
- Cited by
- 42
- References
- 0
- Citations by year
- 2026: 24 · 2025: 17 · 2024: 1
- FWCI
- 5.43
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Microbiology Research (publishedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Fomento a la Investigación 2023–2024 Centro Universitario de los Valles (CUVALLES)-Universidad de Guadalajara (274321)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gene Regulatory Network Analysis
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Keywords
- synthetic microbial communities, synthetic biology, synthetic gene circuits, co-culture, biomedicine, bioremediation, bioengineering, horizontal gene transfer, biocontainment
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review